Wall clock time and date at job start Tue Mar 31 2020 11:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99692 * 2 1 4 4 H 1.48490 * 109.47508 * 270.00474 * 3 2 1 5 5 H 1.48500 * 109.47216 * 30.00827 * 3 2 1 6 6 H 1.48500 * 109.46878 * 150.00190 * 3 2 1 7 7 C 1.38703 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00193 * 359.97438 * 7 2 1 9 9 O 1.34814 * 119.99201 * 179.97438 * 7 2 1 10 10 C 1.35525 * 116.99491 * 174.88079 * 9 7 2 11 11 C 1.38838 * 120.16129 * 5.66149 * 10 9 7 12 12 C 1.38016 * 120.07143 * 180.02562 * 11 10 9 13 13 C 1.38579 * 120.40506 * 0.02562 * 12 11 10 14 14 C 1.37826 * 120.32073 * 359.71356 * 13 12 11 15 15 C 1.39675 * 119.91922 * 0.56005 * 14 13 12 16 16 C 1.47532 * 120.19922 * 179.71905 * 15 14 13 17 17 O 1.21586 * 120.00178 * 208.67346 * 16 15 14 18 18 N 1.34771 * 119.99742 * 28.67101 * 16 15 14 19 19 C 1.45922 * 117.96905 * 151.66754 * 18 16 15 20 20 C 1.53356 * 108.63500 * 205.40691 * 19 18 16 21 21 O 1.42656 * 107.69172 * 304.53145 * 20 19 18 22 22 C 1.41236 * 116.63608 * 65.51617 * 21 20 19 23 23 H 1.09001 * 108.31544 * 83.86519 * 22 21 20 24 24 C 1.54713 * 109.45710 * 202.15965 * 22 21 20 25 25 C 1.55177 * 103.51568 * 99.40761 * 24 22 21 26 26 C 1.55166 * 102.16199 * 39.70958 * 25 24 22 27 27 C 1.44369 * 117.97522 * 331.64489 * 18 16 15 28 28 H 1.08992 * 108.10787 * 60.36082 * 27 18 16 29 29 H 0.96998 * 120.00307 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.96456 * 0.05359 * 11 10 9 31 31 H 1.08006 * 119.80154 * 180.02562 * 12 11 10 32 32 H 1.08000 * 119.84017 * 179.97438 * 13 12 11 33 33 H 1.07991 * 120.04182 * 180.27887 * 14 13 12 34 34 H 1.09003 * 109.63897 * 325.20136 * 19 18 16 35 35 H 1.09001 * 109.64023 * 85.61017 * 19 18 16 36 36 H 1.08993 * 109.80850 * 63.87449 * 20 19 18 37 37 H 1.09008 * 109.80712 * 184.76714 * 20 19 18 38 38 H 1.08999 * 110.60739 * 340.90221 * 24 22 21 39 39 H 1.08996 * 110.60989 * 217.91510 * 24 22 21 40 40 H 1.08996 * 110.86626 * 281.53817 * 25 24 22 41 41 H 1.08997 * 110.86125 * 157.87448 * 25 24 22 42 42 H 1.08997 * 110.58121 * 202.41637 * 26 25 24 43 43 H 1.09006 * 110.70749 * 79.58056 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.3999 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0087 -1.2012 -0.0005 8 1 1.4688 -2.1365 -0.0005 9 8 3.3569 -1.2011 -0.0011 10 6 3.9722 -2.4038 0.1062 11 6 3.2246 -3.5736 0.0921 12 6 3.8531 -4.7974 0.2020 13 6 5.2313 -4.8693 0.3274 14 6 5.9900 -3.7186 0.3379 15 6 5.3674 -2.4727 0.2334 16 6 6.1730 -1.2368 0.2502 17 8 5.6924 -0.2035 0.6740 18 7 7.4417 -1.2533 -0.2042 19 6 7.9853 -0.0188 -0.7609 20 6 9.1026 -0.3769 -1.7484 21 8 10.0538 -1.1817 -1.0537 22 6 9.6119 -2.4505 -0.6183 23 1 9.7083 -3.1502 -1.4485 24 6 10.5082 -2.9370 0.5452 25 6 9.6725 -2.6053 1.8099 26 6 8.2345 -2.9723 1.3571 27 6 8.1789 -2.4909 -0.1097 28 1 7.6492 -3.2460 -0.6905 29 1 -0.4850 0.8400 -0.0004 30 1 2.1500 -3.5259 -0.0054 31 1 3.2673 -5.7047 0.1901 32 1 5.7137 -5.8318 0.4132 33 1 7.0641 -3.7801 0.4314 34 1 7.1977 0.5266 -1.2809 35 1 8.3895 0.5981 0.0416 36 1 8.6892 -0.9388 -2.5859 37 1 9.5794 0.5332 -2.1126 38 1 11.4525 -2.3927 0.5555 39 1 10.6834 -4.0103 0.4716 40 1 9.7437 -1.5457 2.0554 41 1 9.9832 -3.2220 2.6532 42 1 7.4962 -2.4453 1.9615 43 1 8.0758 -4.0493 1.4132 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281195780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:40 Heat of formation + Delta-G solvation = -18.170241 kcal Electronic energy + Delta-G solvation = -27979.195500 eV Core-core repulsion = 24185.654765 eV Total energy + Delta-G solvation = -3793.540735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.33094 -39.29325 -37.97745 -37.02534 -36.04784 -34.51319 -32.46611 -31.30599 -29.65018 -29.39133 -28.19538 -27.32464 -25.33433 -23.77738 -22.58756 -22.19079 -20.80383 -20.34336 -18.79286 -18.11354 -17.74001 -17.14159 -16.75083 -16.32384 -15.54870 -15.19750 -14.94578 -14.66856 -14.31951 -14.26439 -14.08772 -13.83388 -13.76519 -13.21726 -12.94532 -12.68990 -12.36444 -12.30810 -12.03415 -11.96984 -11.59446 -11.46174 -11.32875 -11.26211 -11.14323 -10.99015 -10.80244 -10.70478 -10.19529 -10.05531 -9.83490 -9.60506 -9.09497 -8.90860 -8.36034 -8.30655 -7.47768 -6.48254 -4.14107 1.58372 2.16973 3.03892 3.23451 3.30222 3.31472 3.59756 3.62866 4.20132 4.25736 4.31871 4.41463 4.70226 4.74223 4.76254 4.99612 5.04007 5.05972 5.09359 5.17867 5.25009 5.30929 5.36937 5.44711 5.50945 5.56946 5.64208 5.72162 5.74878 5.82320 5.89052 5.94097 6.04014 6.08323 6.10735 6.37033 6.56093 6.81441 6.85053 6.99046 7.14842 7.17112 7.47375 7.59837 7.73070 7.93935 8.64664 8.86912 9.48581 10.57211 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.005054 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.457295 B = 5539.053058 C = 6783.369565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.072 3.928 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.233 1.233 7 C -0.395 4.395 8 H 0.108 0.892 9 O -0.179 6.179 10 C 0.200 3.800 11 C -0.227 4.227 12 C -0.053 4.053 13 C -0.221 4.221 14 C -0.101 4.101 15 C -0.224 4.224 16 C 0.571 3.429 17 O -0.502 6.502 18 N -0.620 5.620 19 C 0.092 3.908 20 C 0.057 3.943 21 O -0.376 6.376 22 C 0.091 3.909 23 H 0.064 0.936 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.149 4.149 27 C 0.102 3.898 28 H 0.094 0.906 29 H 0.282 0.718 30 H 0.137 0.863 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.171 0.829 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.689 -7.550 -1.370 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.156 1.156 7 C -0.470 4.470 8 H 0.126 0.874 9 O -0.080 6.080 10 C 0.144 3.856 11 C -0.246 4.246 12 C -0.071 4.071 13 C -0.240 4.240 14 C -0.118 4.118 15 C -0.229 4.229 16 C 0.362 3.638 17 O -0.376 6.376 18 N -0.358 5.358 19 C -0.031 4.031 20 C -0.020 4.020 21 O -0.295 6.295 22 C 0.033 3.967 23 H 0.082 0.918 24 C -0.158 4.158 25 C -0.160 4.160 26 C -0.187 4.187 27 C -0.003 4.003 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.155 0.845 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.187 0.813 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 19.460 -6.498 -1.141 20.548 hybrid contribution -0.479 0.449 -0.180 0.680 sum 18.982 -6.049 -1.321 19.966 Atomic orbital electron populations 1.69631 1.05748 1.28887 1.46384 1.24474 0.94963 0.99147 0.94748 0.86339 0.81987 0.80790 0.79394 1.20074 1.20923 1.15598 1.20870 0.76879 0.96751 1.52472 0.87446 1.83681 1.22426 1.25244 1.76644 1.19001 0.90153 0.85813 0.90681 1.21254 1.01283 0.91644 1.10465 1.20997 0.94565 0.96680 0.94875 1.20613 0.93955 0.97421 1.12045 1.22913 1.02329 0.91084 0.95466 1.18881 0.91029 0.93215 1.19727 1.18286 0.80175 0.88832 0.76462 1.90831 1.71185 1.34166 1.41433 1.46713 1.13050 1.10084 1.65925 1.21872 0.97217 0.86711 0.97260 1.22924 0.89923 0.95618 0.93525 1.87347 1.38266 1.28775 1.75092 1.22401 0.91969 0.85574 0.96761 0.91802 1.22691 0.98853 1.01020 0.93187 1.22634 0.94306 1.01928 0.97155 1.23347 0.98260 1.01661 0.95422 1.21923 0.93292 0.87906 0.97213 0.88842 0.90842 0.84496 0.86976 0.87083 0.81306 0.89738 0.91480 0.92405 0.87264 0.90075 0.89896 0.91088 0.90972 0.89997 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.38 13.96 55.48 0.77 -24.61 16 2 C 0.07 2.07 5.49 -17.51 -0.10 1.98 16 3 Si 0.89 22.86 28.62 -169.99 -4.86 18.00 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.23 -6.37 7.03 56.52 0.40 -5.97 16 7 C -0.39 -11.33 9.95 30.90 0.31 -11.02 16 8 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 9 O -0.18 -4.93 7.07 -18.59 -0.13 -5.06 16 10 C 0.20 4.77 6.63 -38.60 -0.26 4.51 16 11 C -0.23 -4.84 9.16 -39.44 -0.36 -5.20 16 12 C -0.05 -0.90 10.03 -39.54 -0.40 -1.30 16 13 C -0.22 -3.41 10.03 -39.61 -0.40 -3.81 16 14 C -0.10 -1.62 6.91 -39.20 -0.27 -1.89 16 15 C -0.22 -4.60 5.71 -104.81 -0.60 -5.20 16 16 C 0.57 11.82 5.82 -12.47 -0.07 11.75 16 17 O -0.50 -12.60 15.69 -14.09 -0.22 -12.83 16 18 N -0.62 -9.95 3.00 -169.70 -0.51 -10.46 16 19 C 0.09 1.32 6.17 -4.17 -0.03 1.29 16 20 C 0.06 0.62 7.02 37.34 0.26 0.88 16 21 O -0.38 -4.42 10.12 -35.01 -0.35 -4.77 16 22 C 0.09 0.96 3.61 -26.28 -0.09 0.86 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 C -0.12 -1.02 6.60 -24.68 -0.16 -1.18 16 25 C -0.12 -1.18 6.94 -24.43 -0.17 -1.35 16 26 C -0.15 -1.70 4.41 -24.81 -0.11 -1.81 16 27 C 0.10 1.27 2.44 -68.75 -0.17 1.10 16 28 H 0.09 1.16 5.33 -51.93 -0.28 0.88 16 29 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.14 3.03 5.64 -52.49 -0.30 2.73 16 31 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 32 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.17 2.16 1.30 -76.44 -0.10 2.06 16 34 H 0.08 1.29 7.93 -51.93 -0.41 0.88 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.11 0.93 8.14 -51.92 -0.42 0.51 16 38 H 0.08 0.69 8.03 -51.93 -0.42 0.27 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.18 6.68 -51.93 -0.35 0.84 16 43 H 0.09 0.86 6.78 -51.93 -0.35 0.51 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -33.48 335.17 -8.29 -41.77 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.43 Total: 3.29 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -2.61 Total: -10.39 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.27 Total: -35.07 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.71 Total: -22.66 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.86 Total: 18.00 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.48 -8.29 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281195780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.603 kcal (2) G-P(sol) polarization free energy of solvation -33.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds