Wall clock time and date at job start Tue Mar 31 2020 11:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86794 * 120.00001 * 2 1 4 4 H 1.48499 * 109.47316 * 273.05965 * 3 2 1 5 5 H 1.48500 * 109.47361 * 33.06102 * 3 2 1 6 6 H 1.48499 * 109.47335 * 153.06035 * 3 2 1 7 7 C 1.38890 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00075 * 340.62837 * 7 2 1 9 9 N 1.37139 * 119.99845 * 160.62224 * 7 2 1 10 10 C 1.34782 * 119.99697 * 123.76579 * 9 7 2 11 11 O 1.21281 * 119.99864 * 185.92742 * 10 9 7 12 12 C 1.50702 * 120.00217 * 5.93129 * 10 9 7 13 13 H 1.09001 * 109.85672 * 310.52479 * 12 10 9 14 14 O 1.43348 * 109.86413 * 189.41040 * 12 10 9 15 15 C 1.43983 * 109.97841 * 240.53116 * 14 12 10 16 16 C 1.53991 * 104.53525 * 336.38128 * 15 14 12 17 17 H 1.09003 * 109.50864 * 281.35720 * 16 15 14 18 18 C 1.50951 * 112.60303 * 159.01834 * 16 15 14 19 19 O 1.42686 * 111.79090 * 293.72307 * 18 16 15 20 20 C 1.43265 * 112.51556 * 299.91777 * 19 18 16 21 21 C 1.52713 * 108.26338 * 65.61330 * 20 19 18 22 22 C 1.53123 * 110.61833 * 299.80240 * 21 20 19 23 23 H 1.08999 * 112.79885 * 283.34447 * 22 21 20 24 24 C 1.39779 * 120.00400 * 303.76615 * 9 7 2 25 25 C 1.38962 * 120.08323 * 186.19799 * 24 9 7 26 26 C 1.38082 * 119.92440 * 179.74804 * 25 24 9 27 27 C 1.38307 * 120.07606 * 0.55025 * 26 25 24 28 28 C 1.38304 * 120.15786 * 359.70036 * 27 26 25 29 29 C 1.38085 * 120.07632 * 0.02562 * 28 27 26 30 30 H 0.96999 * 120.00356 * 0.02562 * 1 2 3 31 31 H 1.08994 * 110.42523 * 217.61559 * 15 14 12 32 32 H 1.09001 * 110.52506 * 95.19247 * 15 14 12 33 33 H 1.08998 * 109.01772 * 54.31555 * 18 16 15 34 34 H 1.09004 * 109.02331 * 173.12546 * 18 16 15 35 35 H 1.09003 * 109.69985 * 185.29689 * 20 19 18 36 36 H 1.08995 * 109.70895 * 305.91564 * 20 19 18 37 37 H 1.09003 * 109.24522 * 179.51565 * 21 20 19 38 38 H 1.08999 * 109.25481 * 60.09735 * 21 20 19 39 39 H 1.08004 * 120.03320 * 359.97438 * 25 24 9 40 40 H 1.07999 * 119.96370 * 180.29253 * 26 25 24 41 41 H 1.08001 * 119.92335 * 179.72502 * 27 26 25 42 42 H 1.08001 * 119.96026 * 180.02562 * 28 27 26 43 43 H 1.08003 * 120.03560 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4310 2.0838 -1.3980 5 1 1.4795 2.6331 0.7638 6 1 3.5766 1.4223 0.6343 7 6 2.0087 -1.2028 0.0005 8 1 1.5145 -2.1115 0.3112 9 7 3.3218 -1.2366 -0.3935 10 6 4.2618 -1.7313 0.4361 11 8 5.4342 -1.6633 0.1334 12 6 3.8560 -2.3691 1.7398 13 1 3.1676 -1.7141 2.2739 14 8 5.0172 -2.6182 2.5425 15 6 5.1388 -4.0282 2.8076 16 6 3.7080 -4.5756 2.6512 17 1 3.1318 -4.3499 3.5485 18 6 3.6809 -6.0620 2.3895 19 8 4.2542 -6.3876 1.1241 20 6 3.5636 -5.7672 0.0329 21 6 3.7503 -4.2558 0.1457 22 6 3.1774 -3.7389 1.4684 23 1 2.0895 -3.6730 1.4604 24 6 3.6854 -0.7580 -1.6555 25 6 4.9907 -0.9082 -2.1079 26 6 5.3450 -0.4388 -3.3572 27 6 4.4054 0.1905 -4.1534 28 6 3.1066 0.3464 -3.7043 29 6 2.7438 -0.1256 -2.4583 30 1 -0.4850 0.8400 -0.0004 31 1 5.5010 -4.1947 3.8220 32 1 5.8064 -4.4968 2.0845 33 1 4.2402 -6.5711 3.1743 34 1 2.6473 -6.4077 2.4106 35 1 3.9779 -6.1192 -0.9119 36 1 2.5025 -6.0113 0.0832 37 1 3.2374 -3.7676 -0.6831 38 1 4.8135 -4.0204 0.0983 39 1 5.7262 -1.3948 -1.4845 40 1 6.3582 -0.5594 -3.7113 41 1 4.6863 0.5606 -5.1283 42 1 2.3753 0.8379 -4.3288 43 1 1.7293 -0.0039 -2.1084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291265199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:55 Heat of formation + Delta-G solvation = -66.695421 kcal Electronic energy + Delta-G solvation = -28582.460616 eV Core-core repulsion = 24786.815671 eV Total energy + Delta-G solvation = -3795.644945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.04503 -39.54830 -37.75591 -36.91260 -35.17995 -32.93303 -32.31269 -31.74497 -30.07070 -29.63052 -27.94980 -25.36888 -25.31255 -23.45801 -23.15060 -21.82203 -21.03688 -19.45606 -19.18661 -18.14924 -17.00136 -16.37940 -16.00431 -15.92722 -15.70921 -15.38898 -15.09284 -14.63894 -14.49007 -13.99514 -13.84551 -13.48913 -13.31911 -12.98505 -12.96238 -12.66114 -12.53351 -12.30075 -12.10640 -11.84024 -11.70177 -11.43217 -11.30062 -11.04549 -10.88571 -10.71745 -10.40026 -10.28187 -10.12371 -10.09022 -9.70869 -9.55438 -9.29048 -8.90725 -8.27319 -8.07501 -7.04525 -6.68122 -4.57944 2.05086 2.19272 3.06774 3.17802 3.28685 3.41557 3.78944 3.94853 4.02767 4.30280 4.45000 4.54628 4.79481 4.82619 5.00387 5.09994 5.15735 5.38961 5.42870 5.52901 5.58914 5.61187 5.62265 5.69409 5.73173 5.83776 5.88917 5.91921 5.98571 6.12729 6.17064 6.31339 6.33875 6.41186 6.53750 6.56891 6.81865 7.14332 7.16316 7.18256 7.29437 7.31710 7.37626 7.67668 7.93771 8.14046 8.71342 9.02323 9.32600 10.33867 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.005884 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.267218 B = 4757.620280 C = 5426.240133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.091 3.909 3 Si 0.856 3.144 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.406 5.406 10 C 0.495 3.505 11 O -0.543 6.543 12 C 0.083 3.917 13 H 0.112 0.888 14 O -0.360 6.360 15 C 0.061 3.939 16 C -0.159 4.159 17 H 0.093 0.907 18 C 0.075 3.925 19 O -0.378 6.378 20 C 0.063 3.937 21 C -0.163 4.163 22 C -0.091 4.091 23 H 0.111 0.889 24 C 0.160 3.840 25 C -0.183 4.183 26 C -0.111 4.111 27 C -0.169 4.169 28 C -0.109 4.109 29 C -0.150 4.150 30 H 0.280 0.720 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.173 0.827 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -7.604 1.466 8.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.120 4.120 3 Si 0.680 3.320 4 H -0.178 1.178 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.505 4.505 8 H 0.127 0.873 9 N -0.118 5.118 10 C 0.287 3.713 11 O -0.425 6.425 12 C 0.022 3.978 13 H 0.130 0.870 14 O -0.278 6.278 15 C -0.016 4.016 16 C -0.178 4.178 17 H 0.112 0.888 18 C -0.002 4.002 19 O -0.297 6.297 20 C -0.014 4.014 21 C -0.200 4.200 22 C -0.110 4.110 23 H 0.129 0.871 24 C 0.063 3.937 25 C -0.203 4.203 26 C -0.129 4.129 27 C -0.188 4.188 28 C -0.128 4.128 29 C -0.170 4.170 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.189 0.811 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.740 -7.465 1.487 8.481 hybrid contribution -0.375 1.218 -0.099 1.278 sum 3.366 -6.246 1.388 7.230 Atomic orbital electron populations 1.69754 1.06240 1.28855 1.42900 1.25438 0.95013 0.98787 0.92737 0.87196 0.81205 0.83276 0.80275 1.17818 1.20799 1.18563 1.18963 0.84209 0.96714 1.50604 0.87322 1.41297 1.08152 1.52833 1.09470 1.21024 0.85071 0.79747 0.85484 1.90274 1.18838 1.59224 1.74132 1.22660 0.87125 0.97072 0.90936 0.87016 1.88534 1.46191 1.23228 1.69815 1.23222 0.95606 0.81867 1.00907 1.22750 0.98340 0.96911 0.99833 0.88849 1.21805 0.98742 0.93082 0.86581 1.88098 1.56396 1.70717 1.14453 1.22586 0.96602 0.92138 0.90057 1.22359 1.03161 0.96537 0.97972 1.22521 1.01527 0.92495 0.94430 0.87059 1.18507 0.93416 0.95543 0.86201 1.22587 0.97138 1.03223 0.97329 1.20973 0.98542 0.98973 0.94461 1.20905 0.94077 1.04010 0.99857 1.20828 0.96023 1.00166 0.95760 1.21273 1.00892 1.00231 0.94629 0.90966 0.89899 0.91564 0.88896 0.92855 0.88839 0.92762 0.89527 0.90098 0.81057 0.87073 0.87474 0.87002 0.84054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.42 13.96 55.49 0.77 -20.64 16 2 C 0.09 2.25 3.71 -17.49 -0.06 2.19 16 3 Si 0.86 20.26 25.21 -169.99 -4.29 15.98 16 4 H -0.25 -5.93 6.30 56.52 0.36 -5.58 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.26 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.38 -9.05 7.71 -14.94 -0.12 -9.16 16 8 H 0.11 2.61 6.36 -52.48 -0.33 2.27 16 9 N -0.41 -9.44 1.54 -58.98 -0.09 -9.53 16 10 C 0.50 11.18 4.69 -10.98 -0.05 11.12 16 11 O -0.54 -13.17 12.53 -13.90 -0.17 -13.35 16 12 C 0.08 1.61 2.99 -26.69 -0.08 1.53 16 13 H 0.11 2.22 7.67 -51.93 -0.40 1.82 16 14 O -0.36 -6.93 10.60 -54.69 -0.58 -7.51 16 15 C 0.06 0.90 6.78 37.67 0.26 1.16 16 16 C -0.16 -2.09 3.02 -90.45 -0.27 -2.37 16 17 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 18 C 0.08 0.86 6.17 36.13 0.22 1.08 16 19 O -0.38 -5.25 10.58 -35.23 -0.37 -5.63 16 20 C 0.06 0.86 6.82 37.01 0.25 1.11 16 21 C -0.16 -2.69 3.95 -26.81 -0.11 -2.79 16 22 C -0.09 -1.46 2.84 -88.68 -0.25 -1.71 16 23 H 0.11 1.77 7.07 -51.93 -0.37 1.40 16 24 C 0.16 3.70 5.34 -83.70 -0.45 3.26 16 25 C -0.18 -4.01 8.99 -39.37 -0.35 -4.36 16 26 C -0.11 -2.10 10.04 -39.61 -0.40 -2.50 16 27 C -0.17 -3.06 10.04 -39.53 -0.40 -3.46 16 28 C -0.11 -2.13 10.04 -39.61 -0.40 -2.53 16 29 C -0.15 -3.36 6.42 -39.37 -0.25 -3.61 16 30 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.05 7.49 -51.93 -0.39 0.66 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.55 8.13 -51.93 -0.42 0.12 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 37 H 0.09 1.60 7.36 -51.93 -0.38 1.21 16 38 H 0.08 1.52 6.16 -51.93 -0.32 1.20 16 39 H 0.17 3.93 4.67 -55.50 -0.26 3.67 16 40 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 43 H 0.14 3.37 4.91 -52.48 -0.26 3.11 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -28.26 327.46 -7.94 -36.20 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.69 Total: 10.59 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -2.46 Total: -11.04 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.68 Total: -30.17 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -1.13 Total: -26.49 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.29 Total: 15.98 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.26 -7.94 -36.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291265199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.499 kcal (2) G-P(sol) polarization free energy of solvation -28.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds