Wall clock time and date at job start Tue Mar 31 2020 11:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 120.00021 * 2 1 4 4 H 1.48500 * 109.46968 * 239.99596 * 3 2 1 5 5 H 1.48491 * 109.47338 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47396 * 120.00144 * 3 2 1 7 7 C 1.38950 * 119.99529 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99472 * 159.87398 * 7 2 1 9 9 N 1.37095 * 120.00581 * 339.87443 * 7 2 1 10 10 C 1.34775 * 119.99850 * 317.56194 * 9 7 2 11 11 O 1.21294 * 120.00086 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99878 * 179.97438 * 10 9 7 13 13 O 1.42898 * 109.46962 * 179.97438 * 12 10 9 14 14 C 1.35671 * 116.99988 * 180.02562 * 13 12 10 15 15 C 1.39077 * 119.88590 * 359.72267 * 14 13 12 16 16 C 1.37118 * 120.11830 * 179.72549 * 15 14 13 17 17 C 1.40043 * 119.87826 * 0.56964 * 16 15 14 18 18 C 1.46857 * 120.10852 * 179.67940 * 17 16 15 19 19 O 1.21299 * 119.99543 * 180.02562 * 18 17 16 20 20 C 1.40039 * 119.77280 * 359.70639 * 17 16 15 21 21 C 1.37110 * 119.88478 * 359.97438 * 20 17 16 22 22 C 1.46497 * 120.00184 * 137.56007 * 9 7 2 23 23 C 1.54275 * 110.03303 * 299.86003 * 22 9 7 24 24 C 1.54969 * 104.15629 * 95.75318 * 23 22 9 25 25 C 1.54886 * 102.77858 * 37.89059 * 24 23 22 26 26 C 1.53876 * 110.03127 * 57.07712 * 22 9 7 27 27 H 0.97003 * 120.00038 * 355.11556 * 1 2 3 28 28 H 1.08996 * 109.47523 * 299.99726 * 12 10 9 29 29 H 1.09006 * 109.47084 * 59.99944 * 12 10 9 30 30 H 1.08006 * 119.93834 * 0.02562 * 15 14 13 31 31 H 1.08001 * 120.05917 * 180.27548 * 16 15 14 32 32 H 1.08002 * 120.00341 * 0.02737 * 18 17 16 33 33 H 1.08003 * 120.05742 * 179.97438 * 20 17 16 34 34 H 1.07997 * 119.94712 * 179.97438 * 21 20 17 35 35 H 1.09001 * 110.01903 * 178.46975 * 22 9 7 36 36 H 1.08995 * 110.48798 * 214.39916 * 23 22 9 37 37 H 1.09000 * 110.48523 * 337.04635 * 23 22 9 38 38 H 1.09004 * 110.71996 * 279.57434 * 24 23 22 39 39 H 1.08998 * 110.91831 * 156.30020 * 24 23 22 40 40 H 1.09005 * 110.48576 * 203.40230 * 25 24 23 41 41 H 1.08999 * 110.59641 * 80.81777 * 25 24 23 42 42 H 1.08999 * 110.03368 * 359.95152 * 26 22 9 43 43 H 1.09003 * 110.03022 * 121.38551 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0394 -1.2321 -0.3213 9 7 1.3861 -2.3543 0.4095 10 6 0.5915 -2.3402 1.4981 11 8 0.4277 -1.3095 2.1161 12 6 -0.0934 -3.6051 1.9473 13 8 -0.8730 -3.3360 3.1142 14 6 -1.5582 -4.3768 3.6508 15 6 -1.4847 -5.6334 3.0593 16 6 -2.1708 -6.6899 3.6008 17 6 -2.9560 -6.4992 4.7446 18 6 -3.6985 -7.6256 5.3247 19 8 -4.3783 -7.4580 6.3152 20 6 -3.0311 -5.2306 5.3329 21 6 -2.3360 -4.1822 4.7873 22 6 1.5844 -3.5993 -0.3366 23 6 1.1021 -3.4259 -1.7917 24 6 2.3893 -3.0692 -2.5776 25 6 3.4610 -3.9606 -1.9024 26 6 3.0836 -3.9387 -0.4067 27 1 -0.4850 0.8370 0.0715 28 1 -0.7434 -3.9687 1.1516 29 1 0.6564 -4.3619 2.1783 30 1 -0.8823 -5.7783 2.1747 31 1 -2.1095 -7.6663 3.1433 32 1 -3.6392 -8.6032 4.8695 33 1 -3.6356 -5.0782 6.2149 34 1 -2.3935 -3.2034 5.2399 35 1 1.0394 -4.4125 0.1429 36 1 0.6729 -4.3557 -2.1648 37 1 0.3763 -2.6155 -1.8590 38 1 2.6338 -2.0137 -2.4585 39 1 2.2842 -3.3233 -3.6324 40 1 4.4556 -3.5402 -2.0510 41 1 3.4154 -4.9773 -2.2926 42 1 3.6637 -3.1767 0.1137 43 1 3.2662 -4.9167 0.0388 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265684755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:14 Heat of formation + Delta-G solvation = -89.084798 kcal Electronic energy + Delta-G solvation = -26430.727556 eV Core-core repulsion = 22634.111735 eV Total energy + Delta-G solvation = -3796.615821 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49410 -40.59854 -39.85172 -38.42746 -37.74523 -35.06347 -33.59478 -32.38689 -31.46805 -29.72788 -29.36127 -28.48573 -26.29290 -25.10697 -23.81115 -22.17260 -21.63742 -21.20089 -20.80296 -19.38046 -18.38851 -17.72008 -17.57753 -17.26754 -17.01884 -16.65262 -16.16755 -15.83420 -15.74767 -15.37547 -15.28977 -15.13001 -14.92767 -14.49628 -14.38131 -14.04904 -13.77477 -13.43503 -13.31481 -13.23129 -12.85892 -12.72200 -12.39122 -12.30581 -12.05083 -11.96973 -11.89710 -11.77647 -11.72335 -11.45338 -11.14870 -10.73860 -10.73142 -10.13615 -10.05389 -9.29124 -9.12381 -8.18014 -5.93080 -0.27053 0.36126 1.35816 1.44516 1.47365 1.54141 1.88366 2.24935 2.43992 2.82846 3.18134 3.29193 3.46037 3.68877 3.83477 3.88988 3.90388 3.98108 4.09704 4.23179 4.25467 4.32887 4.40151 4.49288 4.61065 4.64555 4.76273 4.86583 4.92084 5.00032 5.00496 5.14940 5.18891 5.24468 5.27433 5.32410 5.36831 5.49815 5.52415 5.62118 5.69163 5.77288 6.21190 6.35407 6.58527 7.03480 7.22243 7.68118 8.30887 8.88521 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.003400 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.496906 B = 8232.486892 C = 9545.429292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.022 3.978 3 Si 0.952 3.048 4 H -0.255 1.255 5 H -0.294 1.294 6 H -0.285 1.285 7 C -0.332 4.332 8 H 0.085 0.915 9 N -0.449 5.449 10 C 0.453 3.547 11 O -0.580 6.580 12 C 0.060 3.940 13 O -0.318 6.318 14 C 0.146 3.854 15 C -0.230 4.230 16 C -0.004 4.004 17 C -0.252 4.252 18 C 0.399 3.601 19 O -0.517 6.517 20 C -0.028 4.028 21 C -0.191 4.191 22 C 0.116 3.884 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.109 4.109 26 C -0.128 4.128 27 H 0.254 0.746 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.157 0.843 31 H 0.186 0.814 32 H 0.160 0.840 33 H 0.136 0.864 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.034 0.966 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 -19.659 -1.087 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.180 1.180 5 H -0.220 1.220 6 H -0.211 1.211 7 C -0.459 4.459 8 H 0.103 0.897 9 N -0.171 5.171 10 C 0.240 3.760 11 O -0.461 6.461 12 C -0.018 4.018 13 O -0.230 6.230 14 C 0.099 3.901 15 C -0.248 4.248 16 C -0.021 4.021 17 C -0.253 4.253 18 C 0.262 3.738 19 O -0.394 6.394 20 C -0.046 4.046 21 C -0.210 4.210 22 C 0.013 3.987 23 C -0.159 4.159 24 C -0.156 4.156 25 C -0.146 4.146 26 C -0.167 4.167 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.130 0.870 30 H 0.174 0.826 31 H 0.204 0.796 32 H 0.176 0.824 33 H 0.154 0.846 34 H 0.140 0.860 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.403 -18.729 -0.285 18.736 hybrid contribution 0.217 1.968 0.072 1.981 sum -0.185 -16.762 -0.213 16.764 Atomic orbital electron populations 1.69977 1.07830 1.27617 1.44761 1.25870 0.95207 1.02202 0.95085 0.85650 0.78390 0.79485 0.78690 1.17957 1.22048 1.21072 1.18982 0.95278 0.85664 1.45990 0.89732 1.43499 1.43497 1.08599 1.21533 1.20372 0.84174 0.89294 0.82136 1.90527 1.63682 1.35159 1.56694 1.22653 0.95131 0.97363 0.86689 1.86152 1.59114 1.34992 1.42788 1.19931 0.90145 0.87545 0.92477 1.21481 1.07214 0.91735 1.04412 1.21507 0.89381 0.99882 0.91365 1.21172 1.06588 0.96356 1.01174 1.24583 0.74274 0.93409 0.81561 1.90529 1.35355 1.87634 1.25847 1.21174 0.94138 0.91580 0.97716 1.20396 1.02013 1.01086 0.97490 1.22149 0.97149 0.86365 0.93080 1.22549 0.97869 1.00684 0.94759 1.22418 0.95033 0.99430 0.98708 1.22254 0.98057 1.00277 0.94017 1.22481 0.94706 1.01551 0.97940 0.93672 0.88543 0.87021 0.82566 0.79642 0.82406 0.84609 0.86035 0.88792 0.89193 0.94693 0.93813 0.90890 0.92045 0.89322 0.93316 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.47 11.71 21.66 0.25 -52.22 16 2 C 0.02 1.26 4.32 84.93 0.37 1.63 16 3 Si 0.95 45.67 29.60 68.60 2.03 47.70 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.33 -17.33 6.98 84.04 0.59 -16.74 16 8 H 0.09 4.25 6.88 -2.91 -0.02 4.23 16 9 N -0.45 -20.77 2.40 -609.37 -1.46 -22.23 16 10 C 0.45 22.58 7.05 87.66 0.62 23.20 16 11 O -0.58 -35.91 14.15 15.96 0.23 -35.69 16 12 C 0.06 2.15 3.53 71.23 0.25 2.40 16 13 O -0.32 -12.80 9.65 -70.84 -0.68 -13.48 16 14 C 0.15 4.51 6.70 22.67 0.15 4.66 16 15 C -0.23 -4.90 8.99 22.21 0.20 -4.70 16 16 C 0.00 -0.05 9.77 22.44 0.22 0.16 16 17 C -0.25 -4.76 5.87 -20.15 -0.12 -4.88 16 18 C 0.40 6.12 11.44 70.08 0.80 6.92 16 19 O -0.52 -12.85 17.16 -3.09 -0.05 -12.90 16 20 C -0.03 -0.69 9.57 22.44 0.21 -0.47 16 21 C -0.19 -5.69 9.95 22.21 0.22 -5.47 16 22 C 0.12 3.84 3.26 45.72 0.15 3.99 16 23 C -0.12 -3.89 6.13 31.70 0.19 -3.69 16 24 C -0.12 -3.53 6.56 31.91 0.21 -3.32 16 25 C -0.11 -2.62 6.83 31.67 0.22 -2.41 16 26 C -0.13 -3.60 6.19 31.32 0.19 -3.40 16 27 H 0.25 15.28 8.32 -92.71 -0.77 14.51 16 28 H 0.10 3.01 7.32 -2.39 -0.02 3.00 16 29 H 0.11 3.09 7.28 -2.38 -0.02 3.08 16 30 H 0.16 2.59 6.27 -2.91 -0.02 2.57 16 31 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 32 H 0.16 0.66 8.06 -2.91 -0.02 0.63 16 33 H 0.14 3.25 7.64 -2.91 -0.02 3.23 16 34 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 35 H 0.09 2.46 5.83 -2.39 -0.01 2.45 16 36 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.03 1.46 8.02 -2.39 -0.02 1.44 16 38 H 0.04 1.62 7.16 -2.38 -0.02 1.60 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.05 1.66 6.82 -2.39 -0.02 1.65 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -82.17 355.55 5.81 -76.37 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 1.02 Total: 14.58 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 4.48 Total: -2.13 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -1.21 Total: -74.45 kcal Atomic # 8 Polarization: -61.56 SS G_CDS: -0.51 Total: -62.07 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -82.17 5.81 -76.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265684755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.718 kcal (2) G-P(sol) polarization free energy of solvation -82.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds