Wall clock time and date at job start Tue Mar 31 2020 11:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00141 * 2 1 4 4 H 1.48494 * 109.46883 * 270.00139 * 3 2 1 5 5 H 1.48506 * 109.46975 * 29.99644 * 3 2 1 6 6 H 1.48494 * 109.47208 * 149.99513 * 3 2 1 7 7 C 1.37881 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99775 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99735 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.46904 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00123 * 269.99929 * 10 9 7 12 12 C 1.52998 * 109.47055 * 270.00331 * 11 10 9 13 13 C 1.53006 * 117.49624 * 243.62225 * 12 11 10 14 14 C 1.53000 * 117.49766 * 174.99858 * 12 11 10 15 15 C 1.34779 * 120.00169 * 89.99597 * 10 9 7 16 16 O 1.21282 * 119.99922 * 0.02562 * 15 10 9 17 17 C 1.50699 * 120.00037 * 180.02562 * 15 10 9 18 18 O 1.42905 * 109.46972 * 180.02562 * 17 15 10 19 19 C 1.35905 * 116.99842 * 180.02562 * 18 17 15 20 20 C 1.38897 * 119.97478 * 359.72120 * 19 18 17 21 21 C 1.38284 * 120.29655 * 179.76368 * 20 19 18 22 22 C 1.37935 * 120.23741 * 0.51624 * 21 20 19 23 23 C 1.39843 * 119.93425 * 359.73936 * 22 21 20 24 24 C 1.47180 * 120.14417 * 180.02562 * 23 22 21 25 25 O 1.21245 * 119.99889 * 179.97438 * 24 23 22 26 26 C 1.38383 * 119.97135 * 179.97438 * 19 18 17 27 27 H 0.97004 * 120.00211 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.47183 * 60.00118 * 9 7 2 29 29 H 1.09007 * 109.46954 * 300.00035 * 9 7 2 30 30 H 1.09002 * 109.46740 * 30.00103 * 11 10 9 31 31 H 1.09001 * 109.47266 * 149.99827 * 11 10 9 32 32 H 1.08997 * 115.54991 * 29.32455 * 12 11 10 33 33 H 1.09006 * 117.49685 * 359.97438 * 13 12 11 34 34 H 1.08997 * 117.49854 * 145.02300 * 13 12 11 35 35 H 1.08999 * 117.49770 * 214.97433 * 14 12 11 36 36 H 1.08998 * 117.50268 * 359.97438 * 14 12 11 37 37 H 1.09000 * 109.47247 * 60.00371 * 17 15 10 38 38 H 1.09001 * 109.47358 * 299.99798 * 17 15 10 39 39 H 1.08005 * 119.84827 * 0.02562 * 20 19 18 40 40 H 1.08007 * 119.88060 * 180.25370 * 21 20 19 41 41 H 1.07998 * 120.03199 * 179.76389 * 22 21 20 42 42 H 1.08003 * 120.00018 * 359.97438 * 24 23 22 43 43 H 1.08001 * 120.12039 * 359.95610 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.2436 -3.2661 1.2696 12 6 5.6884 -3.0257 1.7119 13 6 6.6118 -4.2425 1.8003 14 6 6.1085 -3.5695 3.0789 15 6 4.2249 -3.2104 -1.1663 16 8 4.0235 -2.6383 -2.2166 17 6 4.7267 -4.6314 -1.1663 18 8 4.8866 -5.0800 -2.5137 19 6 5.3349 -6.3505 -2.6919 20 6 5.6204 -7.1466 -1.5900 21 6 6.0723 -8.4419 -1.7636 22 6 6.2532 -8.9503 -3.0330 23 6 5.9738 -8.1556 -4.1493 24 6 6.1646 -8.6936 -5.5059 25 8 5.9211 -8.0025 -6.4719 26 6 5.5115 -6.8483 -3.9709 27 1 -0.4851 0.8401 0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8752 -0.6803 -0.8889 30 1 3.5624 -2.8822 2.0291 31 1 4.0766 -4.3353 1.1390 32 1 6.1281 -2.0822 1.3888 33 1 6.1899 -5.2143 1.5437 34 1 7.6594 -4.0995 1.5353 35 1 6.8249 -2.9839 3.6550 36 1 5.3555 -4.0982 3.6634 37 1 4.0082 -5.2705 -0.6531 38 1 5.6866 -4.6778 -0.6520 39 1 5.4849 -6.7534 -0.5932 40 1 6.2884 -9.0564 -0.9020 41 1 6.6098 -9.9611 -3.1647 42 1 6.5215 -9.7040 -5.6409 43 1 5.2930 -6.2292 -4.8284 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264917780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:31 Heat of formation + Delta-G solvation = -67.848981 kcal Electronic energy + Delta-G solvation = -25846.108149 eV Core-core repulsion = 22050.413181 eV Total energy + Delta-G solvation = -3795.694967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.61807 -40.75625 -39.85183 -38.46887 -37.97132 -36.22144 -34.66033 -32.32271 -31.85213 -30.81961 -28.98634 -27.60472 -25.92930 -24.40112 -23.39293 -23.15139 -22.08095 -21.75637 -20.13660 -19.44725 -19.13608 -18.12964 -17.59171 -17.46225 -17.29013 -16.83379 -16.31394 -16.16176 -15.98035 -15.80677 -15.48757 -15.29492 -14.80804 -14.76545 -14.66177 -14.40354 -13.96700 -13.85709 -13.56772 -13.37668 -13.02043 -12.79216 -12.62328 -12.48791 -12.27018 -12.18878 -12.13669 -12.02797 -11.79240 -11.26412 -10.99566 -10.86418 -10.84207 -10.65879 -10.06297 -9.56077 -9.29852 -8.37328 -6.42758 -0.37850 0.41325 1.29137 1.34489 1.41720 1.50045 1.52302 1.59148 2.27818 2.51334 2.81917 2.94946 2.97261 3.33350 3.41052 3.76533 3.83307 3.89112 3.97342 4.04223 4.06786 4.13405 4.16654 4.27381 4.31352 4.44219 4.66421 4.70494 4.71143 4.80267 4.86668 4.89929 4.91295 5.10072 5.24164 5.29737 5.31007 5.35597 5.38718 5.40999 5.50351 5.71041 6.17382 6.29140 6.49039 6.53175 6.58660 7.13956 7.26667 8.79537 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013995 B = 0.003273 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.192651 B = 8553.334070 C =10026.304003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.280 1.280 5 H -0.272 1.272 6 H -0.236 1.236 7 C -0.538 4.538 8 H 0.031 0.969 9 C 0.227 3.773 10 N -0.588 5.588 11 C 0.135 3.865 12 C -0.197 4.197 13 C -0.170 4.170 14 C -0.158 4.158 15 C 0.499 3.501 16 O -0.583 6.583 17 C 0.057 3.943 18 O -0.329 6.329 19 C 0.090 3.910 20 C -0.176 4.176 21 C -0.086 4.086 22 C -0.088 4.088 23 C -0.168 4.168 24 C 0.391 3.609 25 O -0.512 6.512 26 C -0.130 4.130 27 H 0.269 0.731 28 H 0.055 0.945 29 H 0.015 0.985 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.127 0.873 39 H 0.155 0.845 40 H 0.175 0.825 41 H 0.183 0.817 42 H 0.173 0.827 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.581 -22.730 5.968 30.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.768 3.232 4 H -0.205 1.205 5 H -0.197 1.197 6 H -0.159 1.159 7 C -0.577 4.577 8 H 0.049 0.951 9 C 0.105 3.895 10 N -0.319 5.319 11 C 0.013 3.987 12 C -0.217 4.217 13 C -0.207 4.207 14 C -0.195 4.195 15 C 0.286 3.714 16 O -0.463 6.463 17 C -0.021 4.021 18 O -0.243 6.243 19 C 0.045 3.955 20 C -0.194 4.194 21 C -0.104 4.104 22 C -0.106 4.106 23 C -0.170 4.170 24 C 0.252 3.748 25 O -0.388 6.388 26 C -0.149 4.149 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.134 0.866 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.144 0.856 39 H 0.173 0.827 40 H 0.192 0.808 41 H 0.200 0.800 42 H 0.188 0.812 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 19.134 -21.796 4.786 29.396 hybrid contribution -0.688 1.664 -0.216 1.814 sum 18.446 -20.132 4.570 27.685 Atomic orbital electron populations 1.70039 1.08168 1.28382 1.51735 1.25825 0.95668 1.03263 0.93799 0.85754 0.80030 0.78536 0.78886 1.20547 1.19730 1.15916 1.21539 0.91448 0.93369 1.51323 0.95058 1.19347 0.92791 0.80063 0.97275 1.47830 1.63394 1.14817 1.05845 1.21408 0.95210 0.97690 0.84420 1.22688 0.95431 0.99650 1.03894 1.23254 0.99596 0.96236 1.01566 1.23013 1.03492 1.03142 0.89892 1.20757 0.78063 0.88830 0.83719 1.90689 1.53491 1.68995 1.33086 1.22634 1.04301 0.92067 0.83084 1.86165 1.81536 1.28039 1.28552 1.19272 0.97116 0.83860 0.95259 1.21887 1.03127 0.96413 0.98015 1.21473 0.96035 0.93787 0.99075 1.21820 0.97307 1.01095 0.90380 1.21085 1.03766 0.93568 0.98532 1.25002 0.70929 0.93826 0.85011 1.90557 1.40210 1.63590 1.44423 1.20748 1.02380 0.96937 0.94875 0.92192 0.92678 0.96652 0.89976 0.88153 0.89229 0.86640 0.88094 0.88070 0.87300 0.86753 0.85570 0.82711 0.80755 0.79952 0.81154 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.20 13.96 21.45 0.30 -59.90 16 2 C 0.01 0.76 5.47 84.66 0.46 1.23 16 3 Si 0.95 45.02 27.47 68.60 1.88 46.90 16 4 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 7 C -0.54 -31.94 9.94 25.60 0.25 -31.69 16 8 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 9 C 0.23 11.16 4.23 85.63 0.36 11.52 16 10 N -0.59 -23.63 2.46 -826.15 -2.03 -25.66 16 11 C 0.13 3.71 5.49 86.38 0.47 4.18 16 12 C -0.20 -4.25 5.95 -10.79 -0.06 -4.31 16 13 C -0.17 -2.33 9.18 30.60 0.28 -2.04 16 14 C -0.16 -2.35 10.25 30.60 0.31 -2.04 16 15 C 0.50 21.16 7.75 87.66 0.68 21.84 16 16 O -0.58 -32.06 16.08 16.00 0.26 -31.80 16 17 C 0.06 1.65 3.77 71.24 0.27 1.92 16 18 O -0.33 -11.56 9.67 -73.45 -0.71 -12.26 16 19 C 0.09 2.40 6.68 22.46 0.15 2.55 16 20 C -0.18 -2.89 9.04 22.44 0.20 -2.69 16 21 C -0.09 -0.83 10.02 22.21 0.22 -0.61 16 22 C -0.09 -0.82 9.79 22.59 0.22 -0.60 16 23 C -0.17 -3.01 5.87 -20.16 -0.12 -3.13 16 24 C 0.39 6.12 11.46 70.17 0.80 6.92 16 25 O -0.51 -14.09 17.16 -2.92 -0.05 -14.14 16 26 C -0.13 -3.59 9.54 22.68 0.22 -3.37 16 27 H 0.27 15.95 8.31 -92.71 -0.77 15.17 16 28 H 0.06 2.46 7.13 -2.39 -0.02 2.44 16 29 H 0.02 0.83 6.85 -2.38 -0.02 0.81 16 30 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 31 H 0.10 2.06 6.17 -2.39 -0.01 2.04 16 32 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.12 1.05 7.87 -2.38 -0.02 1.03 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.11 2.63 6.93 -2.39 -0.02 2.61 16 38 H 0.13 2.65 6.35 -2.39 -0.02 2.63 16 39 H 0.16 1.72 6.28 -2.91 -0.02 1.70 16 40 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 41 H 0.18 -0.08 8.06 -2.91 -0.02 -0.10 16 42 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 43 H 0.10 3.51 7.65 -2.91 -0.02 3.48 16 Total: -1.00 -93.13 368.36 5.35 -87.78 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.96 Total: 9.42 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 4.73 Total: -0.33 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -1.73 Total: -85.56 kcal Atomic # 8 Polarization: -57.71 SS G_CDS: -0.50 Total: -58.21 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.90 kcal Total: -93.13 5.35 -87.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264917780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.930 kcal (2) G-P(sol) polarization free energy of solvation -93.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds