Wall clock time and date at job start Tue Mar 31 2020 11:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31378 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48496 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47644 * 300.00065 * 3 2 1 6 6 H 1.48507 * 109.46927 * 60.00385 * 3 2 1 7 7 C 1.39020 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00232 * 170.67412 * 7 2 1 9 9 N 1.36908 * 119.99618 * 350.67315 * 7 2 1 10 10 C 1.34773 * 119.99870 * 163.80688 * 9 7 2 11 11 O 1.21622 * 120.00313 * 3.98194 * 10 9 7 12 12 C 1.47495 * 120.00098 * 183.98789 * 10 9 7 13 13 C 1.39794 * 120.09182 * 21.49196 * 12 10 9 14 14 C 1.37686 * 119.90359 * 179.79128 * 13 12 10 15 15 C 1.39011 * 120.09509 * 0.46701 * 14 13 12 16 16 O 1.35718 * 119.90709 * 179.76487 * 15 14 13 17 17 C 1.42904 * 116.99821 * 174.52338 * 16 15 14 18 18 H 1.09004 * 110.45689 * 325.60477 * 17 16 15 19 19 C 1.54513 * 110.50960 * 203.00651 * 17 16 15 20 20 C 1.54477 * 104.05795 * 241.35499 * 19 17 16 21 21 O 1.44426 * 104.80825 * 23.97612 * 20 19 17 22 22 C 1.44420 * 105.27260 * 319.49069 * 21 20 19 23 23 C 1.39011 * 120.18557 * 359.78790 * 15 14 13 24 24 C 1.37682 * 120.09489 * 359.97438 * 23 15 14 25 25 C 1.46503 * 120.00045 * 343.80823 * 9 7 2 26 26 C 1.53004 * 117.49561 * 231.32725 * 25 9 7 27 27 C 1.53002 * 117.49641 * 299.95010 * 25 9 7 28 28 H 0.97008 * 120.00283 * 5.03056 * 1 2 3 29 29 H 1.07996 * 120.05082 * 0.02562 * 13 12 10 30 30 H 1.08005 * 119.95851 * 180.23025 * 14 13 12 31 31 H 1.09004 * 110.50989 * 359.97438 * 19 17 16 32 32 H 1.08998 * 110.51038 * 122.70621 * 19 17 16 33 33 H 1.08999 * 110.37180 * 142.81026 * 20 19 17 34 34 H 1.09005 * 110.37127 * 265.03400 * 20 19 17 35 35 H 1.09003 * 110.37179 * 281.67488 * 22 21 20 36 36 H 1.09001 * 110.37475 * 159.34237 * 22 21 20 37 37 H 1.07999 * 119.95106 * 179.97438 * 23 15 14 38 38 H 1.08005 * 120.04886 * 180.02562 * 24 23 15 39 39 H 1.08995 * 115.56175 * 85.63875 * 25 9 7 40 40 H 1.08999 * 117.49993 * 0.02562 * 26 25 9 41 41 H 1.08995 * 117.49494 * 214.97439 * 26 25 9 42 42 H 1.08997 * 117.49889 * 145.02519 * 27 25 9 43 43 H 1.08999 * 117.51797 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.7077 1.3465 0.0006 5 1 1.8891 2.3965 -1.2124 6 1 1.8890 2.3964 1.2126 7 6 2.0090 -1.2039 -0.0005 8 1 3.0782 -1.2100 -0.1521 9 7 1.3380 -2.3818 0.1911 10 6 1.9264 -3.5519 -0.1269 11 8 3.0787 -3.5673 -0.5156 12 6 1.1728 -4.8138 -0.0035 13 6 -0.2251 -4.7981 -0.0021 14 6 -0.9246 -5.9788 0.1090 15 6 -0.2429 -7.1843 0.2293 16 8 -0.9363 -8.3454 0.3433 17 6 -0.1780 -9.5567 0.3421 18 1 0.6887 -9.4630 -0.3123 19 6 -1.0603 -10.7473 -0.0953 20 6 -1.0502 -11.6910 1.1277 21 8 -0.7526 -10.8349 2.2521 22 6 0.2608 -9.9220 1.7775 23 6 1.1471 -7.2038 0.2336 24 6 1.8544 -6.0282 0.1181 25 6 -0.0196 -2.3703 0.7418 26 6 -0.3033 -3.2779 1.9405 27 6 -0.2126 -1.7626 2.1326 28 1 -0.4851 0.8368 -0.0737 29 1 -0.7555 -3.8617 -0.0917 30 1 -2.0046 -5.9681 0.1064 31 1 -2.0750 -10.4121 -0.3102 32 1 -0.6286 -11.2436 -0.9644 33 1 -2.0268 -12.1583 1.2545 34 1 -0.2782 -12.4521 1.0133 35 1 1.2351 -10.4104 1.7637 36 1 0.2914 -9.0301 2.4034 37 1 1.6729 -8.1425 0.3277 38 1 2.9343 -6.0443 0.1212 39 1 -0.8204 -2.2303 0.0158 40 1 0.5201 -3.8831 2.3196 41 1 -1.2909 -3.7348 2.0030 42 1 -1.1405 -1.2228 2.3216 43 1 0.6703 -1.3716 2.6383 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278965832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:55 Heat of formation + Delta-G solvation = -44.971714 kcal Electronic energy + Delta-G solvation = -26724.387954 eV Core-core repulsion = 22929.685020 eV Total energy + Delta-G solvation = -3794.702934 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.76397 -41.00010 -39.49061 -38.02273 -37.67309 -34.99356 -33.14217 -32.76353 -31.94339 -30.88916 -29.73720 -27.15282 -24.94255 -24.15947 -23.86401 -23.12849 -22.89397 -21.69143 -20.84321 -19.44381 -18.90699 -18.15350 -17.45538 -17.27287 -17.06009 -16.61480 -16.39326 -15.94910 -15.71247 -15.60275 -15.46998 -15.05542 -14.83873 -14.46203 -14.15852 -13.91864 -13.71918 -13.59637 -13.09750 -13.04475 -12.94576 -12.74707 -12.53235 -12.45193 -12.27280 -12.14222 -12.06396 -11.86988 -11.72080 -11.52837 -11.01429 -10.74875 -10.67461 -10.27365 -9.88159 -9.74808 -9.11348 -8.29821 -5.91419 0.10423 0.43455 1.36582 1.40616 1.52882 2.06447 2.12726 2.24923 2.83356 2.94308 2.96700 3.10544 3.25041 3.44498 3.75124 3.84579 3.89175 3.90138 4.06874 4.17034 4.18029 4.30312 4.32730 4.36221 4.45885 4.49316 4.60660 4.68316 4.75691 4.82461 4.83153 4.88981 5.03792 5.08462 5.11498 5.25311 5.32715 5.35948 5.40206 5.49288 5.58604 5.68973 5.80311 6.05786 6.44529 6.50605 7.15251 7.43729 8.01705 8.68948 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032519 B = 0.002985 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.819462 B = 9378.690043 C = 9752.886151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.012 3.988 3 Si 0.984 3.016 4 H -0.280 1.280 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.348 4.348 8 H 0.070 0.930 9 N -0.422 5.422 10 C 0.469 3.531 11 O -0.644 6.644 12 C -0.164 4.164 13 C -0.052 4.052 14 C -0.161 4.161 15 C 0.142 3.858 16 O -0.307 6.307 17 C 0.038 3.962 18 H 0.107 0.893 19 C -0.147 4.147 20 C 0.040 3.960 21 O -0.398 6.398 22 C 0.022 3.978 23 C -0.211 4.211 24 C -0.044 4.044 25 C 0.117 3.883 26 C -0.179 4.179 27 C -0.145 4.145 28 H 0.275 0.725 29 H 0.152 0.848 30 H 0.153 0.847 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.157 0.843 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 -19.475 2.238 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.475 4.475 8 H 0.088 0.912 9 N -0.137 5.137 10 C 0.261 3.739 11 O -0.534 6.534 12 C -0.168 4.168 13 C -0.070 4.070 14 C -0.179 4.179 15 C 0.096 3.904 16 O -0.220 6.220 17 C -0.018 4.018 18 H 0.125 0.875 19 C -0.184 4.184 20 C -0.036 4.036 21 O -0.317 6.317 22 C -0.055 4.055 23 C -0.230 4.230 24 C -0.063 4.063 25 C 0.012 3.988 26 C -0.216 4.216 27 C -0.183 4.183 28 H 0.086 0.914 29 H 0.169 0.831 30 H 0.171 0.829 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.174 0.826 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.094 0.906 41 H 0.147 0.853 42 H 0.120 0.880 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.222 -19.324 2.364 20.764 hybrid contribution 1.133 1.348 -0.304 1.787 sum -6.089 -17.976 2.061 19.091 Atomic orbital electron populations 1.69936 1.06197 1.28622 1.46132 1.25884 0.96538 1.01476 0.95337 0.85012 0.78033 0.77646 0.78483 1.20512 1.19609 1.19164 1.19621 0.93029 0.84042 1.50820 0.91197 1.43274 1.13528 1.04743 1.52177 1.18601 0.87138 0.84684 0.83455 1.90529 1.20162 1.87691 1.55039 1.19860 0.94566 0.93041 1.09302 1.22030 0.92514 0.99439 0.93058 1.20510 1.01201 0.88847 1.07360 1.19236 0.90425 0.86363 0.94394 1.86134 1.36266 1.12436 1.87205 1.24196 0.96290 0.83317 0.98000 0.87490 1.23129 1.01779 0.93328 1.00190 1.23680 1.03207 0.92956 0.83792 1.89153 1.58568 1.48121 1.35842 1.24085 0.92750 0.94434 0.94238 1.21215 0.92797 0.98999 1.09969 1.20980 0.99956 0.90891 0.94500 1.21222 0.84565 1.03361 0.89615 1.23730 1.03339 0.93096 1.01481 1.22916 1.01664 0.94574 0.99150 0.91421 0.83050 0.82924 0.89483 0.86483 0.87629 0.89877 0.88589 0.89503 0.82602 0.86278 0.87011 0.90625 0.85285 0.87982 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.80 9.90 21.68 0.21 -43.58 16 2 C 0.01 0.62 5.06 84.95 0.43 1.05 16 3 Si 0.98 42.41 29.57 68.60 2.03 44.44 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.35 -20.09 9.30 84.09 0.78 -19.31 16 8 H 0.07 4.40 7.27 -2.91 -0.02 4.38 16 9 N -0.42 -22.47 2.93 -616.74 -1.81 -24.28 16 10 C 0.47 24.93 7.33 86.68 0.64 25.56 16 11 O -0.64 -39.18 16.17 -4.10 -0.07 -39.25 16 12 C -0.16 -6.82 4.78 -20.08 -0.10 -6.92 16 13 C -0.05 -1.80 6.28 22.52 0.14 -1.66 16 14 C -0.16 -4.55 9.97 22.32 0.22 -4.33 16 15 C 0.14 3.79 6.66 22.64 0.15 3.94 16 16 O -0.31 -7.15 9.77 -90.40 -0.88 -8.03 16 17 C 0.04 0.63 2.94 31.61 0.09 0.72 16 18 H 0.11 1.46 6.32 -2.38 -0.02 1.44 16 19 C -0.15 -1.74 6.90 31.61 0.22 -1.52 16 20 C 0.04 0.47 7.63 72.48 0.55 1.03 16 21 O -0.40 -7.98 11.65 -148.98 -1.74 -9.72 16 22 C 0.02 0.37 6.87 72.48 0.50 0.87 16 23 C -0.21 -5.71 8.82 22.32 0.20 -5.52 16 24 C -0.04 -1.56 9.58 22.51 0.22 -1.35 16 25 C 0.12 5.12 1.96 44.99 0.09 5.21 16 26 C -0.18 -6.34 6.82 30.60 0.21 -6.14 16 27 C -0.15 -5.88 8.77 30.60 0.27 -5.61 16 28 H 0.28 12.91 8.32 -92.70 -0.77 12.14 16 29 H 0.15 5.38 3.89 -2.91 -0.01 5.36 16 30 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.09 1.17 8.00 -2.38 -0.02 1.15 16 32 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 37 H 0.16 3.09 5.81 -2.91 -0.02 3.07 16 38 H 0.12 4.42 7.80 -2.91 -0.02 4.40 16 39 H 0.11 4.98 6.74 -2.39 -0.02 4.97 16 40 H 0.08 2.88 7.44 -2.39 -0.02 2.86 16 41 H 0.13 3.63 7.83 -2.39 -0.02 3.62 16 42 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 43 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -71.67 345.40 3.39 -68.28 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 1.03 Total: 26.10 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 4.61 Total: -13.97 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -1.59 Total: -67.86 kcal Atomic # 8 Polarization: -54.31 SS G_CDS: -2.68 Total: -57.00 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -71.67 3.39 -68.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278965832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.309 kcal (2) G-P(sol) polarization free energy of solvation -71.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds