Wall clock time and date at job start Tue Mar 31 2020 11:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86808 * 119.99720 * 2 1 4 4 H 1.48500 * 109.46666 * 239.99558 * 3 2 1 5 5 H 1.48493 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47152 * 119.99667 * 3 2 1 7 7 C 1.37873 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47191 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47076 * 180.02562 * 10 9 7 12 12 C 1.34782 * 120.00126 * 179.97438 * 11 10 9 13 13 O 1.21582 * 119.99778 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00130 * 179.97438 * 12 11 10 15 15 N 1.40093 * 120.00040 * 0.02562 * 14 12 11 16 16 C 1.39202 * 120.00431 * 179.97438 * 15 14 12 17 17 C 1.39552 * 120.09506 * 179.97438 * 16 15 14 18 18 C 1.38409 * 117.95316 * 179.97438 * 17 16 15 19 19 C 1.39449 * 117.98534 * 0.02562 * 18 17 16 20 20 N 1.40030 * 120.05872 * 179.97438 * 19 18 17 21 21 C 1.37131 * 126.48039 * 185.19195 * 20 19 18 22 22 C 1.34639 * 106.82885 * 180.21409 * 21 20 19 23 23 N 1.34128 * 108.20768 * 359.78025 * 22 21 20 24 24 C 1.30510 * 109.36081 * 359.97438 * 23 22 21 25 25 N 1.32206 * 119.88574 * 0.25579 * 19 18 17 26 26 N 1.28352 * 122.19787 * 359.46036 * 25 19 18 27 27 H 0.96996 * 119.99531 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46794 * 59.99658 * 9 7 2 29 29 H 1.08998 * 109.46806 * 299.99949 * 9 7 2 30 30 H 1.08992 * 109.47347 * 59.99775 * 10 9 7 31 31 H 1.09002 * 109.46974 * 300.00130 * 10 9 7 32 32 H 0.97001 * 120.00123 * 359.97438 * 11 10 9 33 33 H 0.97003 * 119.99866 * 180.02562 * 14 12 11 34 34 H 0.97003 * 120.00093 * 0.02562 * 15 14 12 35 35 H 1.07998 * 121.02034 * 0.02562 * 17 16 15 36 36 H 1.07998 * 121.00463 * 179.97438 * 18 17 16 37 37 H 1.07999 * 126.58210 * 359.97438 * 21 20 19 38 38 H 1.08004 * 125.89233 * 179.75298 * 22 21 20 39 39 H 1.08002 * 125.71753 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5130 -4.9307 0.0012 12 6 2.1869 -6.0979 0.0016 13 8 3.4027 -6.0979 0.0020 14 7 1.5130 -7.2651 0.0016 15 7 0.1121 -7.2652 0.0006 16 6 -0.5840 -8.4707 0.0000 17 6 -1.9795 -8.4729 -0.0005 18 6 -2.6263 -9.6966 -0.0016 19 6 -1.8434 -10.8506 -0.0017 20 7 -2.4526 -12.1114 -0.0022 21 6 -1.8186 -13.3233 0.0974 22 6 -2.7758 -14.2690 0.0511 23 7 -3.9636 -13.6575 -0.0685 24 6 -3.7839 -12.3652 -0.0980 25 7 -0.5250 -10.7522 0.0045 26 7 0.0762 -9.6182 0.0003 27 1 -0.4849 0.8401 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.8714 -3.6039 0.8922 31 1 2.8727 -3.6046 -0.8877 32 1 0.5429 -4.9307 0.0005 33 1 1.9981 -8.1052 0.0022 34 1 -0.3730 -6.4251 -0.0005 35 1 -2.5376 -7.5483 -0.0008 36 1 -3.7047 -9.7558 -0.0016 37 1 -0.7553 -13.4876 0.1909 38 1 -2.6149 -15.3358 0.1010 39 1 -4.5626 -11.6222 -0.1886 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286772279.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:49 Heat of formation + Delta-G solvation = 146.614947 kcal Electronic energy + Delta-G solvation = -24258.663782 eV Core-core repulsion = 20433.313827 eV Total energy + Delta-G solvation = -3825.349955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.79725 -41.40475 -39.99041 -37.14627 -35.13216 -34.93335 -33.91486 -32.92502 -31.74762 -29.94218 -29.63378 -29.10114 -25.47174 -24.84742 -24.63931 -22.05506 -21.67049 -21.41965 -20.76331 -19.40525 -19.09939 -18.94555 -17.52980 -16.49056 -16.48257 -16.15635 -15.68079 -15.44532 -15.05173 -14.98581 -14.61858 -14.52493 -14.38905 -14.24387 -13.80526 -13.63443 -13.61607 -12.78566 -12.38564 -12.31235 -11.37530 -11.33875 -11.12248 -10.84611 -10.75535 -10.62445 -10.48308 -10.40928 -10.23521 -9.75059 -9.72679 -9.41666 -9.01611 -8.79585 -8.50549 -7.95001 -6.19657 -4.22690 0.13960 0.18338 1.46839 1.75259 1.93508 2.70081 2.94205 3.02232 3.22900 3.25097 3.29244 3.32665 3.60839 3.70982 3.89272 3.97160 4.24117 4.33547 4.44242 4.61875 4.84901 5.04298 5.08540 5.17998 5.27780 5.35877 5.73378 5.91620 6.09171 6.21146 6.26095 6.56430 6.64361 6.65267 6.86848 7.02473 7.39507 7.46527 7.52449 7.78275 7.98936 8.14790 8.22016 8.54610 8.82729 9.42837 10.91868 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.031388 B = 0.001922 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.842963 B =14567.344922 C =15437.543318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.136 3.864 11 N -0.734 5.734 12 C 0.707 3.293 13 O -0.571 6.571 14 N -0.533 5.533 15 N -0.502 5.502 16 C 0.342 3.658 17 C -0.140 4.140 18 C -0.078 4.078 19 C 0.227 3.773 20 N -0.399 5.399 21 C -0.026 4.026 22 C -0.030 4.030 23 N -0.478 5.478 24 C 0.188 3.812 25 N -0.199 5.199 26 N -0.278 5.278 27 H 0.263 0.737 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.387 0.613 33 H 0.440 0.560 34 H 0.437 0.563 35 H 0.166 0.834 36 H 0.162 0.838 37 H 0.184 0.816 38 H 0.177 0.823 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.054 -22.037 0.104 24.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.014 3.986 11 N -0.390 5.390 12 C 0.407 3.593 13 O -0.445 6.445 14 N -0.291 5.291 15 N -0.235 5.235 16 C 0.098 3.902 17 C -0.175 4.175 18 C -0.108 4.108 19 C -0.013 4.013 20 N -0.082 5.082 21 C -0.156 4.156 22 C -0.175 4.175 23 N -0.195 5.195 24 C -0.094 4.094 25 N -0.044 5.044 26 N -0.131 5.131 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.220 0.780 33 H 0.286 0.714 34 H 0.283 0.717 35 H 0.184 0.816 36 H 0.179 0.821 37 H 0.201 0.799 38 H 0.194 0.806 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.312 -22.718 0.059 24.191 hybrid contribution -0.739 2.087 0.038 2.214 sum -9.051 -20.631 0.097 22.530 Atomic orbital electron populations 1.69933 1.06102 1.27108 1.50173 1.24988 0.94920 0.99467 0.94827 0.86546 0.79518 0.82486 0.78858 1.20059 1.21220 1.20054 1.20983 0.93294 0.90222 1.51706 0.92160 1.19333 0.94218 0.91075 0.97810 1.21738 0.95812 0.79850 1.01235 1.45610 1.09464 1.05678 1.78221 1.15870 0.85171 0.79754 0.78550 1.91020 1.10414 1.84205 1.58855 1.44760 0.92288 1.09715 1.82315 1.43062 0.95605 1.05091 1.79701 1.19858 0.89301 0.87973 0.93053 1.21615 0.92015 1.00174 1.03661 1.21696 1.02095 0.89960 0.97035 1.19631 0.91804 0.84899 1.04975 1.42832 1.07951 1.03743 1.53705 1.22993 1.00635 0.83062 1.08932 1.22400 0.87704 0.99943 1.07483 1.70339 1.27082 1.03794 1.18313 1.25329 0.83250 0.94968 1.05811 1.72664 1.06260 1.16985 1.08464 1.72956 1.28744 0.92491 1.18877 0.92728 0.95928 0.95935 0.92220 0.92228 0.77963 0.71390 0.71719 0.81613 0.82055 0.79921 0.80598 0.77205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 13.29 55.43 0.74 -24.19 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.52 -13.81 9.11 -34.44 -0.31 -14.13 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 2.67 5.61 -4.05 -0.02 2.64 16 11 N -0.73 -11.40 5.52 -65.24 -0.36 -11.76 16 12 C 0.71 11.26 8.68 -86.91 -0.75 10.50 16 13 O -0.57 -11.45 17.18 5.29 0.09 -11.36 16 14 N -0.53 -6.51 6.30 27.63 0.17 -6.34 16 15 N -0.50 -4.51 6.43 31.25 0.20 -4.31 16 16 C 0.34 2.97 7.69 -154.68 -1.19 1.78 16 17 C -0.14 -0.75 10.05 -39.03 -0.39 -1.15 16 18 C -0.08 -0.41 9.59 -39.07 -0.37 -0.79 16 19 C 0.23 1.93 7.58 -154.05 -1.17 0.76 16 20 N -0.40 -3.35 2.99 -63.66 -0.19 -3.54 16 21 C -0.03 -0.22 11.20 -16.46 -0.18 -0.40 16 22 C -0.03 -0.26 11.85 -17.82 -0.21 -0.47 16 23 N -0.48 -4.67 11.24 -14.47 -0.16 -4.84 16 24 C 0.19 1.40 11.92 -89.61 -1.07 0.33 16 25 N -0.20 -2.14 11.06 31.38 0.35 -1.80 16 26 N -0.28 -3.04 10.54 31.26 0.33 -2.71 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.39 4.81 6.39 -40.82 -0.26 4.55 16 33 H 0.44 5.37 8.08 -182.60 -1.47 3.90 16 34 H 0.44 3.01 6.71 -182.60 -1.23 1.78 16 35 H 0.17 0.33 8.06 -52.49 -0.42 -0.09 16 36 H 0.16 0.25 6.88 -52.49 -0.36 -0.11 16 37 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.18 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.21 0.66 7.13 -52.49 -0.37 0.28 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -34.85 347.20 -10.74 -45.58 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.20 Total: 3.64 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -5.92 Total: 0.76 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 1.08 Total: -59.47 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.85 -10.74 -45.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286772279.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.200 kcal (2) G-P(sol) polarization free energy of solvation -34.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds