Wall clock time and date at job start Tue Mar 31 2020 10:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48503 * 109.46572 * 269.99868 * 3 2 1 5 5 H 1.48499 * 109.47257 * 29.99398 * 3 2 1 6 6 H 1.48499 * 109.47169 * 150.00332 * 3 2 1 7 7 C 1.37868 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00489 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47493 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47460 * 180.02562 * 10 9 7 12 12 O 1.20833 * 119.99839 * 359.97438 * 11 10 9 13 13 O 1.34295 * 120.00456 * 180.02562 * 11 10 9 14 14 C 1.35768 * 117.00482 * 175.00628 * 13 11 10 15 15 C 1.38972 * 119.91149 * 75.20123 * 14 13 11 16 16 C 1.37725 * 120.09038 * 180.02562 * 15 14 13 17 17 C 1.39719 * 119.91069 * 359.97398 * 16 15 14 18 18 C 1.47648 * 120.08728 * 179.97438 * 17 16 15 19 19 O 1.21575 * 119.99848 * 8.10416 * 18 17 16 20 20 N 1.34774 * 119.99905 * 188.10320 * 18 17 16 21 21 C 1.47026 * 125.64657 * 354.91071 * 20 18 17 22 22 C 1.54327 * 107.40076 * 178.97766 * 21 20 18 23 23 C 1.55158 * 102.94184 * 337.73201 * 22 21 20 24 24 C 1.47732 * 125.82144 * 174.80654 * 20 18 17 25 25 C 1.39713 * 119.82245 * 0.25815 * 17 16 15 26 26 C 1.37735 * 119.90763 * 359.48914 * 25 17 16 27 27 H 0.96998 * 120.00282 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46921 * 60.00452 * 9 7 2 29 29 H 1.08996 * 109.47226 * 300.00233 * 9 7 2 30 30 H 1.09000 * 109.47211 * 60.00234 * 10 9 7 31 31 H 1.08996 * 109.47022 * 300.00293 * 10 9 7 32 32 H 1.08000 * 119.95434 * 0.02562 * 15 14 13 33 33 H 1.08004 * 120.04911 * 180.02562 * 16 15 14 34 34 H 1.08998 * 109.88392 * 59.48470 * 21 20 18 35 35 H 1.08995 * 109.88358 * 298.47349 * 21 20 18 36 36 H 1.09005 * 110.71821 * 96.09353 * 22 21 20 37 37 H 1.08996 * 110.71925 * 219.36669 * 22 21 20 38 38 H 1.09000 * 111.00403 * 153.57103 * 23 22 21 39 39 H 1.08996 * 111.00118 * 277.42466 * 23 22 21 40 40 H 1.08999 * 110.29233 * 85.25956 * 24 20 18 41 41 H 1.09007 * 110.47105 * 323.03117 * 24 20 18 42 42 H 1.07999 * 120.04424 * 179.72276 * 25 17 16 43 43 H 1.08002 * 119.95509 * 180.25349 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4920 -4.9671 0.0033 12 8 0.2837 -4.9672 0.0033 13 8 2.1635 -6.1302 0.0047 14 6 1.4281 -7.2665 0.1104 15 6 0.7081 -7.7303 -0.9840 16 6 -0.0396 -8.8823 -0.8808 17 6 -0.0733 -9.5852 0.3263 18 6 -0.8740 -10.8203 0.4415 19 8 -1.3849 -11.3080 -0.5480 20 7 -1.0385 -11.4071 1.6436 21 6 -0.3945 -10.9877 2.8971 22 6 -0.8962 -11.9301 4.0115 23 6 -2.2304 -12.4720 3.4338 24 6 -1.8961 -12.5766 1.9248 25 6 0.6481 -9.1129 1.4257 26 6 1.3975 -7.9629 1.3127 27 1 -0.4850 0.8400 -0.0004 28 1 0.6242 -2.5575 -0.8881 29 1 0.6248 -2.5563 0.8919 30 1 2.8720 -3.6035 0.8927 31 1 2.8721 -3.6050 -0.8872 32 1 0.7350 -7.1867 -1.9168 33 1 -0.5986 -9.2424 -1.7319 34 1 -0.6702 -9.9591 3.1294 35 1 0.6883 -11.0688 2.8027 36 1 -0.1890 -12.7430 4.1765 37 1 -1.0718 -11.3770 4.9341 38 1 -2.4673 -13.4511 3.8502 39 1 -3.0449 -11.7684 3.6057 40 1 -1.3552 -13.5003 1.7192 41 1 -2.8087 -12.5319 1.3302 42 1 0.6210 -9.6510 2.3617 43 1 1.9587 -7.5994 2.1608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291695054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:55 Heat of formation + Delta-G solvation = -89.539608 kcal Electronic energy + Delta-G solvation = -25286.455871 eV Core-core repulsion = 21489.820328 eV Total energy + Delta-G solvation = -3796.635543 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.50091 -41.51807 -39.52199 -38.49653 -37.84830 -35.67978 -33.46867 -33.12800 -32.23695 -31.46048 -29.86688 -28.22644 -26.15261 -24.71183 -24.15829 -23.17450 -22.09758 -21.62737 -21.06504 -19.45021 -18.70440 -18.67298 -17.85753 -17.60616 -17.41740 -17.05482 -16.50216 -15.99678 -15.71328 -15.63644 -15.15461 -14.80611 -14.65144 -14.55457 -14.33595 -14.22081 -14.09012 -13.83962 -13.45846 -13.27781 -13.14996 -13.03538 -12.83033 -12.51536 -12.18882 -12.15109 -12.02011 -11.81778 -11.66583 -11.59988 -11.47129 -11.32218 -11.17571 -10.58353 -10.25558 -10.05345 -9.73069 -8.20454 -6.34306 -0.58238 0.14551 1.04569 1.33631 1.44798 1.46159 1.57373 1.76746 1.90479 2.42994 2.64816 3.13799 3.27171 3.50978 3.61155 3.65987 3.78581 3.83764 4.04145 4.09446 4.20625 4.24274 4.29911 4.41953 4.44556 4.52174 4.57149 4.75748 4.79470 4.82483 4.92281 4.94796 4.97115 5.05515 5.10982 5.14269 5.22727 5.25259 5.36759 5.45940 5.52842 5.65581 5.79591 6.11698 6.28510 6.73866 6.84774 6.90860 7.36276 8.92092 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026682 B = 0.002167 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.147654 B =12919.458280 C =13209.359207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.254 1.254 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.037 3.963 10 C -0.090 4.090 11 C 0.465 3.535 12 O -0.524 6.524 13 O -0.294 6.294 14 C 0.087 3.913 15 C -0.143 4.143 16 C -0.055 4.055 17 C -0.147 4.147 18 C 0.571 3.429 19 O -0.581 6.581 20 N -0.613 5.613 21 C 0.069 3.931 22 C -0.125 4.125 23 C -0.127 4.127 24 C 0.096 3.904 25 C -0.094 4.094 26 C -0.126 4.126 27 H 0.264 0.736 28 H -0.011 1.011 29 H -0.008 1.008 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.203 0.797 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -26.910 10.763 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.798 3.202 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.178 1.178 7 C -0.580 4.580 8 H 0.098 0.902 9 C 0.000 4.000 10 C -0.127 4.127 11 C 0.311 3.689 12 O -0.411 6.411 13 O -0.210 6.210 14 C 0.046 3.954 15 C -0.161 4.161 16 C -0.074 4.074 17 C -0.150 4.150 18 C 0.362 3.638 19 O -0.463 6.463 20 N -0.346 5.346 21 C -0.052 4.052 22 C -0.163 4.163 23 C -0.165 4.165 24 C -0.026 4.026 25 C -0.111 4.111 26 C -0.144 4.144 27 H 0.072 0.928 28 H 0.007 0.993 29 H 0.010 0.990 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.219 0.781 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.271 -27.051 10.183 28.993 hybrid contribution -0.341 1.087 -0.798 1.391 sum 1.930 -25.965 9.385 27.676 Atomic orbital electron populations 1.70158 1.08253 1.27943 1.51251 1.26099 0.95712 1.03897 0.94553 0.85313 0.78730 0.77703 0.78464 1.19888 1.21283 1.17768 1.21632 0.94210 0.91099 1.51078 0.90166 1.18826 0.93693 0.91886 0.95586 1.21599 0.99354 0.84755 1.06946 1.25129 0.87462 0.85647 0.70644 1.90683 1.17355 1.87402 1.45649 1.84653 1.39594 1.13143 1.83576 1.19320 0.94537 0.86525 0.95040 1.21389 0.97719 0.97707 0.99333 1.21134 0.95888 0.92763 0.97623 1.19999 1.02238 0.96796 0.95963 1.17979 0.80143 0.83530 0.82145 1.90753 1.51922 1.66143 1.37437 1.48525 1.46546 1.31773 1.07713 1.22945 0.98647 1.00454 0.83186 1.22751 0.96846 0.99390 0.97306 1.22808 0.98190 1.03739 0.91746 1.22533 0.94073 0.87913 0.98067 1.22982 0.92740 0.95034 1.00365 1.21520 1.00293 0.96541 0.96081 0.92777 0.99258 0.98957 0.85643 0.86128 0.85107 0.84386 0.89390 0.88218 0.88700 0.87690 0.87357 0.90724 0.90418 0.92019 0.78051 0.81660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.69 13.29 21.44 0.28 -57.40 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 43.04 29.54 68.60 2.03 45.07 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.54 -29.55 9.11 25.60 0.23 -29.31 16 8 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 9 C 0.04 1.97 4.26 29.85 0.13 2.10 16 10 C -0.09 -3.43 5.75 29.85 0.17 -3.26 16 11 C 0.47 17.92 7.82 71.23 0.56 18.47 16 12 O -0.52 -24.40 15.41 21.94 0.34 -24.06 16 13 O -0.29 -9.47 10.02 5.98 0.06 -9.41 16 14 C 0.09 2.62 5.20 22.62 0.12 2.73 16 15 C -0.14 -4.32 9.44 22.32 0.21 -4.11 16 16 C -0.06 -1.56 9.58 22.51 0.22 -1.35 16 17 C -0.15 -3.69 5.87 -20.08 -0.12 -3.81 16 18 C 0.57 14.81 7.80 86.73 0.68 15.48 16 19 O -0.58 -19.47 16.69 -3.95 -0.07 -19.54 16 20 N -0.61 -10.79 3.34 -827.60 -2.76 -13.55 16 21 C 0.07 0.61 4.86 86.73 0.42 1.03 16 22 C -0.13 -0.48 6.95 31.78 0.22 -0.26 16 23 C -0.13 -0.81 7.09 31.99 0.23 -0.59 16 24 C 0.10 1.31 6.91 86.80 0.60 1.91 16 25 C -0.09 -1.82 8.58 22.51 0.19 -1.62 16 26 C -0.13 -2.87 9.97 22.33 0.22 -2.64 16 27 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 28 H -0.01 -0.66 8.10 -2.39 -0.02 -0.68 16 29 H -0.01 -0.47 8.10 -2.39 -0.02 -0.49 16 30 H 0.13 4.12 8.14 -2.39 -0.02 4.10 16 31 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 32 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 33 H 0.14 3.87 7.67 -2.91 -0.02 3.85 16 34 H 0.09 0.75 6.67 -2.39 -0.02 0.73 16 35 H 0.10 0.58 6.78 -2.39 -0.02 0.56 16 36 H 0.09 0.14 8.14 -2.38 -0.02 0.12 16 37 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 1.07 8.10 -2.38 -0.02 1.05 16 42 H 0.20 2.21 2.76 -7.90 -0.02 2.19 16 43 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -79.57 361.58 5.43 -74.14 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.01 Total: 9.79 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 4.54 Total: -5.03 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -2.48 Total: -70.95 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: 0.33 Total: -53.01 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -79.57 5.43 -74.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291695054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.405 kcal (2) G-P(sol) polarization free energy of solvation -79.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds