Wall clock time and date at job start Tue Mar 31 2020 11:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86801 * 120.00160 * 2 1 4 4 H 1.48496 * 109.47210 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46741 * 119.99785 * 3 2 1 6 6 H 1.48494 * 109.47140 * 239.99699 * 3 2 1 7 7 C 1.38697 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99632 * 180.02562 * 7 2 1 9 9 O 1.34814 * 120.00469 * 0.02562 * 7 2 1 10 10 C 1.35516 * 116.99829 * 174.94307 * 9 7 2 11 11 C 1.38837 * 120.16547 * 5.59922 * 10 9 7 12 12 C 1.38029 * 120.07054 * 179.72075 * 11 10 9 13 13 C 1.38575 * 120.40200 * 0.55907 * 12 11 10 14 14 C 1.37827 * 120.32438 * 359.71731 * 13 12 11 15 15 C 1.39673 * 119.92057 * 0.02562 * 14 13 12 16 16 C 1.47531 * 120.19744 * 180.02562 * 15 14 13 17 17 O 1.21593 * 119.99925 * 214.12399 * 16 15 14 18 18 N 1.34770 * 120.00321 * 34.11981 * 16 15 14 19 19 C 1.48154 * 122.64344 * 354.01450 * 18 16 15 20 20 C 1.53215 * 110.45076 * 131.53089 * 19 18 16 21 21 O 1.43922 * 111.85151 * 45.51185 * 20 19 18 22 22 C 1.41090 * 111.16363 * 301.83420 * 21 20 19 23 23 H 1.09003 * 109.83717 * 309.01102 * 22 21 20 24 24 C 1.52784 * 118.43107 * 181.81744 * 22 21 20 25 25 C 1.55478 * 102.76784 * 201.27089 * 24 22 21 26 26 C 1.55053 * 106.30588 * 23.95745 * 25 24 22 27 27 C 1.45631 * 122.64908 * 174.29788 * 18 16 15 28 28 H 1.09002 * 109.90845 * 118.50937 * 27 18 16 29 29 H 0.97001 * 119.99341 * 0.02562 * 1 2 3 30 30 H 1.07993 * 119.95703 * 359.97438 * 11 10 9 31 31 H 1.07995 * 119.79563 * 180.25894 * 12 11 10 32 32 H 1.07991 * 119.83481 * 179.74540 * 13 12 11 33 33 H 1.07999 * 120.04206 * 180.02562 * 14 13 12 34 34 H 1.08994 * 109.23480 * 251.92062 * 19 18 16 35 35 H 1.09000 * 109.23111 * 11.29420 * 19 18 16 36 36 H 1.08994 * 109.16177 * 284.81178 * 20 19 18 37 37 H 1.09005 * 108.82668 * 165.98364 * 20 19 18 38 38 H 1.08995 * 110.75291 * 82.95366 * 24 22 21 39 39 H 1.09001 * 110.74950 * 319.59165 * 24 22 21 40 40 H 1.09000 * 110.08806 * 264.74724 * 25 24 22 41 41 H 1.09000 * 110.08669 * 143.16642 * 25 24 22 42 42 H 1.08997 * 110.28534 * 245.10984 * 26 25 24 43 43 H 1.08993 * 110.36977 * 123.04019 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2844 2.7464 0.0006 5 1 3.1030 1.6963 1.2126 6 1 3.1031 1.6963 -1.2124 7 6 2.0086 -1.2012 0.0005 8 1 3.0887 -1.2013 0.0010 9 8 1.3345 -2.3687 0.0005 10 6 2.0685 -3.5029 -0.1054 11 6 3.4554 -3.4403 -0.0908 12 6 4.2011 -4.5973 -0.1930 13 6 3.5743 -5.8264 -0.3222 14 6 2.1986 -5.9072 -0.3443 15 6 1.4308 -4.7454 -0.2365 16 6 -0.0422 -4.8248 -0.2589 17 8 -0.6914 -3.9329 -0.7704 18 7 -0.6683 -5.8858 0.2875 19 6 0.0631 -7.0638 0.8094 20 6 -0.4413 -7.4302 2.2090 21 8 -1.8788 -7.4241 2.2789 22 6 -2.4007 -6.1624 1.9236 23 1 -1.9006 -5.3808 2.4956 24 6 -3.9137 -5.9584 1.9821 25 6 -4.1333 -4.7425 1.0382 26 6 -2.9261 -4.7232 0.0653 27 6 -2.1175 -5.9675 0.4061 28 1 -2.4891 -6.8192 -0.1637 29 1 -0.4849 0.8401 -0.0004 30 1 3.9511 -2.4856 0.0048 31 1 5.2796 -4.5438 -0.1769 32 1 4.1668 -6.7255 -0.4056 33 1 1.7149 -6.8675 -0.4448 34 1 -0.0891 -7.9079 0.1369 35 1 1.1271 -6.8326 0.8591 36 1 -0.0480 -6.7136 2.9300 37 1 -0.0780 -8.4257 2.4643 38 1 -4.2326 -5.7217 2.9972 39 1 -4.4368 -6.8380 1.6070 40 1 -4.1623 -3.8195 1.6172 41 1 -5.0617 -4.8645 0.4804 42 1 -2.3264 -3.8271 0.2250 43 1 -3.2707 -4.7675 -0.9678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299167729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:46 Heat of formation + Delta-G solvation = -44.085373 kcal Electronic energy + Delta-G solvation = -27722.342079 eV Core-core repulsion = 23927.677579 eV Total energy + Delta-G solvation = -3794.664500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69935 -39.22343 -37.63842 -36.60172 -35.90274 -34.40893 -32.38278 -30.77985 -29.59134 -28.97633 -27.97138 -26.64863 -25.42348 -23.44543 -22.68579 -21.73540 -20.85247 -20.47304 -18.97629 -18.12904 -17.05670 -16.55616 -16.23851 -15.96496 -15.37125 -15.08766 -14.88778 -14.58698 -14.46538 -14.09606 -13.93838 -13.66942 -13.41582 -13.20427 -12.92577 -12.68786 -12.52346 -12.01859 -11.75002 -11.64181 -11.50121 -11.30840 -11.24587 -10.97686 -10.95818 -10.88667 -10.66760 -10.55463 -10.44929 -10.22237 -9.88666 -9.56056 -8.91376 -8.66864 -8.24610 -8.05877 -7.36676 -6.49206 -4.09149 1.69160 2.22885 3.09061 3.11359 3.13859 3.28016 3.56091 3.64484 3.90218 4.46145 4.62200 4.75581 4.91935 4.99239 5.05594 5.07955 5.13627 5.22703 5.37846 5.43610 5.46628 5.55018 5.57727 5.61925 5.67140 5.73266 5.78916 5.86268 5.96049 5.97867 6.07492 6.13819 6.19826 6.49533 6.49702 6.55845 6.67654 6.88514 6.97368 7.05759 7.16899 7.19883 7.25031 7.62743 7.85895 7.95058 8.90959 8.95607 9.60711 10.65340 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012652 B = 0.005169 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.610866 B = 5415.744799 C = 7134.745483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.402 4.402 8 H 0.094 0.906 9 O -0.137 6.137 10 C 0.189 3.811 11 C -0.235 4.235 12 C -0.053 4.053 13 C -0.227 4.227 14 C -0.059 4.059 15 C -0.221 4.221 16 C 0.572 3.428 17 O -0.498 6.498 18 N -0.617 5.617 19 C 0.053 3.947 20 C 0.047 3.953 21 O -0.369 6.369 22 C 0.061 3.939 23 H 0.067 0.933 24 C -0.108 4.108 25 C -0.121 4.121 26 C -0.127 4.127 27 C 0.114 3.886 28 H 0.074 0.926 29 H 0.272 0.728 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.070 0.930 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.733 -12.956 3.558 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.201 1.201 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.477 4.477 8 H 0.111 0.889 9 O -0.036 6.036 10 C 0.131 3.869 11 C -0.254 4.254 12 C -0.071 4.071 13 C -0.246 4.246 14 C -0.078 4.078 15 C -0.226 4.226 16 C 0.363 3.637 17 O -0.372 6.372 18 N -0.353 5.353 19 C -0.070 4.070 20 C -0.031 4.031 21 O -0.287 6.287 22 C 0.002 3.998 23 H 0.085 0.915 24 C -0.146 4.146 25 C -0.159 4.159 26 C -0.165 4.165 27 C 0.009 3.991 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.146 0.854 34 H 0.088 0.912 35 H 0.140 0.860 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.664 -12.310 3.323 12.859 hybrid contribution 0.864 0.821 -0.066 1.193 sum -0.800 -11.490 3.257 11.969 Atomic orbital electron populations 1.70087 1.05977 1.27925 1.42941 1.25365 0.95830 0.98929 0.96118 0.85784 0.78788 0.79623 0.79262 1.20139 1.19399 1.19333 1.21389 0.91824 0.80856 1.53662 0.88913 1.84054 1.33949 1.11165 1.74447 1.19192 0.89900 0.87154 0.90701 1.21154 0.93310 0.99358 1.11618 1.20906 0.98689 0.92303 0.95214 1.20498 0.93963 0.97229 1.12950 1.21158 0.93951 0.96085 0.96564 1.18800 0.92008 0.92229 1.19583 1.18175 0.87524 0.80433 0.77591 1.90815 1.66361 1.37235 1.42837 1.47880 1.05728 1.18970 1.62768 1.23222 1.00119 0.88501 0.95156 1.23101 0.81047 1.02649 0.96257 1.87843 1.19661 1.32001 1.89214 1.22980 0.96024 0.85945 0.94826 0.91522 1.22049 0.92983 0.99046 1.00490 1.22559 0.98642 0.97590 0.97140 1.22234 0.95680 0.99444 0.99106 1.22087 0.80974 0.99567 0.96449 0.90849 0.91776 0.85035 0.87122 0.87117 0.85383 0.91194 0.85963 0.92449 0.87925 0.90864 0.90657 0.91140 0.91339 0.87233 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.78 13.67 55.48 0.76 -24.02 16 2 C 0.05 1.24 5.49 -17.51 -0.10 1.14 16 3 Si 0.94 20.31 29.55 -169.99 -5.02 15.29 16 4 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 7 C -0.40 -11.19 9.49 30.90 0.29 -10.89 16 8 H 0.09 2.34 5.21 -52.48 -0.27 2.07 16 9 O -0.14 -3.96 8.37 -17.21 -0.14 -4.11 16 10 C 0.19 4.61 6.63 -38.59 -0.26 4.36 16 11 C -0.24 -4.94 9.16 -39.44 -0.36 -5.31 16 12 C -0.05 -0.90 10.03 -39.53 -0.40 -1.30 16 13 C -0.23 -3.59 10.03 -39.61 -0.40 -3.99 16 14 C -0.06 -1.00 7.54 -39.20 -0.30 -1.29 16 15 C -0.22 -4.76 5.59 -104.81 -0.59 -5.34 16 16 C 0.57 12.63 7.27 -12.47 -0.09 12.54 16 17 O -0.50 -13.10 12.87 -12.74 -0.16 -13.26 16 18 N -0.62 -10.84 2.96 -165.36 -0.49 -11.33 16 19 C 0.05 0.70 5.14 -3.02 -0.02 0.68 16 20 C 0.05 0.56 6.83 37.27 0.25 0.82 16 21 O -0.37 -5.21 10.85 -34.89 -0.38 -5.59 16 22 C 0.06 0.91 2.97 -25.46 -0.08 0.83 16 23 H 0.07 1.11 8.01 -51.93 -0.42 0.69 16 24 C -0.11 -1.34 6.77 -25.53 -0.17 -1.51 16 25 C -0.12 -1.63 6.89 -24.33 -0.17 -1.80 16 26 C -0.13 -2.19 5.33 -26.02 -0.14 -2.33 16 27 C 0.11 1.85 3.15 -67.40 -0.21 1.64 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 31 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.13 1.74 5.31 -52.49 -0.28 1.46 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.12 1.58 3.85 -51.93 -0.20 1.38 16 36 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.11 2.41 5.79 -51.93 -0.30 2.11 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -33.27 339.32 -8.59 -41.86 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.55 Total: 7.81 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -2.71 Total: -11.76 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.27 Total: -35.35 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.69 Total: -22.96 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.27 -8.59 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299167729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.230 kcal (2) G-P(sol) polarization free energy of solvation -33.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds