Wall clock time and date at job start Tue Mar 31 2020 11:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 120.00021 * 2 1 4 4 H 1.48500 * 109.46968 * 239.99596 * 3 2 1 5 5 H 1.48491 * 109.47338 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47396 * 120.00144 * 3 2 1 7 7 C 1.38950 * 119.99529 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99472 * 159.87398 * 7 2 1 9 9 N 1.37095 * 120.00581 * 339.87443 * 7 2 1 10 10 C 1.34775 * 119.99850 * 317.56194 * 9 7 2 11 11 O 1.21294 * 120.00086 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99878 * 179.97438 * 10 9 7 13 13 O 1.42898 * 109.46962 * 179.97438 * 12 10 9 14 14 C 1.35671 * 116.99988 * 180.02562 * 13 12 10 15 15 C 1.39077 * 119.88590 * 359.72267 * 14 13 12 16 16 C 1.37118 * 120.11830 * 179.72549 * 15 14 13 17 17 C 1.40043 * 119.87826 * 0.56964 * 16 15 14 18 18 C 1.46857 * 120.10852 * 179.67940 * 17 16 15 19 19 O 1.21299 * 119.99543 * 180.02562 * 18 17 16 20 20 C 1.40039 * 119.77280 * 359.70639 * 17 16 15 21 21 C 1.37110 * 119.88478 * 359.97438 * 20 17 16 22 22 C 1.46497 * 120.00184 * 137.56007 * 9 7 2 23 23 C 1.54275 * 110.03303 * 299.86003 * 22 9 7 24 24 C 1.54969 * 104.15629 * 95.75318 * 23 22 9 25 25 C 1.54886 * 102.77858 * 37.89059 * 24 23 22 26 26 C 1.53876 * 110.03127 * 57.07712 * 22 9 7 27 27 H 0.97003 * 120.00038 * 355.11556 * 1 2 3 28 28 H 1.08996 * 109.47523 * 299.99726 * 12 10 9 29 29 H 1.09006 * 109.47084 * 59.99944 * 12 10 9 30 30 H 1.08006 * 119.93834 * 0.02562 * 15 14 13 31 31 H 1.08001 * 120.05917 * 180.27548 * 16 15 14 32 32 H 1.08002 * 120.00341 * 0.02737 * 18 17 16 33 33 H 1.08003 * 120.05742 * 179.97438 * 20 17 16 34 34 H 1.07997 * 119.94712 * 179.97438 * 21 20 17 35 35 H 1.09001 * 110.01903 * 178.46975 * 22 9 7 36 36 H 1.08995 * 110.48798 * 214.39916 * 23 22 9 37 37 H 1.09000 * 110.48523 * 337.04635 * 23 22 9 38 38 H 1.09004 * 110.71996 * 279.57434 * 24 23 22 39 39 H 1.08998 * 110.91831 * 156.30020 * 24 23 22 40 40 H 1.09005 * 110.48576 * 203.40230 * 25 24 23 41 41 H 1.08999 * 110.59641 * 80.81777 * 25 24 23 42 42 H 1.08999 * 110.03368 * 359.95152 * 26 22 9 43 43 H 1.09003 * 110.03022 * 121.38551 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0394 -1.2321 -0.3213 9 7 1.3861 -2.3543 0.4095 10 6 0.5915 -2.3402 1.4981 11 8 0.4277 -1.3095 2.1161 12 6 -0.0934 -3.6051 1.9473 13 8 -0.8730 -3.3360 3.1142 14 6 -1.5582 -4.3768 3.6508 15 6 -1.4847 -5.6334 3.0593 16 6 -2.1708 -6.6899 3.6008 17 6 -2.9560 -6.4992 4.7446 18 6 -3.6985 -7.6256 5.3247 19 8 -4.3783 -7.4580 6.3152 20 6 -3.0311 -5.2306 5.3329 21 6 -2.3360 -4.1822 4.7873 22 6 1.5844 -3.5993 -0.3366 23 6 1.1021 -3.4259 -1.7917 24 6 2.3893 -3.0692 -2.5776 25 6 3.4610 -3.9606 -1.9024 26 6 3.0836 -3.9387 -0.4067 27 1 -0.4850 0.8370 0.0715 28 1 -0.7434 -3.9687 1.1516 29 1 0.6564 -4.3619 2.1783 30 1 -0.8823 -5.7783 2.1747 31 1 -2.1095 -7.6663 3.1433 32 1 -3.6392 -8.6032 4.8695 33 1 -3.6356 -5.0782 6.2149 34 1 -2.3935 -3.2034 5.2399 35 1 1.0394 -4.4125 0.1429 36 1 0.6729 -4.3557 -2.1648 37 1 0.3763 -2.6155 -1.8590 38 1 2.6338 -2.0137 -2.4585 39 1 2.2842 -3.3233 -3.6324 40 1 4.4556 -3.5402 -2.0510 41 1 3.4154 -4.9773 -2.2926 42 1 3.6637 -3.1767 0.1137 43 1 3.2662 -4.9167 0.0388 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265684755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:15 Heat of formation + Delta-G solvation = -69.205320 kcal Electronic energy + Delta-G solvation = -26429.865517 eV Core-core repulsion = 22634.111735 eV Total energy + Delta-G solvation = -3795.753782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33947 -39.25798 -38.67947 -37.15621 -36.34174 -33.24440 -31.79537 -31.36638 -30.44869 -28.21446 -28.10174 -27.05664 -24.72838 -23.94437 -22.78824 -21.00726 -20.33498 -19.92278 -19.23809 -18.18681 -17.01579 -16.52408 -16.07751 -15.88793 -15.81738 -15.11237 -14.85074 -14.58396 -14.40185 -14.31473 -14.05425 -13.74387 -13.50349 -13.40101 -13.06480 -12.78170 -12.58410 -12.13247 -11.92999 -11.46254 -11.16798 -11.03696 -10.91341 -10.76745 -10.67529 -10.63385 -10.57900 -10.43808 -10.34117 -10.02323 -9.91041 -9.86319 -9.21021 -8.78616 -8.22343 -8.16603 -7.21543 -6.15222 -3.90897 0.64560 1.29031 2.39027 3.16681 3.31175 3.37914 3.41404 3.74717 4.02826 4.16587 4.31393 4.59666 4.73374 4.88507 5.03157 5.13065 5.15641 5.19649 5.24311 5.30855 5.42358 5.45794 5.54202 5.65771 5.73814 5.82687 5.89233 6.01425 6.06890 6.14427 6.16243 6.23161 6.25100 6.30220 6.40274 6.41811 6.55221 6.61918 6.81340 6.93354 7.07037 7.32258 7.46042 7.60213 8.21067 8.96100 9.08370 9.57323 10.15672 10.92352 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.003400 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.496906 B = 8232.486892 C = 9545.429292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.338 4.338 8 H 0.082 0.918 9 N -0.440 5.440 10 C 0.473 3.527 11 O -0.513 6.513 12 C 0.043 3.957 13 O -0.275 6.275 14 C 0.181 3.819 15 C -0.233 4.233 16 C -0.023 4.023 17 C -0.252 4.252 18 C 0.388 3.612 19 O -0.475 6.475 20 C -0.017 4.017 21 C -0.171 4.171 22 C 0.127 3.873 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.132 4.132 27 H 0.265 0.735 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.099 0.901 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 -14.639 0.292 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.464 4.464 8 H 0.100 0.900 9 N -0.164 5.164 10 C 0.258 3.742 11 O -0.389 6.389 12 C -0.035 4.035 13 O -0.185 6.185 14 C 0.132 3.868 15 C -0.251 4.251 16 C -0.041 4.041 17 C -0.253 4.253 18 C 0.249 3.751 19 O -0.350 6.350 20 C -0.036 4.036 21 C -0.190 4.190 22 C 0.022 3.978 23 C -0.162 4.162 24 C -0.154 4.154 25 C -0.156 4.156 26 C -0.170 4.170 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.115 0.885 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.274 -13.663 1.140 13.770 hybrid contribution 0.491 0.553 -0.404 0.842 sum -0.783 -13.110 0.737 13.155 Atomic orbital electron populations 1.69861 1.06517 1.28026 1.41767 1.25144 0.94677 0.99288 0.94640 0.86411 0.79501 0.82565 0.78430 1.20375 1.21277 1.20055 1.18777 0.95155 0.84490 1.47952 0.90048 1.43221 1.44406 1.07458 1.21310 1.19319 0.84413 0.87948 0.82502 1.90576 1.61474 1.32242 1.54592 1.22905 0.94255 1.00371 0.85994 1.86226 1.57745 1.32407 1.42139 1.19661 0.88915 0.86809 0.91419 1.21186 1.07041 0.92842 1.04060 1.21003 0.91909 0.98450 0.92743 1.20720 1.06896 0.96631 1.01042 1.23846 0.76350 0.92191 0.82749 1.90516 1.33640 1.87021 1.23792 1.21060 0.94217 0.90850 0.97428 1.20370 1.00838 1.00932 0.96864 1.21751 0.94904 0.88019 0.93127 1.22583 0.98357 1.00606 0.94631 1.22454 0.94762 1.01073 0.97125 1.22275 0.98809 0.98946 0.95602 1.22501 0.97119 1.00716 0.96664 0.92453 0.90548 0.90686 0.84713 0.84963 0.88455 0.84582 0.84420 0.92099 0.93042 0.89965 0.90039 0.93174 0.92454 0.92754 0.90339 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.66 11.71 55.50 0.65 -23.01 16 2 C 0.07 1.97 4.32 -17.47 -0.08 1.90 16 3 Si 0.90 21.31 29.60 -169.99 -5.03 16.27 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.34 -8.53 6.98 -14.93 -0.10 -8.64 16 8 H 0.08 1.99 6.88 -52.48 -0.36 1.63 16 9 N -0.44 -10.06 2.40 -106.54 -0.26 -10.32 16 10 C 0.47 11.47 7.05 -10.99 -0.08 11.40 16 11 O -0.51 -14.99 14.15 -14.37 -0.20 -15.19 16 12 C 0.04 0.80 3.53 36.00 0.13 0.93 16 13 O -0.28 -5.37 9.65 -38.63 -0.37 -5.74 16 14 C 0.18 2.80 6.70 -38.96 -0.26 2.54 16 15 C -0.23 -2.87 8.99 -39.68 -0.36 -3.23 16 16 C -0.02 -0.23 9.77 -39.31 -0.38 -0.61 16 17 C -0.25 -2.79 5.87 -105.06 -0.62 -3.40 16 18 C 0.39 3.79 11.44 34.22 0.39 4.19 16 19 O -0.47 -6.43 17.16 5.54 0.10 -6.34 16 20 C -0.02 -0.22 9.57 -39.32 -0.38 -0.59 16 21 C -0.17 -2.44 9.95 -39.68 -0.39 -2.83 16 22 C 0.13 2.24 3.26 -66.81 -0.22 2.03 16 23 C -0.12 -2.11 6.13 -25.02 -0.15 -2.26 16 24 C -0.12 -1.85 6.56 -24.70 -0.16 -2.01 16 25 C -0.12 -1.66 6.83 -25.07 -0.17 -1.83 16 26 C -0.13 -2.05 6.19 -25.61 -0.16 -2.21 16 27 H 0.27 7.44 8.32 -40.82 -0.34 7.10 16 28 H 0.08 1.27 7.32 -51.93 -0.38 0.89 16 29 H 0.08 1.15 7.28 -51.93 -0.38 0.77 16 30 H 0.14 1.46 6.27 -52.48 -0.33 1.13 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.10 0.55 8.06 -52.49 -0.42 0.12 16 33 H 0.14 1.58 7.64 -52.48 -0.40 1.18 16 34 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 35 H 0.06 0.92 5.83 -51.93 -0.30 0.62 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.71 8.02 -51.93 -0.42 1.29 16 38 H 0.08 1.50 7.16 -51.93 -0.37 1.13 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.40 6.82 -51.93 -0.35 1.04 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -33.29 355.55 -8.56 -41.85 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.81 Total: 1.75 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.99 Total: -4.64 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.39 Total: -33.32 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.48 Total: -27.27 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.29 -8.56 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265684755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.355 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds