Wall clock time and date at job start Tue Mar 31 2020 11:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86796 * 120.00204 * 2 1 4 4 H 1.48505 * 109.47327 * 240.00061 * 3 2 1 5 5 H 1.48494 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46832 * 120.00500 * 3 2 1 7 7 C 1.38662 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99419 * 179.97438 * 7 2 1 9 9 O 1.34821 * 120.00230 * 0.02562 * 7 2 1 10 10 C 1.35755 * 117.00171 * 185.08027 * 9 7 2 11 11 C 1.38878 * 120.06844 * 173.94289 * 10 9 7 12 12 C 1.38103 * 119.92717 * 179.76342 * 11 10 9 13 13 C 1.38309 * 120.06982 * 0.48538 * 12 11 10 14 14 C 1.50695 * 119.93312 * 179.74734 * 13 12 11 15 15 N 1.46901 * 109.47024 * 270.02129 * 14 13 12 16 16 C 1.46899 * 111.00098 * 184.83447 * 15 14 13 17 17 H 1.09004 * 109.47234 * 320.93835 * 16 15 14 18 18 C 1.53000 * 109.47212 * 80.93983 * 16 15 14 19 19 C 1.52996 * 109.46974 * 185.63608 * 18 16 15 20 20 O 1.42902 * 109.46725 * 184.80039 * 19 18 16 21 21 C 1.50696 * 109.47046 * 200.94155 * 16 15 14 22 22 C 1.34515 * 125.78802 * 140.00137 * 21 16 15 23 23 C 1.41387 * 106.84207 * 180.02562 * 22 21 16 24 24 C 1.34512 * 106.83762 * 359.97438 * 23 22 21 25 25 O 1.34300 * 108.42431 * 359.74284 * 24 23 22 26 26 C 1.38304 * 120.13634 * 359.76601 * 13 12 11 27 27 C 1.38105 * 120.06985 * 0.02562 * 26 13 12 28 28 H 0.97000 * 120.00065 * 359.97438 * 1 2 3 29 29 H 1.07990 * 120.03664 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.96974 * 180.23328 * 12 11 10 31 31 H 1.09004 * 109.47013 * 30.01634 * 14 13 12 32 32 H 1.09003 * 109.47405 * 150.02050 * 14 13 12 33 33 H 1.00903 * 111.00224 * 308.78867 * 15 14 13 34 34 H 1.08997 * 109.47146 * 305.63824 * 18 16 15 35 35 H 1.09003 * 109.46725 * 65.63707 * 18 16 15 36 36 H 1.08996 * 109.47467 * 304.79734 * 19 18 16 37 37 H 1.09001 * 109.47313 * 64.80286 * 19 18 16 38 38 H 0.96708 * 113.99830 * 179.97438 * 20 19 18 39 39 H 1.08004 * 126.58220 * 0.03384 * 22 21 16 40 40 H 1.08002 * 126.58090 * 179.97438 * 23 22 21 41 41 H 1.08006 * 125.78952 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.96629 * 179.97438 * 26 13 12 43 43 H 1.07995 * 120.03451 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6962 1.2124 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0016 10 6 2.0697 -3.5047 0.1050 11 6 1.4362 -4.7335 0.2372 12 6 2.1869 -5.8881 0.3405 13 6 3.5682 -5.8206 0.3226 14 6 4.3843 -7.0818 0.4413 15 7 4.6602 -7.3550 1.8581 16 6 5.5504 -8.5140 2.0072 17 1 5.2810 -9.2756 1.2753 18 6 6.9989 -8.0771 1.7790 19 6 7.9106 -9.3057 1.7949 20 8 9.2736 -8.8886 1.6938 21 6 5.4095 -9.0803 3.3965 22 6 5.3881 -10.3870 3.7150 23 6 5.2404 -10.4641 5.1190 24 6 5.1809 -9.1999 5.5745 25 8 5.2899 -8.3659 4.5276 26 6 4.2020 -4.5978 0.1964 27 6 3.4569 -3.4401 0.0884 28 1 -0.4850 0.8400 0.0004 29 1 0.3578 -4.7865 0.2556 30 1 1.6949 -6.8444 0.4395 31 1 3.8289 -7.9157 0.0120 32 1 5.3253 -6.9576 -0.0947 33 1 5.0455 -6.5420 2.3148 34 1 7.0798 -7.5771 0.8139 35 1 7.3003 -7.3907 2.5703 36 1 7.7663 -9.8532 2.7263 37 1 7.6648 -9.9515 0.9519 38 1 9.9093 -9.6174 1.6982 39 1 5.4684 -11.2179 3.0297 40 1 5.1858 -11.3652 5.7119 41 1 5.0695 -8.9054 6.6077 42 1 5.2808 -4.5482 0.1832 43 1 3.9525 -2.4855 -0.0097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274397052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:31 Heat of formation + Delta-G solvation = -62.042506 kcal Electronic energy + Delta-G solvation = -25271.849985 eV Core-core repulsion = 21476.406805 eV Total energy + Delta-G solvation = -3795.443180 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.42110 -40.80393 -39.12098 -38.20709 -37.00592 -34.40279 -33.92215 -33.14368 -31.77654 -30.51068 -30.00933 -27.57198 -26.26914 -24.47228 -23.62312 -23.12665 -22.51958 -21.90739 -21.01634 -19.84377 -18.91904 -18.41163 -18.39160 -16.96256 -16.68960 -16.49439 -16.32501 -16.21105 -15.96733 -15.49050 -15.44327 -15.18590 -14.87553 -14.58611 -14.35922 -13.99685 -13.91139 -13.63292 -13.60884 -13.51922 -13.17753 -12.98537 -12.82674 -12.50313 -12.33320 -12.28792 -12.16699 -12.12038 -11.93013 -11.17722 -10.96550 -10.79269 -10.68644 -9.77327 -9.54478 -9.23891 -8.90741 -8.47284 -6.15581 0.61383 0.66018 0.91237 1.34328 1.45097 1.50707 1.78453 2.17667 2.22971 2.76109 3.04062 3.23255 3.46816 3.53490 3.70039 4.01438 4.02267 4.05210 4.19564 4.23022 4.24461 4.26675 4.37669 4.45620 4.50793 4.61003 4.62589 4.76591 4.81774 4.90424 5.00746 5.03555 5.09476 5.11061 5.15449 5.30505 5.31850 5.57273 5.67354 5.72024 5.80748 5.98023 6.02869 6.24460 6.28604 6.35970 6.88279 6.97296 7.78638 8.75883 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.002438 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.317256 B =11483.766413 C =11905.553506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.415 4.415 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.115 3.885 11 C -0.207 4.207 12 C -0.046 4.046 13 C -0.161 4.161 14 C 0.120 3.880 15 N -0.684 5.684 16 C 0.177 3.823 17 H 0.128 0.872 18 C -0.147 4.147 19 C 0.079 3.921 20 O -0.598 6.598 21 C -0.006 4.006 22 C -0.218 4.218 23 C -0.224 4.224 24 C -0.057 4.057 25 O -0.191 6.191 26 C -0.061 4.061 27 C -0.244 4.244 28 H 0.273 0.727 29 H 0.111 0.889 30 H 0.145 0.855 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.344 0.656 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.398 0.602 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.224 0.776 42 H 0.137 0.863 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.786 -23.211 5.915 29.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.064 3.936 11 C -0.227 4.227 12 C -0.064 4.064 13 C -0.162 4.162 14 C -0.007 4.007 15 N -0.314 5.314 16 C 0.067 3.933 17 H 0.146 0.854 18 C -0.187 4.187 19 C 0.001 3.999 20 O -0.407 6.407 21 C -0.057 4.057 22 C -0.237 4.237 23 C -0.243 4.243 24 C -0.124 4.124 25 O -0.087 6.087 26 C -0.080 4.080 27 C -0.263 4.263 28 H 0.082 0.918 29 H 0.129 0.871 30 H 0.163 0.837 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.248 0.752 39 H 0.183 0.817 40 H 0.184 0.816 41 H 0.240 0.760 42 H 0.155 0.845 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.505 -22.503 5.965 27.971 hybrid contribution 0.864 0.817 -0.019 1.189 sum 16.370 -21.686 5.946 27.814 Atomic orbital electron populations 1.70178 1.08039 1.28871 1.48867 1.26596 0.96851 1.02750 0.95856 0.84656 0.77406 0.74289 0.79921 1.18078 1.19567 1.18255 1.21781 0.92491 0.81493 1.53300 0.88169 1.83940 1.36001 1.12608 1.81424 1.19957 0.91665 0.87929 0.94030 1.20477 0.99928 0.90733 1.11530 1.20867 0.93494 0.96704 0.95353 1.19602 0.93624 0.94693 1.08252 1.20738 0.97772 0.94291 0.87903 1.60688 1.47974 1.08334 1.14438 1.20047 0.89932 0.94555 0.88799 0.85411 1.22255 0.94347 0.98981 1.03086 1.22174 0.81191 0.95619 1.00921 1.86437 1.17282 1.39567 1.97378 1.22600 1.05161 0.90596 0.87326 1.21826 1.09153 0.96092 0.96643 1.22128 1.08269 0.98624 0.95233 1.24678 1.05986 0.88977 0.92802 1.84037 1.70507 1.38699 1.15450 1.20958 0.99637 0.91068 0.96324 1.21226 0.93050 1.00041 1.12010 0.91824 0.87117 0.83719 0.88764 0.92776 0.83771 0.90027 0.92529 0.93075 0.91400 0.75246 0.81695 0.81623 0.75998 0.84485 0.86507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.39 13.67 21.62 0.30 -57.10 16 2 C -0.02 -1.33 5.49 84.84 0.47 -0.87 16 3 Si 1.02 43.43 29.55 68.60 2.03 45.46 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.41 -24.55 9.49 67.92 0.64 -23.91 16 8 H 0.10 5.44 5.21 -2.91 -0.02 5.42 16 9 O -0.23 -14.31 9.76 -22.70 -0.22 -14.53 16 10 C 0.11 5.81 6.65 22.58 0.15 5.96 16 11 C -0.21 -9.02 9.99 22.39 0.22 -8.79 16 12 C -0.05 -1.55 9.69 22.25 0.22 -1.33 16 13 C -0.16 -4.86 5.35 -19.83 -0.11 -4.97 16 14 C 0.12 2.54 5.63 85.56 0.48 3.02 16 15 N -0.68 -14.86 6.24 -499.46 -3.12 -17.97 16 16 C 0.18 2.99 2.50 44.17 0.11 3.10 16 17 H 0.13 1.62 7.91 -2.38 -0.02 1.60 16 18 C -0.15 -2.46 5.05 30.59 0.15 -2.30 16 19 C 0.08 1.07 6.94 71.98 0.50 1.57 16 20 O -0.60 -9.51 13.66 -148.98 -2.04 -11.54 16 21 C -0.01 -0.12 5.39 24.83 0.13 0.01 16 22 C -0.22 -3.62 10.00 22.19 0.22 -3.40 16 23 C -0.22 -3.60 10.91 22.19 0.24 -3.36 16 24 C -0.06 -1.02 12.09 66.97 0.81 -0.21 16 25 O -0.19 -4.45 10.65 -2.50 -0.03 -4.48 16 26 C -0.06 -2.08 9.69 22.25 0.22 -1.86 16 27 C -0.24 -10.72 9.17 22.39 0.21 -10.51 16 28 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 29 H 0.11 4.81 8.06 -2.92 -0.02 4.78 16 30 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 31 H 0.09 1.71 8.08 -2.38 -0.02 1.69 16 32 H 0.05 0.98 6.93 -2.39 -0.02 0.96 16 33 H 0.34 8.31 8.47 -89.69 -0.76 7.55 16 34 H 0.08 1.34 7.01 -2.39 -0.02 1.33 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 0.69 6.63 -2.39 -0.02 0.67 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.40 2.51 9.12 -74.05 -0.68 1.84 16 39 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.22 2.41 8.06 -2.91 -0.02 2.38 16 42 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 Total: -1.00 -77.47 366.80 1.21 -76.26 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.38 Total: 31.74 kcal Atomic # 6 Polarization: -52.51 SS G_CDS: 4.67 Total: -47.84 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -2.82 Total: -75.07 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -2.28 Total: -30.55 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -77.47 1.21 -76.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274397052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.220 kcal (2) G-P(sol) polarization free energy of solvation -77.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds