Wall clock time and date at job start Tue Mar 31 2020 11:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38260 * 120.00122 * 2 1 4 4 C 1.38210 * 120.00403 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99750 * 359.76406 * 4 3 2 6 6 C 1.38218 * 119.99832 * 0.47024 * 5 4 3 7 7 C 1.50698 * 119.99860 * 179.78286 * 6 5 4 8 8 C 1.52999 * 109.47161 * 269.72707 * 7 6 5 9 9 C 1.53007 * 109.46883 * 180.02562 * 8 7 6 10 10 S 1.80999 * 109.46739 * 179.97438 * 9 8 7 11 11 C 1.76199 * 99.99815 * 179.97438 * 10 9 8 12 12 N 1.32388 * 126.26079 * 359.97438 * 11 10 9 13 13 N 1.28511 * 110.20972 * 180.02562 * 12 11 10 14 14 C 1.33102 * 109.74196 * 0.02562 * 13 12 11 15 15 C 1.39784 * 126.56422 * 179.97438 * 14 13 12 16 16 H 1.07990 * 119.99937 * 186.21013 * 15 14 13 17 17 C 1.40079 * 119.99787 * 6.21173 * 15 14 13 18 18 N 1.30818 * 120.00007 * 6.44701 * 17 15 14 19 19 Si 1.86802 * 120.00049 * 186.44417 * 17 15 14 20 20 H 1.48499 * 109.47321 * 265.01629 * 19 17 15 21 21 H 1.48499 * 109.46774 * 25.01756 * 19 17 15 22 22 H 1.48500 * 109.47127 * 145.01048 * 19 17 15 23 23 N 1.36673 * 126.25843 * 180.30346 * 11 10 9 24 24 C 1.46491 * 127.15480 * 359.97438 * 23 11 10 25 25 C 1.38209 * 120.00098 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46910 * 270.02206 * 1 2 3 27 27 H 1.08995 * 109.47605 * 30.01763 * 1 2 3 28 28 H 1.08998 * 109.47420 * 150.02269 * 1 2 3 29 29 H 1.07999 * 119.99660 * 359.97438 * 3 2 1 30 30 H 1.07996 * 120.00565 * 179.97438 * 4 3 2 31 31 H 1.07996 * 119.99925 * 180.25247 * 5 4 3 32 32 H 1.08998 * 109.47037 * 149.72484 * 7 6 5 33 33 H 1.09002 * 109.47166 * 29.72521 * 7 6 5 34 34 H 1.08998 * 109.47328 * 59.99955 * 8 7 6 35 35 H 1.09002 * 109.46928 * 299.99959 * 8 7 6 36 36 H 1.09006 * 109.47120 * 60.00159 * 9 8 7 37 37 H 1.08993 * 109.47402 * 299.99892 * 9 8 7 38 38 H 0.97004 * 120.00095 * 179.97438 * 18 17 15 39 39 H 1.09010 * 109.46877 * 270.13447 * 24 23 11 40 40 H 1.09003 * 109.47456 * 30.12807 * 24 23 11 41 41 H 1.08999 * 109.47490 * 150.13479 * 24 23 11 42 42 H 1.08003 * 120.00204 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 0.0039 6 6 3.5806 -1.1970 -0.0010 7 6 4.3341 -2.5020 -0.0012 8 6 4.5881 -2.9441 -1.4437 9 6 5.3526 -4.2695 -1.4438 10 16 5.6525 -4.7928 -3.1504 11 6 6.5218 -6.2978 -2.8606 12 7 6.8218 -6.8137 -1.6788 13 7 7.4604 -7.9191 -1.8262 14 6 7.6108 -8.1821 -3.1223 15 6 8.2525 -9.2929 -3.6776 16 1 8.4023 -9.3520 -4.7454 17 6 8.7013 -10.3293 -2.8489 18 7 8.4101 -10.3197 -1.5736 19 14 9.7155 -11.7251 -3.5649 20 1 8.8225 -12.8614 -3.9061 21 1 10.4086 -11.2547 -4.7911 22 1 10.7217 -12.1684 -2.5668 23 7 7.0152 -7.1429 -3.8147 24 6 6.9289 -6.9830 -5.2683 25 6 2.1980 -1.1969 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6582 2.1326 -0.0004 30 1 4.1204 2.1327 -0.0010 31 1 5.3517 0.0001 0.0076 32 1 3.7454 -3.2615 0.5133 33 1 5.2869 -2.3715 0.5119 34 1 5.1768 -2.1846 -1.9582 35 1 3.6354 -3.0746 -1.9568 36 1 4.7635 -5.0288 -0.9295 37 1 6.3054 -4.1395 -0.9306 38 1 8.7205 -11.0376 -0.9998 39 1 6.0168 -7.4562 -5.6323 40 1 6.9116 -5.9218 -5.5168 41 1 7.7937 -7.4520 -5.7374 42 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280050589.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:09 Heat of formation + Delta-G solvation = 66.686916 kcal Electronic energy + Delta-G solvation = -22218.780842 eV Core-core repulsion = 18903.965411 eV Total energy + Delta-G solvation = -3314.815431 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.49174 -39.65510 -35.42140 -33.68968 -33.31276 -32.74448 -31.15459 -29.32047 -27.27677 -26.68484 -26.34975 -25.46575 -22.53972 -21.92681 -20.81675 -20.50562 -20.21123 -17.34848 -16.69854 -16.14919 -15.89593 -15.45537 -15.04365 -14.91043 -14.54792 -14.53832 -14.12882 -13.81241 -13.51033 -13.31989 -13.22044 -12.66303 -12.49655 -12.34907 -12.21267 -12.12265 -11.94678 -11.65697 -11.35775 -11.29174 -11.22689 -10.92493 -10.86154 -10.71785 -10.38492 -10.15365 -9.71503 -9.58038 -8.93667 -8.72702 -8.69155 -8.43629 -8.36109 -6.82084 -6.66314 -4.56163 1.18195 1.22958 2.10889 2.87547 2.91568 3.06461 3.10560 3.36983 3.58783 3.87551 4.24846 4.42318 4.53419 4.61039 4.71259 4.95639 4.99340 5.09541 5.21724 5.28952 5.31615 5.32508 5.35714 5.46603 5.54080 5.55971 5.62432 5.70384 5.89466 5.89788 5.93785 6.02790 6.05048 6.09176 6.30500 6.32796 6.40933 6.52823 6.78362 6.86790 6.90020 7.24572 7.49696 7.89948 8.18581 8.70588 8.86570 10.27385 10.64330 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.033695 B = 0.002075 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.788217 B =13487.938270 C =13721.589306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.129 4.129 4 C -0.115 4.115 5 C -0.123 4.123 6 C -0.071 4.071 7 C -0.077 4.077 8 C -0.096 4.096 9 C -0.089 4.089 10 S -0.064 6.064 11 C 0.049 3.951 12 N -0.286 5.286 13 N -0.336 5.336 14 C 0.347 3.653 15 C -0.449 4.449 16 H 0.084 0.916 17 C 0.080 3.920 18 N -0.738 5.738 19 Si 0.920 3.080 20 H -0.270 1.270 21 H -0.262 1.262 22 H -0.274 1.274 23 N -0.516 5.516 24 C 0.102 3.898 25 C -0.117 4.117 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.279 0.721 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.485 17.594 -0.012 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.134 4.134 5 C -0.141 4.141 6 C -0.071 4.071 7 C -0.117 4.117 8 C -0.135 4.135 9 C -0.238 4.238 10 S 0.163 5.837 11 C -0.323 4.323 12 N -0.132 5.132 13 N -0.183 5.183 14 C 0.103 3.897 15 C -0.489 4.489 16 H 0.102 0.898 17 C -0.146 4.146 18 N -0.362 5.362 19 Si 0.744 3.256 20 H -0.195 1.195 21 H -0.186 1.186 22 H -0.199 1.199 23 N -0.218 5.218 24 C -0.043 4.043 25 C -0.135 4.135 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.689 17.870 0.704 20.835 hybrid contribution 0.832 -1.222 -0.692 1.632 sum -9.857 16.648 0.011 19.347 Atomic orbital electron populations 1.20792 0.91324 1.02759 1.02256 1.19913 0.96000 0.93205 0.99568 1.20993 0.94312 0.97372 1.02068 1.21114 0.94280 0.97962 0.99994 1.21086 0.99972 0.91985 1.01021 1.19924 0.93681 0.95122 0.98417 1.20621 1.00366 0.93672 0.96998 1.21313 1.00583 0.95240 0.96372 1.23307 1.04493 0.99709 0.96337 1.84365 1.69923 1.18245 1.11136 1.25320 1.15620 1.01601 0.89747 1.74517 1.12913 1.06587 1.19169 1.75417 1.22777 1.07916 1.12227 1.21622 0.92781 0.88066 0.87266 1.18087 1.35512 1.00335 0.94967 0.89793 1.25789 0.95430 0.98850 0.94513 1.69994 1.32468 1.29236 1.04547 0.86117 0.79607 0.80227 0.79659 1.19488 1.18576 1.19907 1.46059 1.49245 1.20790 1.05696 1.21485 1.02300 1.01472 0.79032 1.20976 0.93635 0.97633 1.01274 0.91257 0.91671 0.91465 0.86423 0.86217 0.86017 0.90467 0.90443 0.91069 0.91076 0.89168 0.89192 0.90965 0.92529 0.91568 0.90412 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 2 C -0.09 -0.80 5.88 -104.63 -0.62 -1.42 16 3 C -0.13 -1.15 9.70 -39.58 -0.38 -1.54 16 4 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 5 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 6 C -0.07 -0.74 5.13 -104.62 -0.54 -1.28 16 7 C -0.08 -0.82 5.35 -27.88 -0.15 -0.96 16 8 C -0.10 -1.14 5.20 -26.73 -0.14 -1.28 16 9 C -0.09 -1.40 5.22 37.16 0.19 -1.20 16 10 S -0.06 -1.18 21.79 -107.50 -2.34 -3.52 16 11 C 0.05 1.20 8.09 -87.28 -0.71 0.49 16 12 N -0.29 -7.95 11.62 30.89 0.36 -7.60 16 13 N -0.34 -10.23 10.56 31.26 0.33 -9.90 16 14 C 0.35 9.84 7.50 -154.80 -1.16 8.68 16 15 C -0.45 -12.01 9.05 -38.31 -0.35 -12.35 16 16 H 0.08 2.03 7.26 -52.49 -0.38 1.65 16 17 C 0.08 2.05 5.49 -17.29 -0.09 1.96 16 18 N -0.74 -20.45 12.00 55.56 0.67 -19.78 16 19 Si 0.92 18.64 29.57 -169.99 -5.03 13.61 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 N -0.52 -12.69 3.26 -123.17 -0.40 -13.10 16 24 C 0.10 1.90 10.89 59.84 0.65 2.55 16 25 C -0.12 -1.18 9.36 -39.58 -0.37 -1.55 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 29 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.51 8.14 -51.91 -0.42 1.09 16 37 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 38 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 39 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 40 H 0.07 1.08 7.85 -51.93 -0.41 0.68 16 41 H 0.08 1.35 7.48 -51.93 -0.39 0.96 16 42 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -33.41 371.04 -11.12 -44.53 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.22 Total: 1.54 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -4.08 Total: -11.37 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.95 Total: -50.38 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -2.34 Total: -3.52 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.41 -11.12 -44.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280050589.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.212 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds