Wall clock time and date at job start Tue Mar 31 2020 11:20:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86808 * 119.99720 * 2 1
4 4 H 1.48500 * 109.46666 * 239.99558 * 3 2 1
5 5 H 1.48493 * 109.46981 * 359.97438 * 3 2 1
6 6 H 1.48500 * 109.47152 * 119.99667 * 3 2 1
7 7 C 1.37873 * 120.00207 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00062 * 180.02562 * 7 2 1
9 9 C 1.50706 * 120.00028 * 0.02562 * 7 2 1
10 10 C 1.52994 * 109.47191 * 180.02562 * 9 7 2
11 11 N 1.46493 * 109.47076 * 180.02562 * 10 9 7
12 12 C 1.34782 * 120.00126 * 179.97438 * 11 10 9
13 13 O 1.21582 * 119.99778 * 359.97438 * 12 11 10
14 14 N 1.34775 * 120.00130 * 179.97438 * 12 11 10
15 15 N 1.40093 * 120.00040 * 0.02562 * 14 12 11
16 16 C 1.39202 * 120.00431 * 179.97438 * 15 14 12
17 17 C 1.39552 * 120.09506 * 179.97438 * 16 15 14
18 18 C 1.38409 * 117.95316 * 179.97438 * 17 16 15
19 19 C 1.39449 * 117.98534 * 0.02562 * 18 17 16
20 20 N 1.40030 * 120.05872 * 179.97438 * 19 18 17
21 21 C 1.37131 * 126.48039 * 185.19195 * 20 19 18
22 22 C 1.34639 * 106.82885 * 180.21409 * 21 20 19
23 23 N 1.34128 * 108.20768 * 359.78025 * 22 21 20
24 24 C 1.30510 * 109.36081 * 359.97438 * 23 22 21
25 25 N 1.32206 * 119.88574 * 0.25579 * 19 18 17
26 26 N 1.28352 * 122.19787 * 359.46036 * 25 19 18
27 27 H 0.96996 * 119.99531 * 0.02562 * 1 2 3
28 28 H 1.09004 * 109.46794 * 59.99658 * 9 7 2
29 29 H 1.08998 * 109.46806 * 299.99949 * 9 7 2
30 30 H 1.08992 * 109.47347 * 59.99775 * 10 9 7
31 31 H 1.09002 * 109.46974 * 300.00130 * 10 9 7
32 32 H 0.97001 * 120.00123 * 359.97438 * 11 10 9
33 33 H 0.97003 * 119.99866 * 180.02562 * 14 12 11
34 34 H 0.97003 * 120.00093 * 0.02562 * 15 14 12
35 35 H 1.07998 * 121.02034 * 0.02562 * 17 16 15
36 36 H 1.07998 * 121.00463 * 179.97438 * 18 17 16
37 37 H 1.07999 * 126.58210 * 359.97438 * 21 20 19
38 38 H 1.08004 * 125.89233 * 179.75298 * 22 21 20
39 39 H 1.08002 * 125.71753 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.1030 1.6964 -1.2125
5 1 1.2841 2.7464 -0.0006
6 1 3.1029 1.6966 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1940 0.0010
9 6 1.2512 -2.4992 0.0005
10 6 2.2454 -3.6620 0.0018
11 7 1.5130 -4.9307 0.0012
12 6 2.1869 -6.0979 0.0016
13 8 3.4027 -6.0979 0.0020
14 7 1.5130 -7.2651 0.0016
15 7 0.1121 -7.2652 0.0006
16 6 -0.5840 -8.4707 0.0000
17 6 -1.9795 -8.4729 -0.0005
18 6 -2.6263 -9.6966 -0.0016
19 6 -1.8434 -10.8506 -0.0017
20 7 -2.4526 -12.1114 -0.0022
21 6 -1.8186 -13.3233 0.0974
22 6 -2.7758 -14.2690 0.0511
23 7 -3.9636 -13.6575 -0.0685
24 6 -3.7839 -12.3652 -0.0980
25 7 -0.5250 -10.7522 0.0045
26 7 0.0762 -9.6182 0.0003
27 1 -0.4849 0.8401 -0.0004
28 1 0.6248 -2.5571 -0.8897
29 1 0.6242 -2.5567 0.8903
30 1 2.8714 -3.6039 0.8922
31 1 2.8727 -3.6046 -0.8877
32 1 0.5429 -4.9307 0.0005
33 1 1.9981 -8.1052 0.0022
34 1 -0.3730 -6.4251 -0.0005
35 1 -2.5376 -7.5483 -0.0008
36 1 -3.7047 -9.7558 -0.0016
37 1 -0.7553 -13.4876 0.1909
38 1 -2.6149 -15.3358 0.1010
39 1 -4.5626 -11.6222 -0.1886
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000286772279.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:20:48
Heat of formation + Delta-G solvation = 123.482657 kcal
Electronic energy + Delta-G solvation = -24259.666873 eV
Core-core repulsion = 20433.313827 eV
Total energy + Delta-G solvation = -3826.353046 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 317.134 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-43.39117 -42.05958 -41.18991 -38.05422 -36.70943 -35.62532 -34.83645 -34.49914
-32.56436 -31.28238 -30.51539 -29.92544 -26.81484 -25.91856 -25.26591 -23.33595
-22.52668 -22.32007 -21.88795 -20.25384 -19.94455 -19.70064 -18.46703 -18.20066
-17.18034 -17.14792 -16.85250 -16.50618 -16.18607 -15.92806 -15.83447 -15.35227
-15.12622 -15.02123 -14.93245 -14.75470 -14.27504 -14.12688 -13.71382 -13.22471
-12.97568 -12.93440 -12.54549 -12.26718 -12.05792 -11.87137 -11.56754 -11.43568
-11.34606 -11.25191 -10.82964 -10.60415 -10.53309 -10.12660 -9.62038 -8.78215
-8.23120 -6.32061 -0.41482 -0.33446 0.65465 1.15844 1.32028 1.44294
1.45119 1.52968 1.87666 1.90923 2.09041 2.42698 2.47213 2.86899
3.12550 3.16153 3.40745 3.49645 3.76938 3.92892 4.00451 4.39067
4.39818 4.51881 4.53075 4.58566 4.71079 4.79671 4.87529 5.13027
5.16587 5.21698 5.46611 5.60754 5.66185 5.75852 5.84478 6.08978
6.12966 6.19582 6.80243 6.92394 6.96389 7.30036 7.37049 7.54745
8.88123
Molecular weight = 317.13amu
Principal moments of inertia in cm(-1)
A = 0.031388 B = 0.001922 C = 0.001813
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 891.842963 B =14567.344922 C =15437.543318
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C 0.011 3.989
3 Si 0.960 3.040
4 H -0.270 1.270
5 H -0.282 1.282
6 H -0.270 1.270
7 C -0.547 4.547
8 H 0.058 0.942
9 C 0.024 3.976
10 C 0.156 3.844
11 N -0.725 5.725
12 C 0.711 3.289
13 O -0.617 6.617
14 N -0.523 5.523
15 N -0.499 5.499
16 C 0.329 3.671
17 C -0.120 4.120
18 C -0.069 4.069
19 C 0.224 3.776
20 N -0.406 5.406
21 C -0.045 4.045
22 C -0.037 4.037
23 N -0.515 5.515
24 C 0.199 3.801
25 N -0.239 5.239
26 N -0.313 5.313
27 H 0.265 0.735
28 H 0.014 0.986
29 H 0.014 0.986
30 H 0.049 0.951
31 H 0.049 0.951
32 H 0.404 0.596
33 H 0.442 0.558
34 H 0.447 0.553
35 H 0.208 0.792
36 H 0.208 0.792
37 H 0.185 0.815
38 H 0.192 0.808
39 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.155 -21.559 0.068 24.750
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.562 5.562
2 C -0.188 4.188
3 Si 0.785 3.215
4 H -0.196 1.196
5 H -0.207 1.207
6 H -0.195 1.195
7 C -0.586 4.586
8 H 0.076 0.924
9 C -0.014 4.014
10 C 0.032 3.968
11 N -0.381 5.381
12 C 0.410 3.590
13 O -0.495 6.495
14 N -0.278 5.278
15 N -0.235 5.235
16 C 0.085 3.915
17 C -0.154 4.154
18 C -0.098 4.098
19 C -0.017 4.017
20 N -0.089 5.089
21 C -0.175 4.175
22 C -0.182 4.182
23 N -0.232 5.232
24 C -0.082 4.082
25 N -0.082 5.082
26 N -0.165 5.165
27 H 0.074 0.926
28 H 0.032 0.968
29 H 0.032 0.968
30 H 0.067 0.933
31 H 0.067 0.933
32 H 0.240 0.760
33 H 0.287 0.713
34 H 0.295 0.705
35 H 0.225 0.775
36 H 0.225 0.775
37 H 0.202 0.798
38 H 0.209 0.791
39 H 0.270 0.730
Dipole moment (debyes) X Y Z Total
from point charges -10.455 -22.313 0.025 24.641
hybrid contribution -0.226 1.799 0.047 1.814
sum -10.680 -20.513 0.072 23.127
Atomic orbital electron populations
1.70021 1.07291 1.27979 1.50945 1.25776 0.95779 1.02765 0.94517
0.85577 0.78370 0.78564 0.79008 1.19553 1.20714 1.19545 1.21428
0.93639 0.91938 1.51549 0.92365 1.19139 0.94220 0.91261 0.96770
1.21217 0.94838 0.80525 1.00246 1.45174 1.10153 1.04436 1.78352
1.15778 0.84611 0.80328 0.78311 1.90986 1.12544 1.85163 1.60772
1.44355 0.94335 1.08337 1.80735 1.43019 0.93587 1.05958 1.80974
1.20153 0.90708 0.87164 0.93445 1.22094 0.90392 1.01951 1.00965
1.22213 1.04030 0.88360 0.95202 1.19992 0.91768 0.85876 1.04088
1.42972 1.08374 1.03664 1.53916 1.23152 1.00994 0.83574 1.09779
1.22724 0.87558 1.00849 1.07038 1.70351 1.27664 1.05180 1.20025
1.26197 0.83515 0.95192 1.03336 1.72555 1.07854 1.17200 1.10564
1.72828 1.30103 0.93272 1.20286 0.92574 0.96800 0.96810 0.93268
0.93279 0.75976 0.71260 0.70512 0.77468 0.77531 0.79786 0.79148
0.73024
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -51.10 13.29 21.45 0.28 -50.81 16
2 C 0.01 0.58 5.46 84.65 0.46 1.04 16
3 Si 0.96 41.85 29.54 68.60 2.03 43.88 16
4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16
5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16
6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16
7 C -0.55 -28.87 9.11 25.60 0.23 -28.63 16
8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16
9 C 0.02 1.09 5.09 29.85 0.15 1.24 16
10 C 0.16 6.12 5.61 86.38 0.48 6.61 16
11 N -0.72 -22.07 5.52 -478.57 -2.64 -24.71 16
12 C 0.71 22.54 8.68 179.05 1.55 24.10 16
13 O -0.62 -25.18 17.18 -3.97 -0.07 -25.25 16
14 N -0.52 -12.56 6.30 -184.75 -1.16 -13.72 16
15 N -0.50 -8.14 6.43 -55.05 -0.35 -8.50 16
16 C 0.33 5.09 7.69 133.10 1.02 6.12 16
17 C -0.12 -0.82 10.05 22.63 0.23 -0.60 16
18 C -0.07 -0.45 9.59 22.60 0.22 -0.23 16
19 C 0.22 3.38 7.58 132.84 1.01 4.39 16
20 N -0.41 -6.16 2.99 -355.32 -1.06 -7.22 16
21 C -0.05 -0.76 11.20 83.04 0.93 0.17 16
22 C -0.04 -0.62 11.85 83.52 0.99 0.37 16
23 N -0.51 -9.34 11.24 -199.70 -2.25 -11.58 16
24 C 0.20 2.43 11.92 179.99 2.15 4.58 16
25 N -0.24 -5.06 11.06 -54.64 -0.60 -5.67 16
26 N -0.31 -6.74 10.54 -55.01 -0.58 -7.32 16
27 H 0.27 13.92 8.31 -92.71 -0.77 13.14 16
28 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16
29 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16
30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
31 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16
32 H 0.40 9.49 6.39 -92.71 -0.59 8.90 16
33 H 0.44 10.90 8.08 -213.32 -1.72 9.18 16
34 H 0.45 5.09 6.71 -213.32 -1.43 3.66 16
35 H 0.21 -0.36 8.06 -2.91 -0.02 -0.38 16
36 H 0.21 -0.63 6.88 -2.91 -0.02 -0.65 16
37 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16
38 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16
39 H 0.25 0.38 7.13 -2.91 -0.02 0.36 16
Total: -1.00 -77.50 347.20 0.41 -77.09
By element:
Atomic # 1 Polarization: 17.27 SS G_CDS: -2.61 Total: 14.66 kcal
Atomic # 6 Polarization: 9.72 SS G_CDS: 9.42 Total: 19.15 kcal
Atomic # 7 Polarization: -121.17 SS G_CDS: -8.36 Total: -129.53 kcal
Atomic # 8 Polarization: -25.18 SS G_CDS: -0.07 Total: -25.25 kcal
Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal
Total: -77.50 0.41 -77.09 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000286772279.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 200.575 kcal
(2) G-P(sol) polarization free energy of solvation -77.503 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.072 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.093 kcal
(6) G-S(sol) free energy of system = (1) + (5) 123.483 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds