Wall clock time and date at job start Tue Mar 31 2020 11:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86794 * 120.00001 * 2 1 4 4 H 1.48499 * 109.47316 * 273.05965 * 3 2 1 5 5 H 1.48500 * 109.47361 * 33.06102 * 3 2 1 6 6 H 1.48499 * 109.47335 * 153.06035 * 3 2 1 7 7 C 1.38890 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00075 * 340.62837 * 7 2 1 9 9 N 1.37139 * 119.99845 * 160.62224 * 7 2 1 10 10 C 1.34782 * 119.99697 * 123.76579 * 9 7 2 11 11 O 1.21281 * 119.99864 * 185.92742 * 10 9 7 12 12 C 1.50702 * 120.00217 * 5.93129 * 10 9 7 13 13 H 1.09001 * 109.85672 * 310.52479 * 12 10 9 14 14 O 1.43348 * 109.86413 * 189.41040 * 12 10 9 15 15 C 1.43983 * 109.97841 * 240.53116 * 14 12 10 16 16 C 1.53991 * 104.53525 * 336.38128 * 15 14 12 17 17 H 1.09003 * 109.50864 * 281.35720 * 16 15 14 18 18 C 1.50951 * 112.60303 * 159.01834 * 16 15 14 19 19 O 1.42686 * 111.79090 * 293.72307 * 18 16 15 20 20 C 1.43265 * 112.51556 * 299.91777 * 19 18 16 21 21 C 1.52713 * 108.26338 * 65.61330 * 20 19 18 22 22 C 1.53123 * 110.61833 * 299.80240 * 21 20 19 23 23 H 1.08999 * 112.79885 * 283.34447 * 22 21 20 24 24 C 1.39779 * 120.00400 * 303.76615 * 9 7 2 25 25 C 1.38962 * 120.08323 * 186.19799 * 24 9 7 26 26 C 1.38082 * 119.92440 * 179.74804 * 25 24 9 27 27 C 1.38307 * 120.07606 * 0.55025 * 26 25 24 28 28 C 1.38304 * 120.15786 * 359.70036 * 27 26 25 29 29 C 1.38085 * 120.07632 * 0.02562 * 28 27 26 30 30 H 0.96999 * 120.00356 * 0.02562 * 1 2 3 31 31 H 1.08994 * 110.42523 * 217.61559 * 15 14 12 32 32 H 1.09001 * 110.52506 * 95.19247 * 15 14 12 33 33 H 1.08998 * 109.01772 * 54.31555 * 18 16 15 34 34 H 1.09004 * 109.02331 * 173.12546 * 18 16 15 35 35 H 1.09003 * 109.69985 * 185.29689 * 20 19 18 36 36 H 1.08995 * 109.70895 * 305.91564 * 20 19 18 37 37 H 1.09003 * 109.24522 * 179.51565 * 21 20 19 38 38 H 1.08999 * 109.25481 * 60.09735 * 21 20 19 39 39 H 1.08004 * 120.03320 * 359.97438 * 25 24 9 40 40 H 1.07999 * 119.96370 * 180.29253 * 26 25 24 41 41 H 1.08001 * 119.92335 * 179.72502 * 27 26 25 42 42 H 1.08001 * 119.96026 * 180.02562 * 28 27 26 43 43 H 1.08003 * 120.03560 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4310 2.0838 -1.3980 5 1 1.4795 2.6331 0.7638 6 1 3.5766 1.4223 0.6343 7 6 2.0087 -1.2028 0.0005 8 1 1.5145 -2.1115 0.3112 9 7 3.3218 -1.2366 -0.3935 10 6 4.2618 -1.7313 0.4361 11 8 5.4342 -1.6633 0.1334 12 6 3.8560 -2.3691 1.7398 13 1 3.1676 -1.7141 2.2739 14 8 5.0172 -2.6182 2.5425 15 6 5.1388 -4.0282 2.8076 16 6 3.7080 -4.5756 2.6512 17 1 3.1318 -4.3499 3.5485 18 6 3.6809 -6.0620 2.3895 19 8 4.2542 -6.3876 1.1241 20 6 3.5636 -5.7672 0.0329 21 6 3.7503 -4.2558 0.1457 22 6 3.1774 -3.7389 1.4684 23 1 2.0895 -3.6730 1.4604 24 6 3.6854 -0.7580 -1.6555 25 6 4.9907 -0.9082 -2.1079 26 6 5.3450 -0.4388 -3.3572 27 6 4.4054 0.1905 -4.1534 28 6 3.1066 0.3464 -3.7043 29 6 2.7438 -0.1256 -2.4583 30 1 -0.4850 0.8400 -0.0004 31 1 5.5010 -4.1947 3.8220 32 1 5.8064 -4.4968 2.0845 33 1 4.2402 -6.5711 3.1743 34 1 2.6473 -6.4077 2.4106 35 1 3.9779 -6.1192 -0.9119 36 1 2.5025 -6.0113 0.0832 37 1 3.2374 -3.7676 -0.6831 38 1 4.8135 -4.0204 0.0983 39 1 5.7262 -1.3948 -1.4845 40 1 6.3582 -0.5594 -3.7113 41 1 4.6863 0.5606 -5.1283 42 1 2.3753 0.8379 -4.3288 43 1 1.7293 -0.0039 -2.1084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291265199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:54 Heat of formation + Delta-G solvation = -83.230696 kcal Electronic energy + Delta-G solvation = -28583.177639 eV Core-core repulsion = 24786.815671 eV Total energy + Delta-G solvation = -3796.361968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.51659 -41.03446 -39.18137 -38.33891 -36.96291 -34.35240 -34.09638 -32.90363 -31.68091 -31.15097 -29.40160 -27.17804 -26.42955 -24.85930 -24.41256 -23.42361 -22.61871 -21.04498 -20.56573 -19.82228 -18.42588 -17.79750 -17.51164 -17.38614 -17.21390 -16.87706 -16.23238 -16.15023 -15.96075 -15.67184 -15.40322 -14.98202 -14.72954 -14.67137 -14.49316 -14.15704 -14.07754 -13.78178 -13.64582 -13.15997 -13.06500 -13.00964 -12.83417 -12.61970 -12.49667 -12.17874 -12.04591 -11.82898 -11.56046 -11.37382 -11.18510 -10.99280 -10.74068 -10.51559 -9.97105 -9.69905 -8.81865 -8.56544 -6.48964 0.43023 0.56549 1.16236 1.23708 1.33827 1.72225 2.08703 2.21961 2.67769 2.93503 2.96157 3.10363 3.24615 3.59144 3.64271 3.93317 3.99994 4.04545 4.18450 4.19093 4.21788 4.35879 4.40275 4.47357 4.52678 4.64303 4.67122 4.68500 4.69694 4.78033 4.80710 4.84410 4.89745 5.00109 5.08946 5.20571 5.24154 5.46185 5.60539 5.67915 5.72942 5.87304 5.98291 6.06614 6.15466 6.40138 6.82818 7.21445 7.53422 8.44035 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.005884 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.267218 B = 4757.620280 C = 5426.240133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.075 3.925 3 Si 0.889 3.111 4 H -0.248 1.248 5 H -0.273 1.273 6 H -0.293 1.293 7 C -0.368 4.368 8 H 0.103 0.897 9 N -0.413 5.413 10 C 0.487 3.513 11 O -0.569 6.569 12 C 0.081 3.919 13 H 0.102 0.898 14 O -0.385 6.385 15 C 0.053 3.947 16 C -0.146 4.146 17 H 0.117 0.883 18 C 0.071 3.929 19 O -0.390 6.390 20 C 0.069 3.931 21 C -0.153 4.153 22 C -0.087 4.087 23 H 0.113 0.887 24 C 0.130 3.870 25 C -0.203 4.203 26 C -0.107 4.107 27 C -0.155 4.155 28 C -0.110 4.110 29 C -0.172 4.172 30 H 0.285 0.715 31 H 0.116 0.884 32 H 0.051 0.949 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.157 0.843 40 H 0.144 0.856 41 H 0.152 0.848 42 H 0.141 0.859 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.122 -8.445 0.920 9.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.134 4.134 3 Si 0.715 3.285 4 H -0.173 1.173 5 H -0.198 1.198 6 H -0.219 1.219 7 C -0.495 4.495 8 H 0.121 0.879 9 N -0.125 5.125 10 C 0.280 3.720 11 O -0.452 6.452 12 C 0.021 3.979 13 H 0.120 0.880 14 O -0.303 6.303 15 C -0.022 4.022 16 C -0.164 4.164 17 H 0.135 0.865 18 C -0.005 4.005 19 O -0.308 6.308 20 C -0.007 4.007 21 C -0.191 4.191 22 C -0.106 4.106 23 H 0.131 0.869 24 C 0.034 3.966 25 C -0.223 4.223 26 C -0.125 4.125 27 C -0.174 4.174 28 C -0.128 4.128 29 C -0.192 4.192 30 H 0.095 0.905 31 H 0.134 0.866 32 H 0.070 0.930 33 H 0.140 0.860 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.173 0.827 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.159 0.841 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.774 -8.303 0.932 9.168 hybrid contribution -0.273 1.478 0.002 1.503 sum 3.502 -6.825 0.934 7.728 Atomic orbital electron populations 1.69761 1.06598 1.29424 1.44475 1.25638 0.95185 0.99685 0.92902 0.86733 0.79036 0.82611 0.80155 1.17254 1.19837 1.21909 1.18919 0.84505 0.96366 1.49676 0.87916 1.41351 1.07902 1.53220 1.09993 1.21598 0.84729 0.79286 0.86367 1.90252 1.19718 1.60236 1.75018 1.22642 0.87411 0.98639 0.89256 0.88028 1.88500 1.46187 1.26130 1.69491 1.23483 0.96777 0.79732 1.02228 1.22772 0.96884 0.97680 0.99112 0.86496 1.22067 1.00540 0.91719 0.86212 1.88093 1.57013 1.70449 1.15273 1.22548 0.97750 0.89664 0.90753 1.22194 1.00735 0.98784 0.97339 1.22523 1.01271 0.91156 0.95609 0.86864 1.18793 0.94374 0.96822 0.86567 1.22577 0.96445 1.04453 0.98843 1.21366 1.00435 0.97580 0.93117 1.21364 0.92879 1.02011 1.01155 1.21237 0.97568 0.99240 0.94780 1.21275 0.99949 1.01827 0.96193 0.90477 0.86649 0.93026 0.86035 0.90736 0.88112 0.90990 0.92238 0.93041 0.82662 0.83848 0.83032 0.84134 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -44.52 13.96 21.65 0.30 -44.22 16 2 C 0.07 3.77 3.71 84.91 0.31 4.08 16 3 Si 0.89 42.53 25.21 68.60 1.73 44.26 16 4 H -0.25 -11.53 6.30 99.48 0.63 -10.90 16 5 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.29 -15.45 7.11 99.48 0.71 -14.75 16 7 C -0.37 -18.21 7.71 84.02 0.65 -17.56 16 8 H 0.10 5.11 6.36 -2.91 -0.02 5.09 16 9 N -0.41 -20.03 1.54 -458.89 -0.70 -20.73 16 10 C 0.49 23.14 4.69 87.66 0.41 23.55 16 11 O -0.57 -29.17 12.53 15.57 0.20 -28.98 16 12 C 0.08 3.28 2.99 30.62 0.09 3.37 16 13 H 0.10 4.23 7.67 -2.39 -0.02 4.21 16 14 O -0.38 -15.13 10.60 -130.38 -1.38 -16.51 16 15 C 0.05 1.54 6.78 72.32 0.49 2.03 16 16 C -0.15 -3.55 3.02 -10.69 -0.03 -3.58 16 17 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 18 C 0.07 1.41 6.17 71.32 0.44 1.85 16 19 O -0.39 -10.06 10.58 -148.98 -1.58 -11.64 16 20 C 0.07 1.83 6.82 71.89 0.49 2.32 16 21 C -0.15 -5.19 3.95 30.54 0.12 -5.07 16 22 C -0.09 -2.80 2.84 -9.54 -0.03 -2.83 16 23 H 0.11 3.60 7.07 -2.39 -0.02 3.58 16 24 C 0.13 6.20 5.34 38.22 0.20 6.40 16 25 C -0.20 -9.06 8.99 22.41 0.20 -8.85 16 26 C -0.11 -3.84 10.04 22.25 0.22 -3.62 16 27 C -0.16 -5.09 10.04 22.30 0.22 -4.87 16 28 C -0.11 -4.06 10.04 22.25 0.22 -3.84 16 29 C -0.17 -7.74 6.42 22.41 0.14 -7.59 16 30 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 31 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.05 1.63 7.49 -2.39 -0.02 1.61 16 33 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 35 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.07 1.66 8.11 -2.39 -0.02 1.64 16 37 H 0.06 2.31 7.36 -2.39 -0.02 2.30 16 38 H 0.05 2.04 6.16 -2.39 -0.01 2.03 16 39 H 0.16 7.45 4.67 -50.74 -0.24 7.22 16 40 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 41 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 42 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 43 H 0.12 5.95 4.91 -2.91 -0.01 5.94 16 Total: -1.00 -63.98 327.46 3.46 -60.52 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.73 Total: 31.50 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 4.17 Total: -14.19 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -0.40 Total: -64.95 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -2.76 Total: -57.13 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.73 Total: 44.26 kcal Total: -63.98 3.46 -60.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291265199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.712 kcal (2) G-P(sol) polarization free energy of solvation -63.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds