Wall clock time and date at job start Tue Mar 31 2020 11:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86802 * 120.00078 * 2 1 4 4 H 1.48507 * 109.46814 * 240.00038 * 3 2 1 5 5 H 1.48500 * 109.47169 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47317 * 119.99873 * 3 2 1 7 7 C 1.38652 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00655 * 179.97438 * 7 2 1 9 9 O 1.34834 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00340 * 185.05311 * 9 7 2 11 11 C 1.38882 * 120.07145 * 174.73672 * 10 9 7 12 12 C 1.38099 * 119.93206 * 180.25590 * 11 10 9 13 13 C 1.38295 * 120.06865 * 359.47410 * 12 11 10 14 14 C 1.50701 * 119.93297 * 180.25412 * 13 12 11 15 15 N 1.46905 * 109.46928 * 89.99748 * 14 13 12 16 16 C 1.46902 * 110.99757 * 180.02562 * 15 14 13 17 17 H 1.09008 * 109.47242 * 325.00263 * 16 15 14 18 18 C 1.52997 * 109.47176 * 205.00151 * 16 15 14 19 19 C 1.52999 * 109.47336 * 64.99889 * 18 16 15 20 20 O 1.42901 * 109.47517 * 180.02562 * 19 18 16 21 21 C 1.50698 * 109.47073 * 85.00139 * 16 15 14 22 22 C 1.34517 * 125.78819 * 219.71696 * 21 16 15 23 23 C 1.41385 * 106.83897 * 179.88977 * 22 21 16 24 24 C 1.34517 * 106.84147 * 0.36921 * 23 22 21 25 25 O 1.34300 * 108.41781 * 359.77282 * 24 23 22 26 26 C 1.38308 * 120.13808 * 0.27516 * 13 12 11 27 27 C 1.38100 * 120.06790 * 359.97438 * 26 13 12 28 28 H 0.97006 * 120.00187 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03090 * 0.02562 * 11 10 9 30 30 H 1.08000 * 119.96243 * 179.74600 * 12 11 10 31 31 H 1.08996 * 109.46994 * 209.99646 * 14 13 12 32 32 H 1.09003 * 109.46785 * 330.00247 * 14 13 12 33 33 H 1.00895 * 110.99682 * 56.04935 * 15 14 13 34 34 H 1.08999 * 109.46955 * 185.00021 * 18 16 15 35 35 H 1.09002 * 109.46845 * 305.00257 * 18 16 15 36 36 H 1.09000 * 109.47168 * 300.00532 * 19 18 16 37 37 H 1.09003 * 109.46670 * 59.99612 * 19 18 16 38 38 H 0.96692 * 113.99779 * 180.02562 * 20 19 18 39 39 H 1.07997 * 126.58267 * 0.02705 * 22 21 16 40 40 H 1.07997 * 126.57981 * 180.16663 * 23 22 21 41 41 H 1.07997 * 125.78872 * 179.74872 * 24 23 22 42 42 H 1.07997 * 119.96346 * 180.02562 * 26 13 12 43 43 H 1.07996 * 120.03027 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6963 -1.2126 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1076 11 6 1.4364 -4.7350 0.2242 12 6 2.1872 -5.8885 0.3383 13 6 3.5684 -5.8203 0.3256 14 6 4.3847 -7.0816 0.4445 15 7 4.6437 -7.6253 -0.8954 16 6 5.4384 -8.8584 -0.8185 17 1 6.1464 -8.7835 0.0070 18 6 6.2024 -9.0554 -2.1293 19 6 7.2215 -7.9271 -2.3002 20 8 7.9347 -8.1107 -3.5249 21 6 4.5224 -10.0329 -0.5896 22 6 4.7703 -11.0777 0.2206 23 6 3.6508 -11.9370 0.1350 24 6 2.7893 -11.3700 -0.7286 25 8 3.3225 -10.2169 -1.1643 26 6 4.2022 -4.5970 0.2043 27 6 3.4571 -3.4395 0.0951 28 1 -0.4851 0.8401 -0.0004 29 1 0.3578 -4.7893 0.2294 30 1 1.6951 -6.8452 0.4331 31 1 5.3318 -6.8564 0.9346 32 1 3.8355 -7.8154 1.0344 33 1 5.0949 -6.9400 -1.4827 34 1 6.7215 -10.0136 -2.1068 35 1 5.5015 -9.0413 -2.9640 36 1 6.7024 -6.9689 -2.3226 37 1 7.9224 -7.9411 -1.4655 38 1 8.5995 -7.4303 -3.6986 39 1 5.6538 -11.2298 0.8227 40 1 3.5149 -12.8712 0.6596 41 1 1.8316 -11.7737 -1.0221 42 1 5.2810 -4.5471 0.1943 43 1 3.9526 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274397055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:34 Heat of formation + Delta-G solvation = -59.712777 kcal Electronic energy + Delta-G solvation = -25413.754009 eV Core-core repulsion = 21618.411854 eV Total energy + Delta-G solvation = -3795.342155 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.37716 -40.80170 -39.14614 -38.22714 -36.92161 -34.39487 -33.84204 -33.20739 -31.77771 -30.45407 -30.19251 -27.52665 -26.23346 -24.93266 -23.60671 -22.74008 -22.42846 -21.94725 -20.95157 -19.84266 -18.89882 -18.61103 -18.00531 -16.92955 -16.80195 -16.57208 -16.42001 -16.22400 -15.92711 -15.59962 -15.49717 -15.21322 -15.00644 -14.45727 -14.37486 -14.05312 -13.84520 -13.60653 -13.55400 -13.41629 -13.17239 -12.99524 -12.81749 -12.44829 -12.37257 -12.28282 -12.20084 -12.12426 -11.86410 -11.17137 -10.88666 -10.78659 -10.73862 -9.77410 -9.47585 -9.32204 -8.90714 -8.46469 -6.14991 0.61280 0.66756 0.90962 1.35233 1.46148 1.51874 1.77516 2.18355 2.24955 2.76285 3.05639 3.23892 3.40000 3.52917 3.71835 3.99047 4.03783 4.08078 4.19459 4.21850 4.26010 4.29886 4.37263 4.41736 4.48254 4.53628 4.62262 4.71331 4.80902 4.96303 4.99009 5.06753 5.09333 5.13657 5.15614 5.28832 5.31619 5.57084 5.66275 5.71817 5.80909 5.96161 6.03299 6.23914 6.39705 6.41221 6.88098 6.98007 7.79554 8.76816 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.002666 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.427022 B =10500.945174 C =11756.852394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.234 6.234 10 C 0.115 3.885 11 C -0.208 4.208 12 C -0.048 4.048 13 C -0.158 4.158 14 C 0.125 3.875 15 N -0.690 5.690 16 C 0.175 3.825 17 H 0.099 0.901 18 C -0.116 4.116 19 C 0.074 3.926 20 O -0.594 6.594 21 C -0.009 4.009 22 C -0.223 4.223 23 C -0.226 4.226 24 C -0.057 4.057 25 O -0.181 6.181 26 C -0.058 4.058 27 C -0.242 4.242 28 H 0.272 0.728 29 H 0.107 0.893 30 H 0.133 0.867 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.352 0.648 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.399 0.601 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.224 0.776 42 H 0.146 0.854 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.617 -20.375 -0.282 26.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.141 6.141 10 C 0.065 3.935 11 C -0.228 4.228 12 C -0.067 4.067 13 C -0.159 4.159 14 C -0.003 4.003 15 N -0.325 5.325 16 C 0.065 3.935 17 H 0.116 0.884 18 C -0.154 4.154 19 C -0.004 4.004 20 O -0.403 6.403 21 C -0.060 4.060 22 C -0.243 4.243 23 C -0.245 4.245 24 C -0.124 4.124 25 O -0.076 6.076 26 C -0.076 4.076 27 C -0.261 4.261 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.151 0.849 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.174 0.826 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.250 0.750 39 H 0.180 0.820 40 H 0.183 0.817 41 H 0.240 0.760 42 H 0.164 0.836 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.107 -20.836 -0.592 25.743 hybrid contribution 0.707 1.538 0.311 1.721 sum 15.814 -19.298 -0.281 24.951 Atomic orbital electron populations 1.70186 1.08126 1.28867 1.48912 1.26620 0.96837 1.02835 0.95854 0.84642 0.77381 0.74162 0.79992 1.18044 1.19772 1.18037 1.21810 0.92576 0.81399 1.53234 0.87909 1.83946 1.36087 1.12657 1.81383 1.19929 0.91817 0.87745 0.94010 1.20426 0.99760 0.90809 1.11773 1.20775 0.93827 0.96195 0.95880 1.19563 0.93381 0.94591 1.08388 1.20643 0.97832 0.92115 0.89696 1.60382 1.51695 1.07062 1.13403 1.19929 0.89583 0.85475 0.98464 0.88375 1.21605 0.97284 1.00117 0.96384 1.22209 0.93949 0.97362 0.86860 1.86413 1.56569 1.55853 1.41426 1.22652 0.86228 0.98871 0.98245 1.21877 1.02157 0.95805 1.04411 1.22112 0.95249 1.03344 1.03776 1.24716 1.01496 0.86056 1.00158 1.84105 1.29565 1.37271 1.56663 1.20970 0.99928 0.90647 0.96049 1.21248 0.92855 1.00217 1.11788 0.91860 0.87441 0.84901 0.92204 0.91002 0.82596 0.89889 0.91973 0.92986 0.91401 0.75044 0.81958 0.81741 0.75974 0.83623 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.18 13.67 21.61 0.30 -56.89 16 2 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 3 Si 1.02 42.66 29.55 68.60 2.03 44.69 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.41 -24.17 9.49 67.92 0.64 -23.53 16 8 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 9 O -0.23 -14.27 9.76 -22.74 -0.22 -14.49 16 10 C 0.12 5.80 6.65 22.58 0.15 5.95 16 11 C -0.21 -9.20 9.99 22.39 0.22 -8.97 16 12 C -0.05 -1.70 9.69 22.25 0.22 -1.49 16 13 C -0.16 -4.81 5.40 -19.83 -0.11 -4.92 16 14 C 0.12 2.77 5.60 85.56 0.48 3.25 16 15 N -0.69 -14.61 6.28 -499.44 -3.14 -17.74 16 16 C 0.18 3.02 2.50 44.17 0.11 3.13 16 17 H 0.10 1.25 7.79 -2.38 -0.02 1.23 16 18 C -0.12 -1.94 5.16 30.59 0.16 -1.79 16 19 C 0.07 1.00 6.88 71.98 0.50 1.49 16 20 O -0.59 -9.35 13.66 -148.98 -2.04 -11.38 16 21 C -0.01 -0.18 5.92 24.83 0.15 -0.04 16 22 C -0.22 -4.10 10.80 22.19 0.24 -3.86 16 23 C -0.23 -3.97 10.91 22.19 0.24 -3.73 16 24 C -0.06 -1.08 12.09 66.97 0.81 -0.27 16 25 O -0.18 -4.48 10.64 -2.44 -0.03 -4.51 16 26 C -0.06 -1.85 9.69 22.25 0.22 -1.64 16 27 C -0.24 -10.28 9.17 22.39 0.21 -10.08 16 28 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 29 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 30 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 31 H 0.06 1.04 8.00 -2.39 -0.02 1.02 16 32 H 0.07 1.66 7.94 -2.39 -0.02 1.64 16 33 H 0.35 7.03 6.46 -89.70 -0.58 6.45 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 0.68 6.43 -2.39 -0.02 0.67 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.40 2.70 9.12 -74.06 -0.68 2.02 16 39 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.22 2.66 8.06 -2.91 -0.02 2.63 16 42 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.12 5.17 5.64 -2.91 -0.02 5.15 16 Total: -1.00 -77.32 367.97 1.39 -75.93 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: -0.21 Total: 31.78 kcal Atomic # 6 Polarization: -52.09 SS G_CDS: 4.69 Total: -47.39 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -2.84 Total: -74.63 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -2.28 Total: -30.38 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -77.32 1.39 -75.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274397055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.219 kcal (2) G-P(sol) polarization free energy of solvation -77.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds