Wall clock time and date at job start Tue Mar 31 2020 11:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00141 * 2 1 4 4 H 1.48494 * 109.46883 * 270.00139 * 3 2 1 5 5 H 1.48506 * 109.46975 * 29.99644 * 3 2 1 6 6 H 1.48494 * 109.47208 * 149.99513 * 3 2 1 7 7 C 1.37881 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99775 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99735 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46904 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00123 * 269.99929 * 10 9 7 12 12 C 1.52998 * 109.47055 * 270.00331 * 11 10 9 13 13 C 1.53006 * 117.49624 * 243.62225 * 12 11 10 14 14 C 1.53000 * 117.49766 * 174.99858 * 12 11 10 15 15 C 1.34779 * 120.00169 * 89.99597 * 10 9 7 16 16 O 1.21282 * 119.99922 * 0.02562 * 15 10 9 17 17 C 1.50699 * 120.00037 * 180.02562 * 15 10 9 18 18 O 1.42905 * 109.46972 * 180.02562 * 17 15 10 19 19 C 1.35905 * 116.99842 * 180.02562 * 18 17 15 20 20 C 1.38897 * 119.97478 * 359.72120 * 19 18 17 21 21 C 1.38284 * 120.29655 * 179.76368 * 20 19 18 22 22 C 1.37935 * 120.23741 * 0.51624 * 21 20 19 23 23 C 1.39843 * 119.93425 * 359.73936 * 22 21 20 24 24 C 1.47180 * 120.14417 * 180.02562 * 23 22 21 25 25 O 1.21245 * 119.99889 * 179.97438 * 24 23 22 26 26 C 1.38383 * 119.97135 * 179.97438 * 19 18 17 27 27 H 0.97004 * 120.00211 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.47183 * 60.00118 * 9 7 2 29 29 H 1.09007 * 109.46954 * 300.00035 * 9 7 2 30 30 H 1.09002 * 109.46740 * 30.00103 * 11 10 9 31 31 H 1.09001 * 109.47266 * 149.99827 * 11 10 9 32 32 H 1.08997 * 115.54991 * 29.32455 * 12 11 10 33 33 H 1.09006 * 117.49685 * 359.97438 * 13 12 11 34 34 H 1.08997 * 117.49854 * 145.02300 * 13 12 11 35 35 H 1.08999 * 117.49770 * 214.97433 * 14 12 11 36 36 H 1.08998 * 117.50268 * 359.97438 * 14 12 11 37 37 H 1.09000 * 109.47247 * 60.00371 * 17 15 10 38 38 H 1.09001 * 109.47358 * 299.99798 * 17 15 10 39 39 H 1.08005 * 119.84827 * 0.02562 * 20 19 18 40 40 H 1.08007 * 119.88060 * 180.25370 * 21 20 19 41 41 H 1.07998 * 120.03199 * 179.76389 * 22 21 20 42 42 H 1.08003 * 120.00018 * 359.97438 * 24 23 22 43 43 H 1.08001 * 120.12039 * 359.95610 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.2436 -3.2661 1.2696 12 6 5.6884 -3.0257 1.7119 13 6 6.6118 -4.2425 1.8003 14 6 6.1085 -3.5695 3.0789 15 6 4.2249 -3.2104 -1.1663 16 8 4.0235 -2.6383 -2.2166 17 6 4.7267 -4.6314 -1.1663 18 8 4.8866 -5.0800 -2.5137 19 6 5.3349 -6.3505 -2.6919 20 6 5.6204 -7.1466 -1.5900 21 6 6.0723 -8.4419 -1.7636 22 6 6.2532 -8.9503 -3.0330 23 6 5.9738 -8.1556 -4.1493 24 6 6.1646 -8.6936 -5.5059 25 8 5.9211 -8.0025 -6.4719 26 6 5.5115 -6.8483 -3.9709 27 1 -0.4851 0.8401 0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8752 -0.6803 -0.8889 30 1 3.5624 -2.8822 2.0291 31 1 4.0766 -4.3353 1.1390 32 1 6.1281 -2.0822 1.3888 33 1 6.1899 -5.2143 1.5437 34 1 7.6594 -4.0995 1.5353 35 1 6.8249 -2.9839 3.6550 36 1 5.3555 -4.0982 3.6634 37 1 4.0082 -5.2705 -0.6531 38 1 5.6866 -4.6778 -0.6520 39 1 5.4849 -6.7534 -0.5932 40 1 6.2884 -9.0564 -0.9020 41 1 6.6098 -9.9611 -3.1647 42 1 6.5215 -9.7040 -5.6409 43 1 5.2930 -6.2292 -4.8284 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264917780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:31 Heat of formation + Delta-G solvation = -43.476149 kcal Electronic energy + Delta-G solvation = -25845.051263 eV Core-core repulsion = 22050.413181 eV Total energy + Delta-G solvation = -3794.638082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59457 -39.58374 -38.83127 -37.47323 -36.99336 -34.62854 -32.56906 -31.56818 -30.82748 -29.28846 -27.67862 -26.20458 -25.11164 -22.78764 -22.46928 -22.41741 -21.10908 -20.83650 -18.72037 -18.49658 -17.01392 -16.89302 -16.59623 -16.43349 -16.23946 -15.52475 -15.31064 -15.13660 -14.75752 -14.63665 -14.44928 -14.08248 -13.99061 -13.59246 -13.30239 -12.83187 -12.59701 -12.52969 -12.27923 -12.17960 -11.75067 -11.61620 -11.58846 -11.30736 -11.19706 -10.97399 -10.61769 -10.44755 -10.18210 -10.12047 -10.03345 -9.58346 -9.33024 -9.13358 -8.62404 -8.46773 -7.88907 -6.12221 -4.11845 0.33983 1.15384 2.17896 2.71943 3.10908 3.27155 3.32774 3.35436 3.53410 3.63386 3.82416 4.04573 4.36464 4.44430 4.61708 4.66497 4.69998 4.76818 4.83010 4.89529 4.98764 5.07144 5.10812 5.17093 5.21454 5.26961 5.33533 5.50398 5.63759 5.65118 5.79100 5.88673 5.94388 5.99821 6.03099 6.05619 6.23517 6.35056 6.59746 6.85700 7.11794 7.14361 7.26413 7.55155 8.04972 8.40943 8.77913 8.90817 9.47204 11.01025 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013995 B = 0.003273 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.192651 B = 8553.334070 C =10026.304003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.218 3.782 10 N -0.585 5.585 11 C 0.139 3.861 12 C -0.171 4.171 13 C -0.188 4.188 14 C -0.172 4.172 15 C 0.512 3.488 16 O -0.513 6.513 17 C 0.040 3.960 18 O -0.284 6.284 19 C 0.125 3.875 20 C -0.180 4.180 21 C -0.093 4.093 22 C -0.113 4.113 23 C -0.156 4.156 24 C 0.383 3.617 25 O -0.454 6.454 26 C -0.092 4.092 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.038 0.962 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.109 0.891 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.327 -19.175 3.175 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.571 4.571 8 H 0.093 0.907 9 C 0.098 3.902 10 N -0.318 5.318 11 C 0.014 3.986 12 C -0.190 4.190 13 C -0.225 4.225 14 C -0.209 4.209 15 C 0.297 3.703 16 O -0.388 6.388 17 C -0.038 4.038 18 O -0.196 6.196 19 C 0.079 3.921 20 C -0.199 4.199 21 C -0.111 4.111 22 C -0.132 4.132 23 C -0.157 4.157 24 C 0.241 3.759 25 O -0.326 6.326 26 C -0.111 4.111 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.125 0.875 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 15.844 -18.180 1.921 24.192 hybrid contribution 0.339 0.751 0.628 1.036 sum 16.183 -17.429 2.549 23.920 Atomic orbital electron populations 1.69889 1.06208 1.27077 1.50186 1.24844 0.94763 0.98952 0.94327 0.86860 0.80151 0.83787 0.78958 1.19831 1.21014 1.19030 1.21300 0.89057 0.94921 1.51789 0.90689 1.19716 0.95778 0.77031 0.97643 1.47776 1.64356 1.15983 1.03702 1.21118 0.93476 0.96579 0.87393 1.22975 0.96705 0.98640 1.00708 1.23081 0.99797 0.96803 1.02826 1.22904 1.03552 1.03886 0.90574 1.19666 0.79239 0.86675 0.84721 1.90736 1.50413 1.66947 1.30685 1.22743 1.02251 0.96050 0.82779 1.86235 1.80112 1.25566 1.27697 1.19027 0.94658 0.84480 0.93973 1.21567 1.04164 0.95759 0.98415 1.20898 0.98115 0.94666 0.97416 1.21233 1.00515 0.99728 0.91687 1.20735 1.03801 0.94676 0.96478 1.24087 0.73125 0.92291 0.86446 1.90557 1.37452 1.61738 1.42873 1.20727 0.99524 0.95137 0.95703 0.92477 0.94801 0.94410 0.88648 0.91362 0.87217 0.89020 0.88937 0.88815 0.88504 0.89436 0.89167 0.84963 0.85075 0.84947 0.87489 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.53 -15.03 9.94 -34.44 -0.34 -15.38 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.22 5.19 4.23 -5.19 -0.02 5.16 16 10 N -0.59 -11.48 2.46 -175.06 -0.43 -11.91 16 11 C 0.14 1.99 5.49 -4.04 -0.02 1.96 16 12 C -0.17 -2.03 5.95 -90.62 -0.54 -2.57 16 13 C -0.19 -1.70 9.18 -26.72 -0.25 -1.94 16 14 C -0.17 -1.59 10.25 -26.73 -0.27 -1.87 16 15 C 0.51 10.42 7.75 -10.99 -0.09 10.34 16 16 O -0.51 -13.10 16.08 -14.35 -0.23 -13.33 16 17 C 0.04 0.60 3.77 36.01 0.14 0.73 16 18 O -0.28 -4.74 9.67 -39.35 -0.38 -5.12 16 19 C 0.12 1.66 6.68 -39.28 -0.26 1.40 16 20 C -0.18 -1.79 9.04 -39.32 -0.36 -2.15 16 21 C -0.09 -0.71 10.02 -39.68 -0.40 -1.11 16 22 C -0.11 -0.82 9.79 -39.09 -0.38 -1.20 16 23 C -0.16 -1.52 5.87 -105.08 -0.62 -2.14 16 24 C 0.38 3.32 11.46 34.36 0.39 3.71 16 25 O -0.45 -6.00 17.16 5.59 0.10 -5.91 16 26 C -0.09 -1.19 9.54 -38.94 -0.37 -1.56 16 27 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 29 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 30 H 0.10 1.44 8.07 -51.93 -0.42 1.02 16 31 H 0.07 0.79 6.17 -51.93 -0.32 0.47 16 32 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.09 0.70 7.87 -51.93 -0.41 0.29 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.09 6.93 -51.93 -0.36 0.73 16 38 H 0.09 1.06 6.35 -51.93 -0.33 0.73 16 39 H 0.13 1.07 6.28 -52.48 -0.33 0.74 16 40 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 41 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 42 H 0.11 0.42 8.06 -52.48 -0.42 0.00 16 43 H 0.14 2.04 7.65 -52.49 -0.40 1.64 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -36.82 368.36 -8.62 -45.44 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.84 Total: -0.18 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.48 Total: -4.57 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.34 Total: -38.57 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.52 Total: -24.36 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.82 -8.62 -45.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264917780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.965 kcal (2) G-P(sol) polarization free energy of solvation -36.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds