Wall clock time and date at job start Tue Mar 31 2020 11:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99645 * 2 1 4 4 H 1.48498 * 109.47126 * 239.99714 * 3 2 1 5 5 H 1.48490 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46913 * 120.00081 * 3 2 1 7 7 C 1.38696 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00257 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.35520 * 116.99969 * 185.51258 * 9 7 2 11 11 C 1.38831 * 120.16446 * 5.86502 * 10 9 7 12 12 C 1.38022 * 120.07725 * 179.70220 * 11 10 9 13 13 C 1.38574 * 120.39643 * 0.55289 * 12 11 10 14 14 C 1.37823 * 120.32586 * 359.44377 * 13 12 11 15 15 C 1.39663 * 119.92124 * 0.27731 * 14 13 12 16 16 C 1.47528 * 120.20221 * 179.97438 * 15 14 13 17 17 O 1.21589 * 120.00628 * 234.09995 * 16 15 14 18 18 N 1.34780 * 120.00219 * 54.09515 * 16 15 14 19 19 C 1.45710 * 117.55622 * 355.48172 * 18 16 15 20 20 C 1.53439 * 109.32833 * 155.52281 * 19 18 16 21 21 O 1.43192 * 107.34131 * 51.73709 * 20 19 18 22 22 C 1.42339 * 113.84468 * 289.71553 * 21 20 19 23 23 H 1.09007 * 109.62434 * 291.08632 * 22 21 20 24 24 C 1.54198 * 108.95618 * 171.00237 * 22 21 20 25 25 C 1.54010 * 105.10834 * 265.29970 * 24 22 21 26 26 C 1.53794 * 105.83579 * 331.72723 * 25 24 22 27 27 C 1.44355 * 117.56667 * 175.74067 * 18 16 15 28 28 H 1.08997 * 107.66067 * 308.21429 * 27 18 16 29 29 H 0.97002 * 120.00281 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.95891 * 359.97438 * 11 10 9 31 31 H 1.07995 * 119.80626 * 180.29584 * 12 11 10 32 32 H 1.08004 * 119.83463 * 179.72087 * 13 12 11 33 33 H 1.08000 * 120.04471 * 180.29771 * 14 13 12 34 34 H 1.08993 * 109.47670 * 275.66887 * 19 18 16 35 35 H 1.09000 * 109.47660 * 35.68790 * 19 18 16 36 36 H 1.09001 * 110.04526 * 292.21728 * 20 19 18 37 37 H 1.09003 * 109.79968 * 171.12117 * 20 19 18 38 38 H 1.09000 * 110.31406 * 146.39590 * 24 22 21 39 39 H 1.08994 * 110.39967 * 24.24975 * 24 22 21 40 40 H 1.09002 * 110.17739 * 212.63962 * 25 24 22 41 41 H 1.08998 * 110.17884 * 90.82471 * 25 24 22 42 42 H 1.08994 * 109.99367 * 259.89258 * 26 25 24 43 43 H 1.09004 * 109.98782 * 138.57143 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0088 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3347 -2.3686 0.0005 10 6 2.0680 -3.5024 0.1171 11 6 3.4344 -3.4284 0.3515 12 6 4.1784 -4.5843 0.4760 13 6 3.5720 -5.8246 0.3571 14 6 2.2167 -5.9173 0.1245 15 6 1.4500 -4.7564 0.0020 16 6 -0.0012 -4.8484 -0.2476 17 8 -0.4938 -4.2636 -1.1930 18 7 -0.7809 -5.5807 0.5723 19 6 -0.1232 -6.3401 1.6277 20 6 -1.1160 -6.5847 2.7717 21 8 -2.2999 -7.1483 2.1961 22 6 -3.0503 -6.2301 1.4089 23 1 -3.4951 -5.4727 2.0544 24 6 -4.1618 -6.9988 0.6663 25 6 -3.5702 -7.3218 -0.7185 26 6 -2.5530 -6.2060 -1.0109 27 6 -2.2048 -5.5587 0.3359 28 1 -2.5159 -4.5152 0.2874 29 1 -0.4850 0.8400 -0.0004 30 1 3.9149 -2.4654 0.4408 31 1 5.2401 -4.5217 0.6630 32 1 4.1637 -6.7232 0.4516 33 1 1.7480 -6.8864 0.0374 34 1 0.2193 -7.2949 1.2289 35 1 0.7304 -5.7759 2.0034 36 1 -1.3565 -5.6431 3.2654 37 1 -0.6861 -7.2816 3.4911 38 1 -5.0492 -6.3743 0.5623 39 1 -4.4072 -7.9187 1.1968 40 1 -4.3568 -7.3205 -1.4730 41 1 -3.0704 -8.2902 -0.6972 42 1 -2.9939 -5.4650 -1.6775 43 1 -1.6562 -6.6287 -1.4640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299167727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:43 Heat of formation + Delta-G solvation = -69.927633 kcal Electronic energy + Delta-G solvation = -27599.696493 eV Core-core repulsion = 23803.911389 eV Total energy + Delta-G solvation = -3795.785104 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.72691 -39.22131 -37.77594 -36.47250 -35.84838 -34.50041 -32.39212 -30.75356 -29.62347 -29.02963 -28.19252 -27.09734 -25.44124 -23.25990 -22.99508 -21.62167 -20.75340 -20.20552 -18.67340 -18.08905 -17.28354 -17.11814 -16.46410 -16.00632 -15.55604 -14.96584 -14.78862 -14.59791 -14.26755 -14.13725 -13.90744 -13.84632 -13.65177 -13.27307 -12.91228 -12.72591 -12.48227 -12.06798 -11.77512 -11.74043 -11.41777 -11.30815 -11.22351 -11.15606 -11.02840 -10.90221 -10.78865 -10.64925 -10.49950 -10.33591 -9.76009 -9.60988 -9.01201 -8.90283 -8.27034 -8.20315 -7.37431 -6.51257 -4.10793 1.78556 2.25876 3.08926 3.10959 3.13514 3.22893 3.45211 3.78618 3.89899 4.43029 4.50566 4.59956 4.89114 4.90299 5.03870 5.05993 5.10987 5.23958 5.31546 5.40102 5.50584 5.54974 5.60564 5.65185 5.68250 5.71796 5.73827 5.88534 5.91423 5.97184 6.05108 6.10568 6.13195 6.36523 6.42028 6.52814 6.62431 6.91198 6.99531 7.01302 7.20063 7.22490 7.24308 7.64113 7.77663 7.90993 8.86160 8.91565 9.59247 10.64619 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.004613 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.974132 B = 6067.805604 C = 7218.035839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.044 3.956 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.398 4.398 8 H 0.094 0.906 9 O -0.150 6.150 10 C 0.187 3.813 11 C -0.234 4.234 12 C -0.055 4.055 13 C -0.223 4.223 14 C -0.044 4.044 15 C -0.217 4.217 16 C 0.572 3.428 17 O -0.513 6.513 18 N -0.603 5.603 19 C 0.082 3.918 20 C 0.048 3.952 21 O -0.374 6.374 22 C 0.089 3.911 23 H 0.067 0.933 24 C -0.114 4.114 25 C -0.120 4.120 26 C -0.123 4.123 27 C 0.124 3.876 28 H 0.078 0.922 29 H 0.272 0.728 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 -13.140 4.832 14.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.473 4.473 8 H 0.111 0.889 9 O -0.050 6.050 10 C 0.129 3.871 11 C -0.253 4.253 12 C -0.074 4.074 13 C -0.242 4.242 14 C -0.062 4.062 15 C -0.222 4.222 16 C 0.362 3.638 17 O -0.387 6.387 18 N -0.339 5.339 19 C -0.041 4.041 20 C -0.029 4.029 21 O -0.292 6.292 22 C 0.031 3.969 23 H 0.085 0.915 24 C -0.151 4.151 25 C -0.158 4.158 26 C -0.161 4.161 27 C 0.019 3.981 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.025 -12.752 4.327 13.802 hybrid contribution 0.793 1.136 0.038 1.386 sum -2.232 -11.616 4.365 12.608 Atomic orbital electron populations 1.70054 1.06058 1.28008 1.43819 1.25356 0.95832 0.98972 0.96121 0.85763 0.78759 0.79534 0.79290 1.19311 1.20158 1.19372 1.21354 0.91828 0.80720 1.53445 0.88885 1.84013 1.34194 1.11413 1.75423 1.19205 0.90093 0.86898 0.90896 1.21138 0.93809 0.99326 1.11021 1.20893 0.98570 0.92257 0.95641 1.20480 0.94516 0.96976 1.12226 1.20771 0.93833 0.95669 0.95960 1.18696 0.92753 0.92035 1.18706 1.18301 0.86411 0.77304 0.81812 1.90776 1.75068 1.43804 1.29003 1.46911 1.05387 1.48874 1.32737 1.22155 0.96514 0.96572 0.88886 1.23055 0.85412 0.99650 0.94741 1.87906 1.37388 1.37409 1.66503 1.22569 0.91505 0.91578 0.91290 0.91540 1.22241 0.96466 1.00828 0.95597 1.22104 0.98371 0.99064 0.96275 1.22331 0.99329 0.97619 0.96856 1.20950 0.81081 1.01144 0.94944 0.90442 0.91763 0.85043 0.87115 0.87127 0.86685 0.91507 0.88847 0.92127 0.87509 0.90180 0.90113 0.91488 0.91699 0.90723 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.14 13.67 55.48 0.76 -24.38 16 2 C 0.04 1.20 5.49 -17.51 -0.10 1.11 16 3 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.40 -11.13 9.44 30.90 0.29 -10.84 16 8 H 0.09 2.37 5.30 -52.49 -0.28 2.09 16 9 O -0.15 -4.37 8.96 -2.31 -0.02 -4.39 16 10 C 0.19 4.56 6.64 -38.60 -0.26 4.31 16 11 C -0.23 -4.93 9.12 -39.44 -0.36 -5.29 16 12 C -0.06 -0.95 10.03 -39.54 -0.40 -1.35 16 13 C -0.22 -3.59 10.02 -39.61 -0.40 -3.99 16 14 C -0.04 -0.76 7.83 -39.20 -0.31 -1.06 16 15 C -0.22 -4.70 4.60 -104.81 -0.48 -5.18 16 16 C 0.57 12.79 6.32 -12.47 -0.08 12.72 16 17 O -0.51 -13.55 15.65 2.18 0.03 -13.52 16 18 N -0.60 -10.88 2.89 -169.46 -0.49 -11.37 16 19 C 0.08 1.18 5.06 -4.24 -0.02 1.16 16 20 C 0.05 0.59 7.02 37.38 0.26 0.85 16 21 O -0.37 -5.04 10.29 -35.23 -0.36 -5.40 16 22 C 0.09 1.20 3.48 -26.50 -0.09 1.10 16 23 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 24 C -0.11 -1.25 6.56 -25.58 -0.17 -1.42 16 25 C -0.12 -1.41 6.81 -25.79 -0.18 -1.59 16 26 C -0.12 -1.89 5.49 -26.10 -0.14 -2.03 16 27 C 0.12 2.06 2.71 -69.25 -0.19 1.87 16 28 H 0.08 1.48 7.94 -51.93 -0.41 1.07 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.13 2.74 5.72 -52.48 -0.30 2.44 16 31 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.12 1.69 6.63 -52.49 -0.35 1.34 16 34 H 0.07 0.86 7.06 -51.93 -0.37 0.50 16 35 H 0.09 1.40 6.22 -51.93 -0.32 1.08 16 36 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 37 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.07 1.16 7.64 -51.93 -0.40 0.77 16 LS Contribution 344.89 15.07 5.20 5.20 Total: -1.00 -33.76 344.89 -8.29 -42.05 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.78 Total: 6.09 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -2.61 Total: -9.64 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.27 Total: -35.76 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.35 Total: -23.30 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.76 -8.29 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299167727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.878 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds