Wall clock time and date at job start Tue Mar 31 2020 11:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86802 * 119.99697 * 2 1 4 4 H 1.48504 * 109.47045 * 269.99735 * 3 2 1 5 5 H 1.48494 * 109.47414 * 29.99672 * 3 2 1 6 6 H 1.48498 * 109.46847 * 150.00071 * 3 2 1 7 7 C 1.38947 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99956 * 199.10009 * 7 2 1 9 9 N 1.37099 * 119.99870 * 19.09905 * 7 2 1 10 10 C 1.34770 * 120.00170 * 42.78960 * 9 7 2 11 11 O 1.21300 * 120.00038 * 0.27243 * 10 9 7 12 12 C 1.50703 * 120.00336 * 180.27337 * 10 9 7 13 13 O 1.42897 * 109.47043 * 179.97438 * 12 10 9 14 14 C 1.35918 * 116.99652 * 180.02562 * 13 12 10 15 15 C 1.38888 * 119.97227 * 359.71869 * 14 13 12 16 16 C 1.38293 * 120.29665 * 179.76511 * 15 14 13 17 17 C 1.37936 * 120.23093 * 0.51475 * 16 15 14 18 18 C 1.39836 * 119.93578 * 359.74814 * 17 16 15 19 19 C 1.47185 * 120.14357 * 180.02562 * 18 17 16 20 20 O 1.21255 * 120.00188 * 359.97438 * 19 18 17 21 21 C 1.38390 * 119.96696 * 180.02562 * 14 13 12 22 22 C 1.46506 * 119.99922 * 223.06199 * 9 7 2 23 23 C 1.54271 * 110.03175 * 59.61208 * 22 9 7 24 24 C 1.54965 * 104.15832 * 217.13584 * 23 22 9 25 25 C 1.54889 * 102.77661 * 37.89061 * 24 23 22 26 26 C 1.53878 * 110.03000 * 302.39586 * 22 9 7 27 27 H 0.96997 * 120.00006 * 354.78176 * 1 2 3 28 28 H 1.08993 * 109.46984 * 299.99925 * 12 10 9 29 29 H 1.09005 * 109.46838 * 60.00073 * 12 10 9 30 30 H 1.07998 * 119.85239 * 0.02562 * 15 14 13 31 31 H 1.07998 * 119.88151 * 180.26344 * 16 15 14 32 32 H 1.07995 * 120.02935 * 179.76046 * 17 16 15 33 33 H 1.08004 * 120.00281 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.11928 * 359.95397 * 21 14 13 35 35 H 1.09003 * 110.01441 * 181.00517 * 22 9 7 36 36 H 1.09000 * 110.48284 * 335.78586 * 23 22 9 37 37 H 1.08997 * 110.47925 * 98.42569 * 23 22 9 38 38 H 1.08998 * 110.71732 * 279.57557 * 24 23 22 39 39 H 1.08995 * 110.91942 * 156.29685 * 24 23 22 40 40 H 1.09000 * 110.48390 * 203.40705 * 25 24 23 41 41 H 1.08995 * 110.60199 * 80.81768 * 25 24 23 42 42 H 1.08998 * 110.02945 * 238.56473 * 26 22 9 43 43 H 1.08996 * 110.03085 * 359.97438 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0090 -1.2033 0.0005 8 1 3.0444 -1.2289 0.3066 9 7 1.3801 -2.3581 -0.3874 10 6 0.5743 -2.3564 -1.4677 11 8 0.4093 -1.3342 -2.0997 12 6 -0.1219 -3.6243 -1.8906 13 8 -0.9132 -3.3684 -3.0526 14 6 -1.6116 -4.4152 -3.5663 15 6 -1.5307 -5.6648 -2.9656 16 6 -2.2422 -6.7334 -3.4798 17 6 -3.0299 -6.5687 -4.6001 18 6 -3.1141 -5.3161 -5.2159 19 6 -3.9536 -5.1350 -6.4112 20 8 -4.5737 -6.0733 -6.8644 21 6 -2.3976 -4.2363 -4.6912 22 6 1.5793 -3.5927 0.3758 23 6 1.1192 -3.3921 1.8346 24 6 2.1446 -4.1999 2.6699 25 6 3.4754 -3.9426 1.9204 26 6 3.0767 -3.9429 0.4302 27 1 -0.4850 0.8365 0.0764 28 1 0.6214 -4.3884 -2.1178 29 1 -0.7655 -3.9722 -1.0826 30 1 -0.9127 -5.8017 -2.0906 31 1 -2.1778 -7.7012 -3.0048 32 1 -3.5811 -7.4063 -5.0012 33 1 -4.0173 -4.1664 -6.8848 34 1 -2.4579 -3.2660 -5.1615 35 1 1.0213 -4.4090 -0.0828 36 1 1.1549 -2.3366 2.1041 37 1 0.1139 -3.7891 1.9754 38 1 1.8965 -5.2612 2.6634 39 1 2.1974 -3.8232 3.6913 40 1 4.1887 -4.7412 2.1246 41 1 3.8943 -2.9768 2.2030 42 1 3.2452 -4.9296 -0.0012 43 1 3.6550 -3.1946 -0.1117 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265663396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:33 Heat of formation + Delta-G solvation = -87.602668 kcal Electronic energy + Delta-G solvation = -26392.172318 eV Core-core repulsion = 22595.620767 eV Total energy + Delta-G solvation = -3796.551551 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.43129 -40.59146 -39.87262 -38.42760 -37.73531 -35.16684 -33.60817 -32.53055 -31.30284 -29.54832 -29.35800 -28.36194 -26.42609 -25.51862 -23.61733 -22.24348 -21.45124 -21.35278 -20.83002 -19.18974 -18.43278 -17.72611 -17.28030 -17.14391 -17.06525 -16.71818 -16.50715 -16.16089 -15.70113 -15.51494 -15.35662 -15.04815 -14.80293 -14.69045 -14.34506 -14.08797 -13.65570 -13.51397 -13.21009 -12.88548 -12.78920 -12.73672 -12.50570 -12.26160 -12.17033 -12.06554 -11.97492 -11.80994 -11.75303 -11.35156 -11.30502 -10.85495 -10.75449 -10.08078 -10.03014 -9.28515 -9.07399 -8.19214 -5.93495 -0.41548 0.39444 1.36491 1.44793 1.45656 1.49521 1.91422 2.25664 2.44449 2.78611 3.17742 3.25664 3.35878 3.71194 3.86621 3.90712 3.93520 3.99722 4.12161 4.17217 4.26191 4.29218 4.35296 4.42136 4.52134 4.56448 4.72329 4.83719 4.85689 4.93020 4.97755 5.14836 5.16063 5.21280 5.30269 5.32936 5.39040 5.45062 5.55181 5.60400 5.64369 5.71278 6.22015 6.36991 6.41394 7.03508 7.22523 7.68347 8.32484 8.90141 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014833 B = 0.003551 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.283914 B = 7882.987325 C = 9395.299035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.022 3.978 3 Si 0.962 3.038 4 H -0.294 1.294 5 H -0.284 1.284 6 H -0.252 1.252 7 C -0.343 4.343 8 H 0.084 0.916 9 N -0.450 5.450 10 C 0.454 3.546 11 O -0.577 6.577 12 C 0.062 3.938 13 O -0.318 6.318 14 C 0.093 3.907 15 C -0.179 4.179 16 C -0.087 4.087 17 C -0.110 4.110 18 C -0.163 4.163 19 C 0.398 3.602 20 O -0.495 6.495 21 C -0.110 4.110 22 C 0.117 3.883 23 C -0.127 4.127 24 C -0.110 4.110 25 C -0.114 4.114 26 C -0.128 4.128 27 H 0.257 0.743 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.163 0.837 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.562 -15.332 -0.942 15.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.184 4.184 3 Si 0.788 3.212 4 H -0.221 1.221 5 H -0.210 1.210 6 H -0.176 1.176 7 C -0.470 4.470 8 H 0.102 0.898 9 N -0.173 5.173 10 C 0.242 3.758 11 O -0.457 6.457 12 C -0.016 4.016 13 O -0.231 6.231 14 C 0.048 3.952 15 C -0.198 4.198 16 C -0.105 4.105 17 C -0.129 4.129 18 C -0.164 4.164 19 C 0.258 3.742 20 O -0.370 6.370 21 C -0.129 4.129 22 C 0.014 3.986 23 C -0.165 4.165 24 C -0.148 4.148 25 C -0.152 4.152 26 C -0.166 4.166 27 H 0.066 0.934 28 H 0.123 0.877 29 H 0.108 0.892 30 H 0.166 0.834 31 H 0.180 0.820 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.110 -14.995 -1.621 15.123 hybrid contribution 0.274 1.454 0.263 1.503 sum -0.837 -13.541 -1.359 13.635 Atomic orbital electron populations 1.69935 1.07967 1.27438 1.44999 1.25981 0.95371 1.02441 0.94646 0.85427 0.79272 0.79136 0.77357 1.22141 1.21006 1.17558 1.19055 0.95303 0.85005 1.47659 0.89835 1.43509 1.43013 1.08814 1.21957 1.20316 0.84116 0.89223 0.82188 1.90524 1.63946 1.35636 1.55611 1.22539 0.94700 0.97297 0.87070 1.86195 1.58835 1.34526 1.43549 1.19417 0.93726 0.87386 0.94720 1.21819 1.03382 0.92059 1.02515 1.21263 0.94565 0.99388 0.95267 1.21567 0.98650 0.96919 0.95734 1.20889 1.01340 0.94074 1.00074 1.24565 0.74666 0.93780 0.81150 1.90503 1.38497 1.46472 1.61534 1.20799 0.96761 1.00305 0.95000 1.22137 0.97098 0.86679 0.92722 1.22605 0.98691 1.00485 0.94735 1.22416 0.93982 1.00246 0.98129 1.22254 0.97657 1.01304 0.93983 1.22437 0.94833 1.01434 0.97923 0.93368 0.87683 0.89223 0.83379 0.81978 0.84081 0.83582 0.83615 0.89154 0.93372 0.92274 0.89419 0.91473 0.89619 0.93408 0.89494 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.30 11.67 21.66 0.25 -52.05 16 2 C 0.02 1.23 4.35 84.92 0.37 1.60 16 3 Si 0.96 45.38 29.60 68.60 2.03 47.41 16 4 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -10.81 7.11 99.48 0.71 -10.11 16 7 C -0.34 -18.11 7.45 84.04 0.63 -17.48 16 8 H 0.08 4.26 7.08 -2.91 -0.02 4.24 16 9 N -0.45 -21.21 2.46 -609.35 -1.50 -22.70 16 10 C 0.45 22.84 7.04 87.66 0.62 23.46 16 11 O -0.58 -35.60 14.16 15.95 0.23 -35.38 16 12 C 0.06 2.30 3.53 71.24 0.25 2.55 16 13 O -0.32 -12.57 9.67 -73.59 -0.71 -13.28 16 14 C 0.09 2.81 6.68 22.46 0.15 2.96 16 15 C -0.18 -4.21 9.03 22.44 0.20 -4.01 16 16 C -0.09 -1.67 10.02 22.21 0.22 -1.44 16 17 C -0.11 -2.31 9.59 22.59 0.22 -2.09 16 18 C -0.16 -3.63 5.87 -20.16 -0.12 -3.74 16 19 C 0.40 7.63 11.46 70.17 0.80 8.43 16 20 O -0.49 -12.66 17.16 -2.95 -0.05 -12.71 16 21 C -0.11 -2.87 9.73 22.68 0.22 -2.65 16 22 C 0.12 4.04 3.20 45.72 0.15 4.19 16 23 C -0.13 -4.25 6.42 31.70 0.20 -4.05 16 24 C -0.11 -2.68 6.91 31.91 0.22 -2.46 16 25 C -0.11 -2.89 6.83 31.67 0.22 -2.68 16 26 C -0.13 -3.74 6.19 31.32 0.19 -3.55 16 27 H 0.26 15.11 8.32 -92.71 -0.77 14.34 16 28 H 0.11 3.08 7.27 -2.39 -0.02 3.06 16 29 H 0.09 2.94 7.34 -2.38 -0.02 2.92 16 30 H 0.15 2.91 6.28 -2.91 -0.02 2.89 16 31 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 32 H 0.14 2.66 7.64 -2.91 -0.02 2.64 16 33 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.09 2.56 5.82 -2.39 -0.01 2.54 16 36 H 0.05 2.06 7.10 -2.39 -0.02 2.04 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.05 1.73 6.85 -2.39 -0.02 1.71 16 Total: -1.00 -78.42 357.10 5.81 -72.60 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.02 Total: 17.06 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 4.54 Total: -0.96 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -1.25 Total: -74.75 kcal Atomic # 8 Polarization: -60.83 SS G_CDS: -0.54 Total: -61.36 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -78.42 5.81 -72.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265663396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.999 kcal (2) G-P(sol) polarization free energy of solvation -78.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds