Wall clock time and date at job start Tue Mar 31 2020 11:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48496 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47644 * 300.00065 * 3 2 1 6 6 H 1.48507 * 109.46927 * 60.00385 * 3 2 1 7 7 C 1.39020 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00232 * 170.67412 * 7 2 1 9 9 N 1.36908 * 119.99618 * 350.67315 * 7 2 1 10 10 C 1.34773 * 119.99870 * 163.80688 * 9 7 2 11 11 O 1.21622 * 120.00313 * 3.98194 * 10 9 7 12 12 C 1.47495 * 120.00098 * 183.98789 * 10 9 7 13 13 C 1.39794 * 120.09182 * 21.49196 * 12 10 9 14 14 C 1.37686 * 119.90359 * 179.79128 * 13 12 10 15 15 C 1.39011 * 120.09509 * 0.46701 * 14 13 12 16 16 O 1.35718 * 119.90709 * 179.76487 * 15 14 13 17 17 C 1.42904 * 116.99821 * 174.52338 * 16 15 14 18 18 H 1.09004 * 110.45689 * 325.60477 * 17 16 15 19 19 C 1.54513 * 110.50960 * 203.00651 * 17 16 15 20 20 C 1.54477 * 104.05795 * 241.35499 * 19 17 16 21 21 O 1.44426 * 104.80825 * 23.97612 * 20 19 17 22 22 C 1.44420 * 105.27260 * 319.49069 * 21 20 19 23 23 C 1.39011 * 120.18557 * 359.78790 * 15 14 13 24 24 C 1.37682 * 120.09489 * 359.97438 * 23 15 14 25 25 C 1.46503 * 120.00045 * 343.80823 * 9 7 2 26 26 C 1.53004 * 117.49561 * 231.32725 * 25 9 7 27 27 C 1.53002 * 117.49641 * 299.95010 * 25 9 7 28 28 H 0.97008 * 120.00283 * 5.03056 * 1 2 3 29 29 H 1.07996 * 120.05082 * 0.02562 * 13 12 10 30 30 H 1.08005 * 119.95851 * 180.23025 * 14 13 12 31 31 H 1.09004 * 110.50989 * 359.97438 * 19 17 16 32 32 H 1.08998 * 110.51038 * 122.70621 * 19 17 16 33 33 H 1.08999 * 110.37180 * 142.81026 * 20 19 17 34 34 H 1.09005 * 110.37127 * 265.03400 * 20 19 17 35 35 H 1.09003 * 110.37179 * 281.67488 * 22 21 20 36 36 H 1.09001 * 110.37475 * 159.34237 * 22 21 20 37 37 H 1.07999 * 119.95106 * 179.97438 * 23 15 14 38 38 H 1.08005 * 120.04886 * 180.02562 * 24 23 15 39 39 H 1.08995 * 115.56175 * 85.63875 * 25 9 7 40 40 H 1.08999 * 117.49993 * 0.02562 * 26 25 9 41 41 H 1.08995 * 117.49494 * 214.97439 * 26 25 9 42 42 H 1.08997 * 117.49889 * 145.02519 * 27 25 9 43 43 H 1.08999 * 117.51797 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.7077 1.3465 0.0006 5 1 1.8891 2.3965 -1.2124 6 1 1.8890 2.3964 1.2126 7 6 2.0090 -1.2039 -0.0005 8 1 3.0782 -1.2100 -0.1521 9 7 1.3380 -2.3818 0.1911 10 6 1.9264 -3.5519 -0.1269 11 8 3.0787 -3.5673 -0.5156 12 6 1.1728 -4.8138 -0.0035 13 6 -0.2251 -4.7981 -0.0021 14 6 -0.9246 -5.9788 0.1090 15 6 -0.2429 -7.1843 0.2293 16 8 -0.9363 -8.3454 0.3433 17 6 -0.1780 -9.5567 0.3421 18 1 0.6887 -9.4630 -0.3123 19 6 -1.0603 -10.7473 -0.0953 20 6 -1.0502 -11.6910 1.1277 21 8 -0.7526 -10.8349 2.2521 22 6 0.2608 -9.9220 1.7775 23 6 1.1471 -7.2038 0.2336 24 6 1.8544 -6.0282 0.1181 25 6 -0.0196 -2.3703 0.7418 26 6 -0.3033 -3.2779 1.9405 27 6 -0.2126 -1.7626 2.1326 28 1 -0.4851 0.8368 -0.0737 29 1 -0.7555 -3.8617 -0.0917 30 1 -2.0046 -5.9681 0.1064 31 1 -2.0750 -10.4121 -0.3102 32 1 -0.6286 -11.2436 -0.9644 33 1 -2.0268 -12.1583 1.2545 34 1 -0.2782 -12.4521 1.0133 35 1 1.2351 -10.4104 1.7637 36 1 0.2914 -9.0301 2.4034 37 1 1.6729 -8.1425 0.3277 38 1 2.9343 -6.0443 0.1212 39 1 -0.8204 -2.2303 0.0158 40 1 0.5201 -3.8831 2.3196 41 1 -1.2909 -3.7348 2.0030 42 1 -1.1405 -1.2228 2.3216 43 1 0.6703 -1.3716 2.6383 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278965832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:56 Heat of formation + Delta-G solvation = -25.899667 kcal Electronic energy + Delta-G solvation = -26723.560928 eV Core-core repulsion = 22929.685020 eV Total energy + Delta-G solvation = -3793.875908 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.61518 -39.61633 -38.37865 -36.44322 -36.14330 -33.13579 -31.94579 -31.25834 -30.66357 -29.59078 -28.93610 -25.29178 -23.75322 -23.04011 -22.57177 -21.70530 -21.51721 -20.55957 -19.20833 -18.27245 -17.17489 -16.92585 -16.56784 -16.11343 -15.65218 -15.18463 -14.98234 -14.67401 -14.58179 -14.12857 -13.99912 -13.41986 -13.34855 -13.12743 -13.00093 -12.76908 -12.40953 -12.29905 -11.92109 -11.86450 -11.76677 -11.30928 -11.18665 -11.10482 -10.83393 -10.70015 -10.45571 -10.42665 -10.32787 -10.04376 -9.93558 -9.36414 -8.86916 -8.51899 -8.41200 -7.86727 -7.76772 -6.36097 -3.87077 1.49687 1.73542 3.09494 3.12615 3.22493 3.29148 3.59621 3.71091 4.05563 4.14610 4.42610 4.48339 4.61122 4.69505 4.71485 4.75015 4.97360 5.02708 5.13281 5.15780 5.21029 5.29743 5.38412 5.48216 5.51828 5.59887 5.74450 5.77266 5.78849 5.92454 6.09856 6.18308 6.31855 6.37078 6.40022 6.56782 6.66268 6.76842 6.93933 6.95730 7.04317 7.12739 7.51518 7.56679 8.03744 8.43394 9.12785 9.35303 9.93491 10.65510 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032519 B = 0.002985 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.819462 B = 9378.690043 C = 9752.886151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.035 3.965 3 Si 0.926 3.074 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.105 0.895 9 N -0.410 5.410 10 C 0.483 3.517 11 O -0.593 6.593 12 C -0.134 4.134 13 C -0.056 4.056 14 C -0.164 4.164 15 C 0.125 3.875 16 O -0.302 6.302 17 C 0.051 3.949 18 H 0.091 0.909 19 C -0.152 4.152 20 C 0.044 3.956 21 O -0.368 6.368 22 C 0.024 3.976 23 C -0.225 4.225 24 C -0.037 4.037 25 C 0.135 3.865 26 C -0.220 4.220 27 C -0.142 4.142 28 H 0.269 0.731 29 H 0.157 0.843 30 H 0.127 0.873 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 -17.223 1.927 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.169 4.169 3 Si 0.753 3.247 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.123 0.877 9 N -0.127 5.127 10 C 0.273 3.727 11 O -0.479 6.479 12 C -0.137 4.137 13 C -0.074 4.074 14 C -0.182 4.182 15 C 0.080 3.920 16 O -0.216 6.216 17 C -0.006 4.006 18 H 0.109 0.891 19 C -0.190 4.190 20 C -0.033 4.033 21 O -0.286 6.286 22 C -0.054 4.054 23 C -0.244 4.244 24 C -0.057 4.057 25 C 0.030 3.970 26 C -0.258 4.258 27 C -0.180 4.180 28 H 0.079 0.921 29 H 0.174 0.826 30 H 0.145 0.855 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.135 0.865 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.141 -17.055 2.039 17.929 hybrid contribution 0.570 0.855 -0.201 1.047 sum -4.572 -16.200 1.839 16.932 Atomic orbital electron populations 1.69875 1.05839 1.27637 1.47467 1.25280 0.95588 0.99550 0.96479 0.85844 0.79895 0.81137 0.77803 1.19227 1.20666 1.20614 1.19788 0.93918 0.82035 1.47332 0.87739 1.43114 1.12307 1.05195 1.52047 1.17738 0.87311 0.83077 0.84539 1.90600 1.17835 1.86613 1.52860 1.20143 0.93582 0.94675 1.05311 1.22177 0.93815 0.98528 0.92881 1.20317 1.00022 0.89524 1.08379 1.19163 0.90459 0.85684 0.96727 1.86109 1.35562 1.12052 1.87890 1.23800 0.95314 0.84140 0.97370 0.89082 1.23074 1.02395 0.94300 0.99186 1.23446 1.01800 0.93027 0.84989 1.89183 1.58073 1.47336 1.34047 1.24029 0.91784 0.94696 0.94844 1.21007 0.92656 0.98976 1.11774 1.20965 1.00151 0.90499 0.94048 1.21197 0.86465 1.00262 0.89095 1.23783 1.02053 0.94538 1.05417 1.22944 1.02052 0.92667 1.00298 0.92082 0.82601 0.85477 0.88835 0.89130 0.88636 0.91974 0.90968 0.87924 0.85991 0.85290 0.86491 0.89619 0.88954 0.89526 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.72 9.90 55.50 0.55 -21.17 16 2 C 0.04 0.90 5.06 -17.46 -0.09 0.81 16 3 Si 0.93 20.27 29.57 -169.99 -5.03 15.25 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.27 9.30 -15.00 -0.14 -8.41 16 8 H 0.10 3.02 7.27 -52.49 -0.38 2.64 16 9 N -0.41 -10.38 2.93 -108.91 -0.32 -10.70 16 10 C 0.48 12.11 7.33 -12.49 -0.09 12.02 16 11 O -0.59 -16.77 16.17 5.26 0.09 -16.68 16 12 C -0.13 -2.72 4.78 -104.96 -0.50 -3.22 16 13 C -0.06 -0.99 6.28 -39.20 -0.25 -1.23 16 14 C -0.16 -2.54 9.97 -39.50 -0.39 -2.94 16 15 C 0.12 1.86 6.66 -39.01 -0.26 1.60 16 16 O -0.30 -4.06 9.77 -18.86 -0.18 -4.25 16 17 C 0.05 0.52 2.94 -25.16 -0.07 0.44 16 18 H 0.09 0.83 6.32 -51.93 -0.33 0.50 16 19 C -0.15 -1.19 6.90 -25.16 -0.17 -1.37 16 20 C 0.04 0.34 7.63 37.93 0.29 0.63 16 21 O -0.37 -4.18 11.65 -35.23 -0.41 -4.59 16 22 C 0.02 0.24 6.87 37.93 0.26 0.50 16 23 C -0.23 -3.32 8.82 -39.50 -0.35 -3.67 16 24 C -0.04 -0.67 9.58 -39.20 -0.38 -1.04 16 25 C 0.13 2.92 1.96 -67.93 -0.13 2.78 16 26 C -0.22 -4.01 6.82 -26.72 -0.18 -4.19 16 27 C -0.14 -2.87 8.77 -26.73 -0.23 -3.10 16 28 H 0.27 6.38 8.32 -40.82 -0.34 6.04 16 29 H 0.16 2.81 3.89 -52.49 -0.20 2.61 16 30 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 31 H 0.09 0.79 8.00 -51.93 -0.42 0.37 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 1.15 8.09 -51.93 -0.42 0.73 16 37 H 0.12 1.43 5.81 -52.49 -0.30 1.12 16 38 H 0.13 2.31 7.80 -52.48 -0.41 1.90 16 39 H 0.12 2.58 6.74 -51.93 -0.35 2.23 16 40 H 0.09 1.65 7.44 -51.93 -0.39 1.26 16 41 H 0.09 1.45 7.83 -51.93 -0.41 1.04 16 42 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -30.94 345.40 -8.49 -39.43 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.70 Total: 7.89 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -2.69 Total: -10.38 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.23 Total: -31.87 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.51 Total: -25.52 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.94 -8.49 -39.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278965832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.532 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds