Wall clock time and date at job start Tue Mar 31 2020 11:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86801 * 119.99645 * 2 1 4 4 H 1.48498 * 109.47126 * 239.99714 * 3 2 1 5 5 H 1.48490 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46913 * 120.00081 * 3 2 1 7 7 C 1.38696 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00257 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.35520 * 116.99969 * 185.51258 * 9 7 2 11 11 C 1.38831 * 120.16446 * 5.86502 * 10 9 7 12 12 C 1.38022 * 120.07725 * 179.70220 * 11 10 9 13 13 C 1.38574 * 120.39643 * 0.55289 * 12 11 10 14 14 C 1.37823 * 120.32586 * 359.44377 * 13 12 11 15 15 C 1.39663 * 119.92124 * 0.27731 * 14 13 12 16 16 C 1.47528 * 120.20221 * 179.97438 * 15 14 13 17 17 O 1.21589 * 120.00628 * 234.09995 * 16 15 14 18 18 N 1.34780 * 120.00219 * 54.09515 * 16 15 14 19 19 C 1.45710 * 117.55622 * 355.48172 * 18 16 15 20 20 C 1.53439 * 109.32833 * 155.52281 * 19 18 16 21 21 O 1.43192 * 107.34131 * 51.73709 * 20 19 18 22 22 C 1.42339 * 113.84468 * 289.71553 * 21 20 19 23 23 H 1.09007 * 109.62434 * 291.08632 * 22 21 20 24 24 C 1.54198 * 108.95618 * 171.00237 * 22 21 20 25 25 C 1.54010 * 105.10834 * 265.29970 * 24 22 21 26 26 C 1.53794 * 105.83579 * 331.72723 * 25 24 22 27 27 C 1.44355 * 117.56667 * 175.74067 * 18 16 15 28 28 H 1.08997 * 107.66067 * 308.21429 * 27 18 16 29 29 H 0.97002 * 120.00281 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.95891 * 359.97438 * 11 10 9 31 31 H 1.07995 * 119.80626 * 180.29584 * 12 11 10 32 32 H 1.08004 * 119.83463 * 179.72087 * 13 12 11 33 33 H 1.08000 * 120.04471 * 180.29771 * 14 13 12 34 34 H 1.08993 * 109.47670 * 275.66887 * 19 18 16 35 35 H 1.09000 * 109.47660 * 35.68790 * 19 18 16 36 36 H 1.09001 * 110.04526 * 292.21728 * 20 19 18 37 37 H 1.09003 * 109.79968 * 171.12117 * 20 19 18 38 38 H 1.09000 * 110.31406 * 146.39590 * 24 22 21 39 39 H 1.08994 * 110.39967 * 24.24975 * 24 22 21 40 40 H 1.09002 * 110.17739 * 212.63962 * 25 24 22 41 41 H 1.08998 * 110.17884 * 90.82471 * 25 24 22 42 42 H 1.08994 * 109.99367 * 259.89258 * 26 25 24 43 43 H 1.09004 * 109.98782 * 138.57143 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0088 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3347 -2.3686 0.0005 10 6 2.0680 -3.5024 0.1171 11 6 3.4344 -3.4284 0.3515 12 6 4.1784 -4.5843 0.4760 13 6 3.5720 -5.8246 0.3571 14 6 2.2167 -5.9173 0.1245 15 6 1.4500 -4.7564 0.0020 16 6 -0.0012 -4.8484 -0.2476 17 8 -0.4938 -4.2636 -1.1930 18 7 -0.7809 -5.5807 0.5723 19 6 -0.1232 -6.3401 1.6277 20 6 -1.1160 -6.5847 2.7717 21 8 -2.2999 -7.1483 2.1961 22 6 -3.0503 -6.2301 1.4089 23 1 -3.4951 -5.4727 2.0544 24 6 -4.1618 -6.9988 0.6663 25 6 -3.5702 -7.3218 -0.7185 26 6 -2.5530 -6.2060 -1.0109 27 6 -2.2048 -5.5587 0.3359 28 1 -2.5159 -4.5152 0.2874 29 1 -0.4850 0.8400 -0.0004 30 1 3.9149 -2.4654 0.4408 31 1 5.2401 -4.5217 0.6630 32 1 4.1637 -6.7232 0.4516 33 1 1.7480 -6.8864 0.0374 34 1 0.2193 -7.2949 1.2289 35 1 0.7304 -5.7759 2.0034 36 1 -1.3565 -5.6431 3.2654 37 1 -0.6861 -7.2816 3.4911 38 1 -5.0492 -6.3743 0.5623 39 1 -4.4072 -7.9187 1.1968 40 1 -4.3568 -7.3205 -1.4730 41 1 -3.0704 -8.2902 -0.6972 42 1 -2.9939 -5.4650 -1.6775 43 1 -1.6562 -6.6287 -1.4640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299167727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:42 Heat of formation + Delta-G solvation = -93.282390 kcal Electronic energy + Delta-G solvation = -27600.709232 eV Core-core repulsion = 23803.911389 eV Total energy + Delta-G solvation = -3796.797843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.14458 -40.79501 -39.38240 -38.13718 -36.97462 -36.00032 -34.37627 -32.27102 -30.81803 -30.64052 -29.35379 -28.39514 -27.40474 -24.72276 -24.24935 -23.24811 -22.05844 -21.40798 -20.10156 -19.92648 -18.84842 -18.41789 -18.06136 -17.33885 -16.88729 -16.59566 -16.32782 -16.00109 -15.67304 -15.48473 -15.46103 -15.29856 -15.16572 -14.73206 -14.38609 -14.30274 -13.95381 -13.59573 -13.27190 -13.02779 -12.92324 -12.75194 -12.54435 -12.44355 -12.38159 -12.22332 -12.18246 -12.14027 -11.70837 -11.50456 -11.47152 -11.04559 -10.85446 -10.55334 -9.83111 -9.67593 -9.09393 -8.51587 -6.21567 0.20829 0.67245 1.30359 1.42887 1.48074 1.66543 1.92009 2.12975 2.71889 2.78175 3.11171 3.30713 3.38071 3.47885 3.66479 3.77625 3.90926 4.01109 4.13173 4.20283 4.24110 4.29592 4.41253 4.44295 4.50966 4.54158 4.58853 4.65988 4.69287 4.79331 4.91556 4.94729 4.97019 5.04329 5.09011 5.11067 5.14116 5.31923 5.47797 5.55377 5.64786 5.67164 5.91108 6.06279 6.12787 6.28013 6.90319 7.19501 7.71442 8.70549 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.004613 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.974132 B = 6067.805604 C = 7218.035839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.023 4.023 3 Si 1.022 2.978 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.420 4.420 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.145 3.855 11 C -0.248 4.248 12 C -0.044 4.044 13 C -0.188 4.188 14 C -0.037 4.037 15 C -0.231 4.231 16 C 0.560 3.440 17 O -0.574 6.574 18 N -0.596 5.596 19 C 0.073 3.927 20 C 0.050 3.950 21 O -0.371 6.371 22 C 0.091 3.909 23 H 0.069 0.931 24 C -0.105 4.105 25 C -0.109 4.109 26 C -0.120 4.120 27 C 0.116 3.884 28 H 0.033 0.967 29 H 0.272 0.728 30 H 0.125 0.875 31 H 0.156 0.844 32 H 0.166 0.834 33 H 0.150 0.850 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.149 0.851 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 -16.920 6.445 18.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.221 4.221 3 Si 0.841 3.159 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.174 1.174 7 C -0.495 4.495 8 H 0.124 0.876 9 O -0.119 6.119 10 C 0.092 3.908 11 C -0.267 4.267 12 C -0.062 4.062 13 C -0.207 4.207 14 C -0.056 4.056 15 C -0.235 4.235 16 C 0.351 3.649 17 O -0.452 6.452 18 N -0.329 5.329 19 C -0.049 4.049 20 C -0.026 4.026 21 O -0.289 6.289 22 C 0.033 3.967 23 H 0.087 0.913 24 C -0.142 4.142 25 C -0.147 4.147 26 C -0.159 4.159 27 C 0.012 3.988 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.143 0.857 31 H 0.174 0.826 32 H 0.183 0.817 33 H 0.167 0.833 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.167 0.833 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.774 -16.633 5.992 17.696 hybrid contribution 0.287 1.918 -0.428 1.986 sum -0.488 -14.715 5.564 15.739 Atomic orbital electron populations 1.70240 1.08399 1.28860 1.47802 1.26733 0.96767 1.03107 0.95479 0.84611 0.77359 0.73779 0.80191 1.18176 1.19800 1.17352 1.21896 0.92643 0.81331 1.53650 0.87561 1.83993 1.35962 1.12673 1.79310 1.19904 0.91780 0.86823 0.92302 1.21296 0.92701 1.00983 1.11709 1.21417 1.00498 0.91105 0.93209 1.21159 0.93923 0.98443 1.07147 1.21197 0.94492 0.95348 0.94518 1.19054 0.92863 0.92778 1.18827 1.18725 0.87400 0.77124 0.81674 1.90730 1.76177 1.46453 1.31887 1.46993 1.05767 1.47815 1.32347 1.22494 0.96903 0.96776 0.88682 1.23232 0.84585 1.00564 0.94233 1.87913 1.37598 1.37212 1.66168 1.22604 0.91433 0.92134 0.90556 0.91279 1.22278 0.95786 1.01625 0.94548 1.22063 0.97713 0.97467 0.97446 1.22248 0.99639 0.98399 0.95568 1.21131 0.80849 0.99421 0.97434 0.94873 0.91919 0.85730 0.82609 0.81699 0.83291 0.88840 0.89551 0.93057 0.83322 0.88563 0.87994 0.89494 0.90744 0.92815 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.27 13.67 21.62 0.30 -58.97 16 2 C -0.02 -1.34 5.49 84.85 0.47 -0.87 16 3 Si 1.02 43.92 29.55 68.60 2.03 45.95 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 7 C -0.42 -25.20 9.44 67.93 0.64 -24.56 16 8 H 0.11 5.72 5.30 -2.91 -0.02 5.71 16 9 O -0.21 -13.61 8.96 -17.08 -0.15 -13.76 16 10 C 0.15 7.45 6.64 22.91 0.15 7.60 16 11 C -0.25 -10.43 9.12 22.36 0.20 -10.22 16 12 C -0.04 -1.35 10.03 22.30 0.22 -1.12 16 13 C -0.19 -5.01 10.02 22.25 0.22 -4.79 16 14 C -0.04 -1.18 7.83 22.52 0.18 -1.00 16 15 C -0.23 -10.22 4.60 -19.99 -0.09 -10.31 16 16 C 0.56 26.72 6.32 86.69 0.55 27.27 16 17 O -0.57 -33.41 15.65 -1.03 -0.02 -33.42 16 18 N -0.60 -22.30 2.89 -808.30 -2.33 -24.63 16 19 C 0.07 1.99 5.06 86.68 0.44 2.43 16 20 C 0.05 1.11 7.02 72.13 0.51 1.62 16 21 O -0.37 -9.03 10.29 -148.98 -1.53 -10.56 16 22 C 0.09 2.40 3.48 30.74 0.11 2.50 16 23 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 24 C -0.11 -2.07 6.56 31.34 0.21 -1.86 16 25 C -0.11 -2.39 6.81 31.20 0.21 -2.18 16 26 C -0.12 -3.88 5.49 31.00 0.17 -3.71 16 27 C 0.12 4.10 2.71 45.27 0.12 4.22 16 28 H 0.03 1.43 7.94 -2.39 -0.02 1.41 16 29 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 30 H 0.12 5.31 5.72 -2.91 -0.02 5.29 16 31 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 32 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 33 H 0.15 3.70 6.63 -2.91 -0.02 3.68 16 34 H 0.09 2.07 7.06 -2.39 -0.02 2.05 16 35 H 0.09 2.48 6.22 -2.39 -0.01 2.46 16 36 H 0.05 1.24 8.09 -2.39 -0.02 1.22 16 37 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.10 1.66 8.04 -2.39 -0.02 1.64 16 40 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.05 1.75 7.64 -2.38 -0.02 1.73 16 Total: -1.00 -86.35 344.89 3.62 -82.73 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 1.03 Total: 27.67 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 4.31 Total: -15.00 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -2.04 Total: -83.60 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -1.70 Total: -57.74 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -86.35 3.62 -82.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299167727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.553 kcal (2) G-P(sol) polarization free energy of solvation -86.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds