Wall clock time and date at job start Tue Mar 31 2020 11:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86802 * 119.99697 * 2 1 4 4 H 1.48504 * 109.47045 * 269.99735 * 3 2 1 5 5 H 1.48494 * 109.47414 * 29.99672 * 3 2 1 6 6 H 1.48498 * 109.46847 * 150.00071 * 3 2 1 7 7 C 1.38947 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99956 * 199.10009 * 7 2 1 9 9 N 1.37099 * 119.99870 * 19.09905 * 7 2 1 10 10 C 1.34770 * 120.00170 * 42.78960 * 9 7 2 11 11 O 1.21300 * 120.00038 * 0.27243 * 10 9 7 12 12 C 1.50703 * 120.00336 * 180.27337 * 10 9 7 13 13 O 1.42897 * 109.47043 * 179.97438 * 12 10 9 14 14 C 1.35918 * 116.99652 * 180.02562 * 13 12 10 15 15 C 1.38888 * 119.97227 * 359.71869 * 14 13 12 16 16 C 1.38293 * 120.29665 * 179.76511 * 15 14 13 17 17 C 1.37936 * 120.23093 * 0.51475 * 16 15 14 18 18 C 1.39836 * 119.93578 * 359.74814 * 17 16 15 19 19 C 1.47185 * 120.14357 * 180.02562 * 18 17 16 20 20 O 1.21255 * 120.00188 * 359.97438 * 19 18 17 21 21 C 1.38390 * 119.96696 * 180.02562 * 14 13 12 22 22 C 1.46506 * 119.99922 * 223.06199 * 9 7 2 23 23 C 1.54271 * 110.03175 * 59.61208 * 22 9 7 24 24 C 1.54965 * 104.15832 * 217.13584 * 23 22 9 25 25 C 1.54889 * 102.77661 * 37.89061 * 24 23 22 26 26 C 1.53878 * 110.03000 * 302.39586 * 22 9 7 27 27 H 0.96997 * 120.00006 * 354.78176 * 1 2 3 28 28 H 1.08993 * 109.46984 * 299.99925 * 12 10 9 29 29 H 1.09005 * 109.46838 * 60.00073 * 12 10 9 30 30 H 1.07998 * 119.85239 * 0.02562 * 15 14 13 31 31 H 1.07998 * 119.88151 * 180.26344 * 16 15 14 32 32 H 1.07995 * 120.02935 * 179.76046 * 17 16 15 33 33 H 1.08004 * 120.00281 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.11928 * 359.95397 * 21 14 13 35 35 H 1.09003 * 110.01441 * 181.00517 * 22 9 7 36 36 H 1.09000 * 110.48284 * 335.78586 * 23 22 9 37 37 H 1.08997 * 110.47925 * 98.42569 * 23 22 9 38 38 H 1.08998 * 110.71732 * 279.57557 * 24 23 22 39 39 H 1.08995 * 110.91942 * 156.29685 * 24 23 22 40 40 H 1.09000 * 110.48390 * 203.40705 * 25 24 23 41 41 H 1.08995 * 110.60199 * 80.81768 * 25 24 23 42 42 H 1.08998 * 110.02945 * 238.56473 * 26 22 9 43 43 H 1.08996 * 110.03085 * 359.97438 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0090 -1.2033 0.0005 8 1 3.0444 -1.2289 0.3066 9 7 1.3801 -2.3581 -0.3874 10 6 0.5743 -2.3564 -1.4677 11 8 0.4093 -1.3342 -2.0997 12 6 -0.1219 -3.6243 -1.8906 13 8 -0.9132 -3.3684 -3.0526 14 6 -1.6116 -4.4152 -3.5663 15 6 -1.5307 -5.6648 -2.9656 16 6 -2.2422 -6.7334 -3.4798 17 6 -3.0299 -6.5687 -4.6001 18 6 -3.1141 -5.3161 -5.2159 19 6 -3.9536 -5.1350 -6.4112 20 8 -4.5737 -6.0733 -6.8644 21 6 -2.3976 -4.2363 -4.6912 22 6 1.5793 -3.5927 0.3758 23 6 1.1192 -3.3921 1.8346 24 6 2.1446 -4.1999 2.6699 25 6 3.4754 -3.9426 1.9204 26 6 3.0767 -3.9429 0.4302 27 1 -0.4850 0.8365 0.0764 28 1 0.6214 -4.3884 -2.1178 29 1 -0.7655 -3.9722 -1.0826 30 1 -0.9127 -5.8017 -2.0906 31 1 -2.1778 -7.7012 -3.0048 32 1 -3.5811 -7.4063 -5.0012 33 1 -4.0173 -4.1664 -6.8848 34 1 -2.4579 -3.2660 -5.1615 35 1 1.0213 -4.4090 -0.0828 36 1 1.1549 -2.3366 2.1041 37 1 0.1139 -3.7891 1.9754 38 1 1.8965 -5.2612 2.6634 39 1 2.1974 -3.8232 3.6913 40 1 4.1887 -4.7412 2.1246 41 1 3.8943 -2.9768 2.2030 42 1 3.2452 -4.9296 -0.0012 43 1 3.6550 -3.1946 -0.1117 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265663396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:34 Heat of formation + Delta-G solvation = -68.336247 kcal Electronic energy + Delta-G solvation = -26391.336864 eV Core-core repulsion = 22595.620767 eV Total energy + Delta-G solvation = -3795.716097 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.27370 -39.24307 -38.63604 -37.13166 -36.33438 -33.34496 -31.78469 -31.53333 -30.16890 -28.18497 -27.95556 -26.93391 -25.08485 -24.07843 -22.64516 -20.99562 -20.17866 -19.99916 -19.26384 -18.03778 -16.95713 -16.12139 -16.06470 -15.94081 -15.75272 -15.66328 -14.97432 -14.69904 -14.37432 -14.28707 -14.10813 -13.81777 -13.55113 -13.22197 -12.98488 -12.80507 -12.23799 -12.18992 -11.82082 -11.44243 -11.19781 -11.16613 -11.00462 -10.84674 -10.70139 -10.65010 -10.56360 -10.48853 -10.25298 -10.10681 -9.97129 -9.88937 -9.14095 -8.79039 -8.19037 -8.12217 -7.16550 -6.15688 -3.89779 0.51240 1.38396 2.33678 3.21107 3.30793 3.36562 3.40204 3.74002 4.05156 4.11724 4.31604 4.67768 4.83756 4.94399 5.06681 5.09766 5.14432 5.19877 5.25073 5.29564 5.35840 5.39298 5.46903 5.70620 5.76068 5.78293 5.84839 5.97713 6.08355 6.12177 6.14416 6.18652 6.27012 6.32194 6.35428 6.37716 6.52642 6.59122 6.72750 6.85572 7.11310 7.23002 7.53121 7.61854 8.22681 8.97770 9.10731 9.58759 10.19341 10.93403 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014833 B = 0.003551 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.283914 B = 7882.987325 C = 9395.299035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.343 4.343 8 H 0.082 0.918 9 N -0.442 5.442 10 C 0.474 3.526 11 O -0.512 6.512 12 C 0.046 3.954 13 O -0.280 6.280 14 C 0.128 3.872 15 C -0.180 4.180 16 C -0.094 4.094 17 C -0.109 4.109 18 C -0.158 4.158 19 C 0.388 3.612 20 O -0.464 6.464 21 C -0.103 4.103 22 C 0.128 3.872 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.131 4.131 27 H 0.265 0.735 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.142 0.858 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -12.112 -1.518 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.138 4.138 3 Si 0.738 3.262 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.470 4.470 8 H 0.100 0.900 9 N -0.166 5.166 10 C 0.259 3.741 11 O -0.388 6.388 12 C -0.033 4.033 13 O -0.192 6.192 14 C 0.081 3.919 15 C -0.199 4.199 16 C -0.112 4.112 17 C -0.127 4.127 18 C -0.159 4.159 19 C 0.247 3.753 20 O -0.337 6.337 21 C -0.122 4.122 22 C 0.023 3.977 23 C -0.164 4.164 24 C -0.161 4.161 25 C -0.155 4.155 26 C -0.170 4.170 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.124 0.876 34 H 0.160 0.840 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.724 -11.734 -2.242 12.069 hybrid contribution 0.461 0.580 0.488 0.887 sum -1.262 -11.154 -1.754 11.361 Atomic orbital electron populations 1.69824 1.06570 1.27555 1.42312 1.25235 0.94781 0.99416 0.94404 0.86239 0.79314 0.82286 0.78359 1.20328 1.21358 1.19889 1.18832 0.95101 0.83763 1.49277 0.90039 1.43246 1.43881 1.07771 1.21692 1.19304 0.84285 0.87915 0.82595 1.90575 1.61775 1.32862 1.53576 1.22818 0.93946 1.00244 0.86267 1.86266 1.57660 1.32095 1.43159 1.19105 0.92387 0.87118 0.93303 1.21608 1.03246 0.92779 1.02286 1.20911 0.95917 0.98531 0.95807 1.21240 0.99020 0.96725 0.95731 1.20667 1.01437 0.94302 0.99496 1.24093 0.76220 0.92862 0.82106 1.90503 1.37242 1.45165 1.60833 1.20657 0.96825 0.99512 0.95242 1.21753 0.94847 0.88267 0.92871 1.22670 0.96898 1.02512 0.94319 1.22451 0.95836 0.99173 0.98597 1.22256 0.96814 1.01053 0.95357 1.22459 0.97207 1.00624 0.96692 0.92514 0.91005 0.90890 0.84942 0.85327 0.85169 0.87564 0.84035 0.92084 0.88855 0.92960 0.92515 0.92222 0.92829 0.91477 0.92841 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.79 11.67 55.50 0.65 -23.14 16 2 C 0.07 1.96 4.35 -17.47 -0.08 1.89 16 3 Si 0.91 21.33 29.60 -169.99 -5.03 16.30 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.34 -8.80 7.45 -14.93 -0.11 -8.91 16 8 H 0.08 2.02 7.08 -52.49 -0.37 1.65 16 9 N -0.44 -10.26 2.46 -106.53 -0.26 -10.52 16 10 C 0.47 11.63 7.04 -10.99 -0.08 11.56 16 11 O -0.51 -15.06 14.16 -14.37 -0.20 -15.27 16 12 C 0.05 0.87 3.53 36.01 0.13 1.00 16 13 O -0.28 -5.47 9.67 -39.39 -0.38 -5.85 16 14 C 0.13 1.98 6.68 -39.28 -0.26 1.72 16 15 C -0.18 -2.34 9.03 -39.32 -0.36 -2.70 16 16 C -0.09 -1.05 10.02 -39.67 -0.40 -1.45 16 17 C -0.11 -1.27 9.59 -39.09 -0.38 -1.65 16 18 C -0.16 -1.89 5.87 -105.08 -0.62 -2.51 16 19 C 0.39 4.09 11.46 34.36 0.39 4.48 16 20 O -0.46 -6.30 17.16 5.58 0.10 -6.21 16 21 C -0.10 -1.38 9.73 -38.94 -0.38 -1.76 16 22 C 0.13 2.30 3.20 -66.80 -0.21 2.08 16 23 C -0.13 -2.18 6.42 -25.03 -0.16 -2.34 16 24 C -0.12 -1.69 6.91 -24.70 -0.17 -1.86 16 25 C -0.12 -1.65 6.83 -25.07 -0.17 -1.82 16 26 C -0.13 -2.08 6.19 -25.61 -0.16 -2.24 16 27 H 0.26 7.35 8.32 -40.82 -0.34 7.01 16 28 H 0.07 1.13 7.27 -51.93 -0.38 0.76 16 29 H 0.07 1.25 7.34 -51.93 -0.38 0.87 16 30 H 0.13 1.53 6.28 -52.49 -0.33 1.20 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.13 1.40 7.64 -52.49 -0.40 1.00 16 33 H 0.11 0.74 8.06 -52.48 -0.42 0.31 16 34 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.06 0.96 5.82 -51.93 -0.30 0.66 16 36 H 0.09 1.95 7.10 -51.93 -0.37 1.58 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.39 6.85 -51.93 -0.36 1.04 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -33.36 357.10 -8.59 -41.94 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.83 Total: 1.87 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -3.01 Total: -4.51 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.39 Total: -33.66 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.49 Total: -27.33 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.36 -8.59 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265663396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.394 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds