Wall clock time and date at job start Tue Mar 31 2020 11:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86808 * 119.99720 * 2 1 4 4 H 1.48500 * 109.46666 * 239.99558 * 3 2 1 5 5 H 1.48493 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47152 * 119.99667 * 3 2 1 7 7 C 1.37873 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47191 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47076 * 180.02562 * 10 9 7 12 12 C 1.34782 * 120.00126 * 179.97438 * 11 10 9 13 13 O 1.21582 * 119.99778 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00130 * 179.97438 * 12 11 10 15 15 N 1.40093 * 120.00040 * 0.02562 * 14 12 11 16 16 C 1.39202 * 120.00431 * 179.97438 * 15 14 12 17 17 C 1.39552 * 120.09506 * 179.97438 * 16 15 14 18 18 C 1.38409 * 117.95316 * 179.97438 * 17 16 15 19 19 C 1.39449 * 117.98534 * 0.02562 * 18 17 16 20 20 N 1.40030 * 120.05872 * 179.97438 * 19 18 17 21 21 C 1.37131 * 126.48039 * 185.19195 * 20 19 18 22 22 C 1.34639 * 106.82885 * 180.21409 * 21 20 19 23 23 N 1.34128 * 108.20768 * 359.78025 * 22 21 20 24 24 C 1.30510 * 109.36081 * 359.97438 * 23 22 21 25 25 N 1.32206 * 119.88574 * 0.25579 * 19 18 17 26 26 N 1.28352 * 122.19787 * 359.46036 * 25 19 18 27 27 H 0.96996 * 119.99531 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46794 * 59.99658 * 9 7 2 29 29 H 1.08998 * 109.46806 * 299.99949 * 9 7 2 30 30 H 1.08992 * 109.47347 * 59.99775 * 10 9 7 31 31 H 1.09002 * 109.46974 * 300.00130 * 10 9 7 32 32 H 0.97001 * 120.00123 * 359.97438 * 11 10 9 33 33 H 0.97003 * 119.99866 * 180.02562 * 14 12 11 34 34 H 0.97003 * 120.00093 * 0.02562 * 15 14 12 35 35 H 1.07998 * 121.02034 * 0.02562 * 17 16 15 36 36 H 1.07998 * 121.00463 * 179.97438 * 18 17 16 37 37 H 1.07999 * 126.58210 * 359.97438 * 21 20 19 38 38 H 1.08004 * 125.89233 * 179.75298 * 22 21 20 39 39 H 1.08002 * 125.71753 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5130 -4.9307 0.0012 12 6 2.1869 -6.0979 0.0016 13 8 3.4027 -6.0979 0.0020 14 7 1.5130 -7.2651 0.0016 15 7 0.1121 -7.2652 0.0006 16 6 -0.5840 -8.4707 0.0000 17 6 -1.9795 -8.4729 -0.0005 18 6 -2.6263 -9.6966 -0.0016 19 6 -1.8434 -10.8506 -0.0017 20 7 -2.4526 -12.1114 -0.0022 21 6 -1.8186 -13.3233 0.0974 22 6 -2.7758 -14.2690 0.0511 23 7 -3.9636 -13.6575 -0.0685 24 6 -3.7839 -12.3652 -0.0980 25 7 -0.5250 -10.7522 0.0045 26 7 0.0762 -9.6182 0.0003 27 1 -0.4849 0.8401 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.8714 -3.6039 0.8922 31 1 2.8727 -3.6046 -0.8877 32 1 0.5429 -4.9307 0.0005 33 1 1.9981 -8.1052 0.0022 34 1 -0.3730 -6.4251 -0.0005 35 1 -2.5376 -7.5483 -0.0008 36 1 -3.7047 -9.7558 -0.0016 37 1 -0.7553 -13.4876 0.1909 38 1 -2.6149 -15.3358 0.1010 39 1 -4.5626 -11.6222 -0.1886 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286772279.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:48 Heat of formation + Delta-G solvation = 123.482657 kcal Electronic energy + Delta-G solvation = -24259.666873 eV Core-core repulsion = 20433.313827 eV Total energy + Delta-G solvation = -3826.353046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.39117 -42.05958 -41.18991 -38.05422 -36.70943 -35.62532 -34.83645 -34.49914 -32.56436 -31.28238 -30.51539 -29.92544 -26.81484 -25.91856 -25.26591 -23.33595 -22.52668 -22.32007 -21.88795 -20.25384 -19.94455 -19.70064 -18.46703 -18.20066 -17.18034 -17.14792 -16.85250 -16.50618 -16.18607 -15.92806 -15.83447 -15.35227 -15.12622 -15.02123 -14.93245 -14.75470 -14.27504 -14.12688 -13.71382 -13.22471 -12.97568 -12.93440 -12.54549 -12.26718 -12.05792 -11.87137 -11.56754 -11.43568 -11.34606 -11.25191 -10.82964 -10.60415 -10.53309 -10.12660 -9.62038 -8.78215 -8.23120 -6.32061 -0.41482 -0.33446 0.65465 1.15844 1.32028 1.44294 1.45119 1.52968 1.87666 1.90923 2.09041 2.42698 2.47213 2.86899 3.12550 3.16153 3.40745 3.49645 3.76938 3.92892 4.00451 4.39067 4.39818 4.51881 4.53075 4.58566 4.71079 4.79671 4.87529 5.13027 5.16587 5.21698 5.46611 5.60754 5.66185 5.75852 5.84478 6.08978 6.12966 6.19582 6.80243 6.92394 6.96389 7.30036 7.37049 7.54745 8.88123 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.031388 B = 0.001922 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.842963 B =14567.344922 C =15437.543318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.156 3.844 11 N -0.725 5.725 12 C 0.711 3.289 13 O -0.617 6.617 14 N -0.523 5.523 15 N -0.499 5.499 16 C 0.329 3.671 17 C -0.120 4.120 18 C -0.069 4.069 19 C 0.224 3.776 20 N -0.406 5.406 21 C -0.045 4.045 22 C -0.037 4.037 23 N -0.515 5.515 24 C 0.199 3.801 25 N -0.239 5.239 26 N -0.313 5.313 27 H 0.265 0.735 28 H 0.014 0.986 29 H 0.014 0.986 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.404 0.596 33 H 0.442 0.558 34 H 0.447 0.553 35 H 0.208 0.792 36 H 0.208 0.792 37 H 0.185 0.815 38 H 0.192 0.808 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.155 -21.559 0.068 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.032 3.968 11 N -0.381 5.381 12 C 0.410 3.590 13 O -0.495 6.495 14 N -0.278 5.278 15 N -0.235 5.235 16 C 0.085 3.915 17 C -0.154 4.154 18 C -0.098 4.098 19 C -0.017 4.017 20 N -0.089 5.089 21 C -0.175 4.175 22 C -0.182 4.182 23 N -0.232 5.232 24 C -0.082 4.082 25 N -0.082 5.082 26 N -0.165 5.165 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.032 0.968 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.240 0.760 33 H 0.287 0.713 34 H 0.295 0.705 35 H 0.225 0.775 36 H 0.225 0.775 37 H 0.202 0.798 38 H 0.209 0.791 39 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -10.455 -22.313 0.025 24.641 hybrid contribution -0.226 1.799 0.047 1.814 sum -10.680 -20.513 0.072 23.127 Atomic orbital electron populations 1.70021 1.07291 1.27979 1.50945 1.25776 0.95779 1.02765 0.94517 0.85577 0.78370 0.78564 0.79008 1.19553 1.20714 1.19545 1.21428 0.93639 0.91938 1.51549 0.92365 1.19139 0.94220 0.91261 0.96770 1.21217 0.94838 0.80525 1.00246 1.45174 1.10153 1.04436 1.78352 1.15778 0.84611 0.80328 0.78311 1.90986 1.12544 1.85163 1.60772 1.44355 0.94335 1.08337 1.80735 1.43019 0.93587 1.05958 1.80974 1.20153 0.90708 0.87164 0.93445 1.22094 0.90392 1.01951 1.00965 1.22213 1.04030 0.88360 0.95202 1.19992 0.91768 0.85876 1.04088 1.42972 1.08374 1.03664 1.53916 1.23152 1.00994 0.83574 1.09779 1.22724 0.87558 1.00849 1.07038 1.70351 1.27664 1.05180 1.20025 1.26197 0.83515 0.95192 1.03336 1.72555 1.07854 1.17200 1.10564 1.72828 1.30103 0.93272 1.20286 0.92574 0.96800 0.96810 0.93268 0.93279 0.75976 0.71260 0.70512 0.77468 0.77531 0.79786 0.79148 0.73024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.10 13.29 21.45 0.28 -50.81 16 2 C 0.01 0.58 5.46 84.65 0.46 1.04 16 3 Si 0.96 41.85 29.54 68.60 2.03 43.88 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.55 -28.87 9.11 25.60 0.23 -28.63 16 8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.02 1.09 5.09 29.85 0.15 1.24 16 10 C 0.16 6.12 5.61 86.38 0.48 6.61 16 11 N -0.72 -22.07 5.52 -478.57 -2.64 -24.71 16 12 C 0.71 22.54 8.68 179.05 1.55 24.10 16 13 O -0.62 -25.18 17.18 -3.97 -0.07 -25.25 16 14 N -0.52 -12.56 6.30 -184.75 -1.16 -13.72 16 15 N -0.50 -8.14 6.43 -55.05 -0.35 -8.50 16 16 C 0.33 5.09 7.69 133.10 1.02 6.12 16 17 C -0.12 -0.82 10.05 22.63 0.23 -0.60 16 18 C -0.07 -0.45 9.59 22.60 0.22 -0.23 16 19 C 0.22 3.38 7.58 132.84 1.01 4.39 16 20 N -0.41 -6.16 2.99 -355.32 -1.06 -7.22 16 21 C -0.05 -0.76 11.20 83.04 0.93 0.17 16 22 C -0.04 -0.62 11.85 83.52 0.99 0.37 16 23 N -0.51 -9.34 11.24 -199.70 -2.25 -11.58 16 24 C 0.20 2.43 11.92 179.99 2.15 4.58 16 25 N -0.24 -5.06 11.06 -54.64 -0.60 -5.67 16 26 N -0.31 -6.74 10.54 -55.01 -0.58 -7.32 16 27 H 0.27 13.92 8.31 -92.71 -0.77 13.14 16 28 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.40 9.49 6.39 -92.71 -0.59 8.90 16 33 H 0.44 10.90 8.08 -213.32 -1.72 9.18 16 34 H 0.45 5.09 6.71 -213.32 -1.43 3.66 16 35 H 0.21 -0.36 8.06 -2.91 -0.02 -0.38 16 36 H 0.21 -0.63 6.88 -2.91 -0.02 -0.65 16 37 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.25 0.38 7.13 -2.91 -0.02 0.36 16 Total: -1.00 -77.50 347.20 0.41 -77.09 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -2.61 Total: 14.66 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 9.42 Total: 19.15 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -8.36 Total: -129.53 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.07 Total: -25.25 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -77.50 0.41 -77.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286772279.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.575 kcal (2) G-P(sol) polarization free energy of solvation -77.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds