Wall clock time and date at job start Tue Mar 31 2020 11:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38260 * 120.00122 * 2 1 4 4 C 1.38210 * 120.00403 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99750 * 359.76406 * 4 3 2 6 6 C 1.38218 * 119.99832 * 0.47024 * 5 4 3 7 7 C 1.50698 * 119.99860 * 179.78286 * 6 5 4 8 8 C 1.52999 * 109.47161 * 269.72707 * 7 6 5 9 9 C 1.53007 * 109.46883 * 180.02562 * 8 7 6 10 10 S 1.80999 * 109.46739 * 179.97438 * 9 8 7 11 11 C 1.76199 * 99.99815 * 179.97438 * 10 9 8 12 12 N 1.32388 * 126.26079 * 359.97438 * 11 10 9 13 13 N 1.28511 * 110.20972 * 180.02562 * 12 11 10 14 14 C 1.33102 * 109.74196 * 0.02562 * 13 12 11 15 15 C 1.39784 * 126.56422 * 179.97438 * 14 13 12 16 16 H 1.07990 * 119.99937 * 186.21013 * 15 14 13 17 17 C 1.40079 * 119.99787 * 6.21173 * 15 14 13 18 18 N 1.30818 * 120.00007 * 6.44701 * 17 15 14 19 19 Si 1.86802 * 120.00049 * 186.44417 * 17 15 14 20 20 H 1.48499 * 109.47321 * 265.01629 * 19 17 15 21 21 H 1.48499 * 109.46774 * 25.01756 * 19 17 15 22 22 H 1.48500 * 109.47127 * 145.01048 * 19 17 15 23 23 N 1.36673 * 126.25843 * 180.30346 * 11 10 9 24 24 C 1.46491 * 127.15480 * 359.97438 * 23 11 10 25 25 C 1.38209 * 120.00098 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46910 * 270.02206 * 1 2 3 27 27 H 1.08995 * 109.47605 * 30.01763 * 1 2 3 28 28 H 1.08998 * 109.47420 * 150.02269 * 1 2 3 29 29 H 1.07999 * 119.99660 * 359.97438 * 3 2 1 30 30 H 1.07996 * 120.00565 * 179.97438 * 4 3 2 31 31 H 1.07996 * 119.99925 * 180.25247 * 5 4 3 32 32 H 1.08998 * 109.47037 * 149.72484 * 7 6 5 33 33 H 1.09002 * 109.47166 * 29.72521 * 7 6 5 34 34 H 1.08998 * 109.47328 * 59.99955 * 8 7 6 35 35 H 1.09002 * 109.46928 * 299.99959 * 8 7 6 36 36 H 1.09006 * 109.47120 * 60.00159 * 9 8 7 37 37 H 1.08993 * 109.47402 * 299.99892 * 9 8 7 38 38 H 0.97004 * 120.00095 * 179.97438 * 18 17 15 39 39 H 1.09010 * 109.46877 * 270.13447 * 24 23 11 40 40 H 1.09003 * 109.47456 * 30.12807 * 24 23 11 41 41 H 1.08999 * 109.47490 * 150.13479 * 24 23 11 42 42 H 1.08003 * 120.00204 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 0.0039 6 6 3.5806 -1.1970 -0.0010 7 6 4.3341 -2.5020 -0.0012 8 6 4.5881 -2.9441 -1.4437 9 6 5.3526 -4.2695 -1.4438 10 16 5.6525 -4.7928 -3.1504 11 6 6.5218 -6.2978 -2.8606 12 7 6.8218 -6.8137 -1.6788 13 7 7.4604 -7.9191 -1.8262 14 6 7.6108 -8.1821 -3.1223 15 6 8.2525 -9.2929 -3.6776 16 1 8.4023 -9.3520 -4.7454 17 6 8.7013 -10.3293 -2.8489 18 7 8.4101 -10.3197 -1.5736 19 14 9.7155 -11.7251 -3.5649 20 1 8.8225 -12.8614 -3.9061 21 1 10.4086 -11.2547 -4.7911 22 1 10.7217 -12.1684 -2.5668 23 7 7.0152 -7.1429 -3.8147 24 6 6.9289 -6.9830 -5.2683 25 6 2.1980 -1.1969 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6582 2.1326 -0.0004 30 1 4.1204 2.1327 -0.0010 31 1 5.3517 0.0001 0.0076 32 1 3.7454 -3.2615 0.5133 33 1 5.2869 -2.3715 0.5119 34 1 5.1768 -2.1846 -1.9582 35 1 3.6354 -3.0746 -1.9568 36 1 4.7635 -5.0288 -0.9295 37 1 6.3054 -4.1395 -0.9306 38 1 8.7205 -11.0376 -0.9998 39 1 6.0168 -7.4562 -5.6323 40 1 6.9116 -5.9218 -5.5168 41 1 7.7937 -7.4520 -5.7374 42 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280050589.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:09 Heat of formation + Delta-G solvation = 50.270296 kcal Electronic energy + Delta-G solvation = -22219.492720 eV Core-core repulsion = 18903.965411 eV Total energy + Delta-G solvation = -3315.527309 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.45980 -40.35917 -36.35175 -35.62821 -35.15103 -33.45414 -32.02637 -31.30639 -28.36973 -27.93854 -27.54467 -27.15232 -23.53604 -22.84288 -22.72343 -22.08512 -21.18176 -19.26547 -17.88450 -17.37509 -17.18423 -16.81357 -16.51457 -16.24735 -15.81334 -15.70211 -15.40718 -15.06072 -14.62108 -14.27967 -13.99105 -13.91392 -13.82636 -13.50657 -13.46325 -13.10714 -12.99024 -12.95127 -12.85536 -12.74710 -12.44628 -12.00663 -11.99580 -11.77335 -11.70470 -11.62489 -11.55956 -11.40887 -10.58643 -10.39288 -10.27307 -9.65345 -9.43746 -8.57946 -8.52564 -6.58547 0.38110 0.51782 0.57920 1.19026 1.31706 1.41241 1.58105 1.61230 2.18085 2.43378 2.50537 2.87409 3.32615 3.66001 3.84952 4.01849 4.06950 4.08543 4.22178 4.32931 4.33487 4.42984 4.44286 4.53668 4.60653 4.66282 4.69869 4.83973 4.84765 4.88157 4.90002 4.95830 4.98476 5.10014 5.20428 5.29787 5.31268 5.35698 5.55926 5.61910 5.73115 5.78017 6.02774 6.18361 6.21537 6.74861 6.91576 8.39955 8.63016 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.033695 B = 0.002075 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.788217 B =13487.938270 C =13721.589306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.135 4.135 4 C -0.121 4.121 5 C -0.136 4.136 6 C -0.084 4.084 7 C -0.071 4.071 8 C -0.082 4.082 9 C -0.086 4.086 10 S -0.017 6.017 11 C 0.056 3.944 12 N -0.331 5.331 13 N -0.391 5.391 14 C 0.317 3.683 15 C -0.473 4.473 16 H 0.103 0.897 17 C 0.029 3.971 18 N -0.790 5.790 19 Si 1.007 2.993 20 H -0.260 1.260 21 H -0.248 1.248 22 H -0.271 1.271 23 N -0.523 5.523 24 C 0.094 3.906 25 C -0.132 4.132 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.285 0.715 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.042 18.883 -1.767 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.153 4.153 4 C -0.139 4.139 5 C -0.154 4.154 6 C -0.084 4.084 7 C -0.111 4.111 8 C -0.121 4.121 9 C -0.236 4.236 10 S 0.210 5.790 11 C -0.318 4.318 12 N -0.175 5.175 13 N -0.238 5.238 14 C 0.071 3.929 15 C -0.513 4.513 16 H 0.121 0.879 17 C -0.192 4.192 18 N -0.415 5.415 19 Si 0.826 3.174 20 H -0.184 1.184 21 H -0.171 1.171 22 H -0.196 1.196 23 N -0.224 5.224 24 C -0.049 4.049 25 C -0.150 4.150 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.147 0.853 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.258 19.176 -1.070 22.263 hybrid contribution 0.867 -1.401 -0.154 1.655 sum -10.392 17.775 -1.225 20.626 Atomic orbital electron populations 1.20830 0.89795 1.03472 1.02933 1.20235 0.97306 0.93075 0.98986 1.21319 0.94514 0.98155 1.01344 1.21407 0.94664 0.98484 0.99333 1.21282 1.00556 0.92223 1.01335 1.19926 0.93959 0.95000 0.99538 1.20540 1.00594 0.94064 0.95874 1.21244 1.00239 0.92991 0.97660 1.23435 1.04284 1.01270 0.94579 1.84165 1.68037 1.14068 1.12727 1.26458 1.13254 1.02885 0.89189 1.74389 1.15023 1.07039 1.21086 1.75269 1.24795 1.09517 1.14204 1.22060 0.93848 0.89577 0.87448 1.18607 1.35997 1.00528 0.96146 0.87866 1.27004 0.96043 1.01547 0.94561 1.70137 1.34111 1.30734 1.06535 0.84836 0.77557 0.76034 0.78999 1.18408 1.17081 1.19613 1.46407 1.48353 1.19836 1.07818 1.21847 1.03699 1.03534 0.75811 1.21152 0.93697 0.98364 1.01788 0.90531 0.90478 0.91267 0.84415 0.84291 0.85311 0.90501 0.90323 0.90279 0.90425 0.90434 0.90310 0.90485 0.90857 0.89080 0.89254 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.23 0.71 -0.64 16 2 C -0.10 -1.63 5.88 -19.87 -0.12 -1.74 16 3 C -0.14 -2.14 9.70 22.27 0.22 -1.92 16 4 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 5 C -0.14 -2.52 9.70 22.27 0.22 -2.30 16 6 C -0.08 -1.67 5.13 -19.86 -0.10 -1.78 16 7 C -0.07 -1.46 5.35 29.85 0.16 -1.30 16 8 C -0.08 -1.85 5.20 30.60 0.16 -1.69 16 9 C -0.09 -2.68 5.22 71.98 0.38 -2.31 16 10 S -0.02 -0.61 21.79 -56.49 -1.23 -1.84 16 11 C 0.06 2.75 8.09 179.18 1.45 4.20 16 12 N -0.33 -19.11 11.62 -56.17 -0.65 -19.76 16 13 N -0.39 -24.91 10.56 -55.01 -0.58 -25.49 16 14 C 0.32 18.47 7.50 133.23 1.00 19.47 16 15 C -0.47 -25.60 9.05 23.09 0.21 -25.39 16 16 H 0.10 4.94 7.26 -2.92 -0.02 4.92 16 17 C 0.03 1.52 5.49 85.29 0.47 1.98 16 18 N -0.79 -45.33 12.00 21.85 0.26 -45.07 16 19 Si 1.01 38.08 29.57 68.60 2.03 40.11 16 20 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 21 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 22 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 23 N -0.52 -25.78 3.26 -543.61 -1.77 -27.55 16 24 C 0.09 3.33 10.89 127.77 1.39 4.73 16 25 C -0.13 -2.52 9.36 22.27 0.21 -2.31 16 26 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 28 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 29 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 30 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 32 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 33 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.08 2.65 8.14 -2.40 -0.02 2.63 16 38 H 0.28 14.72 8.30 -92.71 -0.77 13.95 16 39 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.09 2.75 7.85 -2.39 -0.02 2.74 16 41 H 0.09 2.95 7.48 -2.39 -0.02 2.94 16 42 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -75.72 371.04 5.63 -70.09 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 1.01 Total: 22.26 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 6.57 Total: -12.75 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -2.74 Total: -117.87 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -1.23 Total: -1.84 kcal Total: -75.72 5.63 -70.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280050589.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.360 kcal (2) G-P(sol) polarization free energy of solvation -75.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds