Wall clock time and date at job start Tue Mar 31 2020 11:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86796 * 120.00204 * 2 1 4 4 H 1.48505 * 109.47327 * 240.00061 * 3 2 1 5 5 H 1.48494 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46832 * 120.00500 * 3 2 1 7 7 C 1.38662 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99419 * 179.97438 * 7 2 1 9 9 O 1.34821 * 120.00230 * 0.02562 * 7 2 1 10 10 C 1.35755 * 117.00171 * 185.08027 * 9 7 2 11 11 C 1.38878 * 120.06844 * 173.94289 * 10 9 7 12 12 C 1.38103 * 119.92717 * 179.76342 * 11 10 9 13 13 C 1.38309 * 120.06982 * 0.48538 * 12 11 10 14 14 C 1.50695 * 119.93312 * 179.74734 * 13 12 11 15 15 N 1.46901 * 109.47024 * 270.02129 * 14 13 12 16 16 C 1.46899 * 111.00098 * 184.83447 * 15 14 13 17 17 H 1.09004 * 109.47234 * 320.93835 * 16 15 14 18 18 C 1.53000 * 109.47212 * 80.93983 * 16 15 14 19 19 C 1.52996 * 109.46974 * 185.63608 * 18 16 15 20 20 O 1.42902 * 109.46725 * 184.80039 * 19 18 16 21 21 C 1.50696 * 109.47046 * 200.94155 * 16 15 14 22 22 C 1.34515 * 125.78802 * 140.00137 * 21 16 15 23 23 C 1.41387 * 106.84207 * 180.02562 * 22 21 16 24 24 C 1.34512 * 106.83762 * 359.97438 * 23 22 21 25 25 O 1.34300 * 108.42431 * 359.74284 * 24 23 22 26 26 C 1.38304 * 120.13634 * 359.76601 * 13 12 11 27 27 C 1.38105 * 120.06985 * 0.02562 * 26 13 12 28 28 H 0.97000 * 120.00065 * 359.97438 * 1 2 3 29 29 H 1.07990 * 120.03664 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.96974 * 180.23328 * 12 11 10 31 31 H 1.09004 * 109.47013 * 30.01634 * 14 13 12 32 32 H 1.09003 * 109.47405 * 150.02050 * 14 13 12 33 33 H 1.00903 * 111.00224 * 308.78867 * 15 14 13 34 34 H 1.08997 * 109.47146 * 305.63824 * 18 16 15 35 35 H 1.09003 * 109.46725 * 65.63707 * 18 16 15 36 36 H 1.08996 * 109.47467 * 304.79734 * 19 18 16 37 37 H 1.09001 * 109.47313 * 64.80286 * 19 18 16 38 38 H 0.96708 * 113.99830 * 179.97438 * 20 19 18 39 39 H 1.08004 * 126.58220 * 0.03384 * 22 21 16 40 40 H 1.08002 * 126.58090 * 179.97438 * 23 22 21 41 41 H 1.08006 * 125.78952 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.96629 * 179.97438 * 26 13 12 43 43 H 1.07995 * 120.03451 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6962 1.2124 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0016 10 6 2.0697 -3.5047 0.1050 11 6 1.4362 -4.7335 0.2372 12 6 2.1869 -5.8881 0.3405 13 6 3.5682 -5.8206 0.3226 14 6 4.3843 -7.0818 0.4413 15 7 4.6602 -7.3550 1.8581 16 6 5.5504 -8.5140 2.0072 17 1 5.2810 -9.2756 1.2753 18 6 6.9989 -8.0771 1.7790 19 6 7.9106 -9.3057 1.7949 20 8 9.2736 -8.8886 1.6938 21 6 5.4095 -9.0803 3.3965 22 6 5.3881 -10.3870 3.7150 23 6 5.2404 -10.4641 5.1190 24 6 5.1809 -9.1999 5.5745 25 8 5.2899 -8.3659 4.5276 26 6 4.2020 -4.5978 0.1964 27 6 3.4569 -3.4401 0.0884 28 1 -0.4850 0.8400 0.0004 29 1 0.3578 -4.7865 0.2556 30 1 1.6949 -6.8444 0.4395 31 1 3.8289 -7.9157 0.0120 32 1 5.3253 -6.9576 -0.0947 33 1 5.0455 -6.5420 2.3148 34 1 7.0798 -7.5771 0.8139 35 1 7.3003 -7.3907 2.5703 36 1 7.7663 -9.8532 2.7263 37 1 7.6648 -9.9515 0.9519 38 1 9.9093 -9.6174 1.6982 39 1 5.4684 -11.2179 3.0297 40 1 5.1858 -11.3652 5.7119 41 1 5.0695 -8.9054 6.6077 42 1 5.2808 -4.5482 0.1832 43 1 3.9525 -2.4855 -0.0097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274397052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:32 Heat of formation + Delta-G solvation = -37.545297 kcal Electronic energy + Delta-G solvation = -25270.787706 eV Core-core repulsion = 21476.406805 eV Total energy + Delta-G solvation = -3794.380901 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.67570 -39.13285 -38.09431 -36.97341 -35.95524 -33.18937 -32.53784 -31.94812 -30.16361 -29.50459 -28.98236 -25.85222 -24.97926 -23.45900 -22.46058 -21.94257 -21.70322 -20.49211 -20.22274 -18.00000 -17.77283 -17.71069 -16.93661 -16.20997 -15.71495 -15.40948 -15.25676 -14.75564 -14.53798 -14.20303 -13.94571 -13.90449 -13.65323 -13.45826 -13.07319 -12.93167 -12.85859 -12.68670 -12.46990 -12.34057 -11.92925 -11.69722 -11.55690 -11.42238 -11.22706 -10.77776 -10.67149 -10.60393 -10.43261 -10.34273 -9.98290 -9.33725 -8.84933 -8.66157 -8.44174 -8.16556 -7.19077 -6.44961 -4.03862 1.64017 2.23265 2.26631 2.48916 2.91397 3.13219 3.14428 3.17229 3.75860 3.96882 4.13692 4.43373 4.65224 4.68128 4.85609 4.88796 4.90589 5.00547 5.09095 5.15384 5.18740 5.28989 5.31678 5.40248 5.57935 5.68029 5.69851 5.74688 5.80450 5.80840 5.89861 6.00513 6.21897 6.34249 6.43128 6.70632 6.83676 6.92582 7.04480 7.08749 7.24609 7.27289 7.30454 7.40772 7.44895 7.83216 7.99962 9.00514 9.70669 10.72966 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.002438 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.317256 B =11483.766413 C =11905.553506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.393 4.393 8 H 0.091 0.909 9 O -0.177 6.177 10 C 0.157 3.843 11 C -0.195 4.195 12 C -0.050 4.050 13 C -0.190 4.190 14 C 0.116 3.884 15 N -0.673 5.673 16 C 0.169 3.831 17 H 0.107 0.893 18 C -0.153 4.153 19 C 0.077 3.923 20 O -0.575 6.575 21 C 0.017 3.983 22 C -0.219 4.219 23 C -0.216 4.216 24 C -0.044 4.044 25 O -0.163 6.163 26 C -0.064 4.064 27 C -0.235 4.235 28 H 0.271 0.729 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.350 0.650 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.379 0.621 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.200 0.800 42 H 0.103 0.897 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.135 -20.397 5.785 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.080 6.080 10 C 0.103 3.897 11 C -0.214 4.214 12 C -0.069 4.069 13 C -0.191 4.191 14 C -0.011 4.011 15 N -0.304 5.304 16 C 0.058 3.942 17 H 0.125 0.875 18 C -0.192 4.192 19 C -0.001 4.001 20 O -0.380 6.380 21 C -0.034 4.034 22 C -0.239 4.239 23 C -0.235 4.235 24 C -0.112 4.112 25 O -0.058 6.058 26 C -0.083 4.083 27 C -0.254 4.254 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.170 0.830 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.225 0.775 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.216 0.784 42 H 0.121 0.879 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.808 -19.606 5.835 24.135 hybrid contribution 1.533 0.366 -0.061 1.577 sum 14.341 -19.240 5.773 24.682 Atomic orbital electron populations 1.70028 1.05968 1.27803 1.45929 1.25290 0.95838 0.98835 0.96520 0.85785 0.78709 0.79776 0.79191 1.19507 1.20262 1.19483 1.21281 0.91767 0.80847 1.52983 0.89127 1.83977 1.34384 1.11467 1.78184 1.19411 0.90287 0.88061 0.91932 1.20227 0.99612 0.90375 1.11192 1.20472 0.92813 0.96713 0.96892 1.19061 0.93688 0.93289 1.13059 1.20711 0.97296 0.96053 0.87071 1.60759 1.46667 1.07833 1.15101 1.20015 0.90310 0.95281 0.88566 0.87491 1.22341 0.94130 0.98667 1.04038 1.22185 0.81716 0.96247 0.99991 1.86493 1.16437 1.37738 1.97320 1.22341 1.03806 0.90040 0.87219 1.21484 1.10404 0.95974 0.96020 1.21759 1.08796 0.97973 0.94992 1.24034 1.06302 0.88722 0.92120 1.84060 1.69805 1.37412 1.14507 1.20596 0.98050 0.91934 0.97701 1.21115 0.93820 0.98807 1.11664 0.91948 0.86545 0.87004 0.90819 0.94840 0.82999 0.90014 0.90397 0.93064 0.93574 0.77460 0.83811 0.83718 0.78369 0.87873 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 2 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16 8 H 0.09 2.35 5.21 -52.48 -0.27 2.07 16 9 O -0.18 -5.08 9.76 0.06 0.00 -5.08 16 10 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 11 C -0.19 -4.15 9.99 -39.39 -0.39 -4.54 16 12 C -0.05 -0.90 9.69 -39.60 -0.38 -1.28 16 13 C -0.19 -3.16 5.35 -104.57 -0.56 -3.71 16 14 C 0.12 1.48 5.63 -4.98 -0.03 1.46 16 15 N -0.67 -8.39 6.24 -109.22 -0.68 -9.07 16 16 C 0.17 1.70 2.50 -68.87 -0.17 1.53 16 17 H 0.11 0.93 7.91 -51.93 -0.41 0.52 16 18 C -0.15 -1.48 5.05 -26.73 -0.13 -1.61 16 19 C 0.08 0.64 6.94 37.16 0.26 0.89 16 20 O -0.57 -5.26 13.66 -35.23 -0.48 -5.75 16 21 C 0.02 0.19 5.39 -35.63 -0.19 0.00 16 22 C -0.22 -2.15 10.00 -39.70 -0.40 -2.54 16 23 C -0.22 -2.01 10.91 -39.70 -0.43 -2.45 16 24 C -0.04 -0.43 12.09 29.42 0.36 -0.07 16 25 O -0.16 -2.01 10.65 5.71 0.06 -1.95 16 26 C -0.06 -1.15 9.69 -39.61 -0.38 -1.53 16 27 C -0.23 -5.08 9.17 -39.39 -0.36 -5.45 16 28 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 30 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.03 0.39 6.93 -51.93 -0.36 0.03 16 33 H 0.35 4.64 8.47 -39.29 -0.33 4.31 16 34 H 0.08 0.81 7.01 -51.93 -0.36 0.45 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.42 6.63 -51.93 -0.34 0.07 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.38 1.67 9.12 45.56 0.42 2.08 16 39 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.20 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -33.14 366.80 -7.63 -40.77 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -4.90 Total: 10.12 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -2.89 Total: -25.48 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.08 Total: -33.72 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.42 Total: -12.78 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.14 -7.63 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274397052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.224 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds