Wall clock time and date at job start Tue Mar 31 2020 11:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86805 * 119.99389 * 2 1 4 4 H 1.48500 * 109.46765 * 270.00070 * 3 2 1 5 5 H 1.48491 * 109.47301 * 30.00142 * 3 2 1 6 6 H 1.48497 * 109.46851 * 150.00428 * 3 2 1 7 7 C 1.38688 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99943 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.35514 * 117.00294 * 174.93958 * 9 7 2 11 11 C 1.38835 * 120.16206 * 5.60288 * 10 9 7 12 12 C 1.38029 * 120.07807 * 180.02562 * 11 10 9 13 13 C 1.38573 * 120.39723 * 359.97438 * 12 11 10 14 14 C 1.37826 * 120.32656 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91820 * 359.97438 * 14 13 12 16 16 C 1.47542 * 120.19737 * 180.02562 * 15 14 13 17 17 O 1.21594 * 119.99603 * 146.04816 * 16 15 14 18 18 N 1.34775 * 119.99671 * 326.04494 * 16 15 14 19 19 C 1.48144 * 122.64830 * 5.47130 * 18 16 15 20 20 C 1.52361 * 110.92059 * 228.34202 * 19 18 16 21 21 O 1.43925 * 111.98846 * 315.05777 * 20 19 18 22 22 C 1.41103 * 111.16039 * 57.83642 * 21 20 19 23 23 H 1.09003 * 109.77635 * 50.96720 * 22 21 20 24 24 C 1.52789 * 118.42159 * 178.19400 * 22 21 20 25 25 C 1.55484 * 102.75923 * 158.72646 * 24 22 21 26 26 C 1.55037 * 106.31114 * 336.04490 * 25 24 22 27 27 C 1.45642 * 122.63851 * 185.76115 * 18 16 15 28 28 H 1.09005 * 109.89907 * 240.82888 * 27 18 16 29 29 H 0.96998 * 120.00438 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.96296 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.80217 * 180.02562 * 12 11 10 32 32 H 1.07997 * 119.83502 * 180.27667 * 13 12 11 33 33 H 1.08001 * 120.04457 * 180.02562 * 14 13 12 34 34 H 1.08997 * 109.23403 * 348.72284 * 19 18 16 35 35 H 1.09000 * 109.23088 * 108.09397 * 19 18 16 36 36 H 1.08996 * 109.08469 * 194.32783 * 20 19 18 37 37 H 1.09000 * 108.77174 * 75.57838 * 20 19 18 38 38 H 1.08997 * 110.75504 * 277.04151 * 24 22 21 39 39 H 1.08998 * 110.75330 * 40.40786 * 24 22 21 40 40 H 1.08999 * 110.08390 * 95.25444 * 25 24 22 41 41 H 1.08998 * 110.08517 * 216.82786 * 25 24 22 42 42 H 1.09004 * 110.28572 * 237.00612 * 26 25 24 43 43 H 1.08993 * 110.29220 * 114.88668 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4404 0.6999 7 6 2.0088 -1.2010 0.0005 8 1 3.0888 -1.2010 0.0001 9 8 1.3348 -2.3686 0.0016 10 6 2.0688 -3.5028 -0.1044 11 6 3.4556 -3.4400 -0.0909 12 6 4.2015 -4.5963 -0.1996 13 6 3.5748 -5.8261 -0.3222 14 6 2.1990 -5.9076 -0.3374 15 6 1.4311 -4.7461 -0.2284 16 6 -0.0420 -4.8262 -0.2434 17 8 -0.7000 -4.0480 0.4198 18 7 -0.6583 -5.7620 -0.9924 19 6 0.0832 -6.8123 -1.7284 20 6 -0.3997 -6.9102 -3.1702 21 8 -1.8359 -6.8880 -3.2601 22 6 -2.3647 -5.7166 -2.6777 23 1 -1.8556 -4.8416 -3.0818 24 6 -3.8770 -5.5025 -2.7195 25 6 -4.1125 -4.4897 -1.5635 26 6 -2.9207 -4.6592 -0.5865 27 6 -2.1055 -5.8166 -1.1469 28 1 -2.4836 -6.7658 -0.7670 29 1 -0.4851 0.8400 0.0004 30 1 3.9515 -2.4853 0.0038 31 1 5.2801 -4.5424 -0.1882 32 1 4.1673 -6.7255 -0.4020 33 1 1.7153 -6.8685 -0.4327 34 1 1.1464 -6.5723 -1.7226 35 1 -0.0701 -7.7723 -1.2356 36 1 -0.0313 -7.8383 -3.6071 37 1 0.0040 -6.0687 -3.7332 38 1 -4.1803 -5.0752 -3.6752 39 1 -4.4047 -6.4368 -2.5280 40 1 -4.1336 -3.4728 -1.9554 41 1 -5.0493 -4.7145 -1.0539 42 1 -3.2827 -4.9007 0.4129 43 1 -2.3196 -3.7503 -0.5623 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299167732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:48 Heat of formation + Delta-G solvation = -44.775236 kcal Electronic energy + Delta-G solvation = -27744.954600 eV Core-core repulsion = 23950.260186 eV Total energy + Delta-G solvation = -3794.694415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.71069 -39.22806 -37.64229 -36.60854 -35.90913 -34.41479 -32.39432 -30.77868 -29.63975 -28.98462 -27.96446 -26.65696 -25.43239 -23.43198 -22.68068 -21.73596 -20.85187 -20.46590 -18.97940 -18.13164 -17.06930 -16.55253 -16.24588 -15.96491 -15.36091 -15.11308 -14.88742 -14.59572 -14.46190 -14.08870 -13.92684 -13.68867 -13.43241 -13.19689 -12.89296 -12.67160 -12.57145 -12.02703 -11.75269 -11.65167 -11.52406 -11.29678 -11.23448 -10.98748 -10.96152 -10.87484 -10.66501 -10.53738 -10.45616 -10.22613 -9.88389 -9.56348 -8.92670 -8.67690 -8.25111 -8.06048 -7.37175 -6.50718 -4.10491 1.68959 2.22769 3.08788 3.09136 3.14367 3.27256 3.56503 3.64909 3.89158 4.45873 4.62493 4.77071 4.92702 5.02117 5.05425 5.08307 5.10458 5.22815 5.38141 5.43842 5.46874 5.55232 5.58257 5.62411 5.67192 5.73495 5.79234 5.86649 5.96577 5.98090 6.07314 6.14061 6.20478 6.49214 6.49937 6.55710 6.67611 6.88345 6.97274 7.06029 7.17134 7.19704 7.24628 7.62448 7.85134 7.94628 8.89856 8.94949 9.60128 10.63960 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012270 B = 0.005265 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.508731 B = 5316.603435 C = 7001.994690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.401 4.401 8 H 0.094 0.906 9 O -0.136 6.136 10 C 0.190 3.810 11 C -0.235 4.235 12 C -0.053 4.053 13 C -0.227 4.227 14 C -0.059 4.059 15 C -0.222 4.222 16 C 0.573 3.427 17 O -0.501 6.501 18 N -0.616 5.616 19 C 0.053 3.947 20 C 0.047 3.953 21 O -0.369 6.369 22 C 0.060 3.940 23 H 0.067 0.933 24 C -0.108 4.108 25 C -0.121 4.121 26 C -0.126 4.126 27 C 0.114 3.886 28 H 0.074 0.926 29 H 0.272 0.728 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.633 -12.086 -5.538 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.477 4.477 8 H 0.112 0.888 9 O -0.035 6.035 10 C 0.131 3.869 11 C -0.254 4.254 12 C -0.071 4.071 13 C -0.246 4.246 14 C -0.077 4.077 15 C -0.227 4.227 16 C 0.364 3.636 17 O -0.375 6.375 18 N -0.352 5.352 19 C -0.070 4.070 20 C -0.031 4.031 21 O -0.287 6.287 22 C 0.001 3.999 23 H 0.085 0.915 24 C -0.146 4.146 25 C -0.159 4.159 26 C -0.164 4.164 27 C 0.009 3.991 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.561 -11.504 -5.181 12.713 hybrid contribution 0.857 0.816 0.072 1.186 sum -0.704 -10.688 -5.109 11.868 Atomic orbital electron populations 1.70090 1.05983 1.27847 1.43095 1.25366 0.95831 0.98949 0.96123 0.85712 0.79026 0.79919 0.78785 1.19761 1.20095 1.19039 1.21451 0.91888 0.80882 1.53494 0.88846 1.84077 1.33925 1.11165 1.74372 1.19213 0.89904 0.87211 0.90581 1.21157 0.93301 0.99402 1.11570 1.20908 0.98695 0.92302 0.95204 1.20501 0.93972 0.97177 1.12979 1.21152 0.93942 0.96320 0.96287 1.18797 0.92014 0.92384 1.19513 1.18160 0.87569 0.79185 0.78663 1.90801 1.65885 1.39949 1.40882 1.47855 1.05801 1.31369 1.50218 1.23029 1.00016 0.91474 0.92445 1.22947 0.81166 1.02992 0.95968 1.87848 1.19683 1.41006 1.80190 1.23002 0.96019 0.88189 0.92686 0.91514 1.22048 0.92956 1.00060 0.99486 1.22559 0.98678 0.99172 0.95533 1.22223 0.95761 1.00428 0.97983 1.22090 0.81058 0.99816 0.96098 0.90836 0.91811 0.85025 0.87114 0.87109 0.85397 0.85996 0.91251 0.87836 0.92523 0.90860 0.90662 0.91119 0.91344 0.91264 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.71 13.67 55.48 0.76 -23.95 16 2 C 0.04 1.22 5.49 -17.52 -0.10 1.12 16 3 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.40 -11.15 9.49 30.90 0.29 -10.86 16 8 H 0.09 2.36 5.21 -52.48 -0.27 2.09 16 9 O -0.14 -3.94 8.37 -17.26 -0.14 -4.09 16 10 C 0.19 4.62 6.63 -38.60 -0.26 4.37 16 11 C -0.24 -4.94 9.16 -39.44 -0.36 -5.30 16 12 C -0.05 -0.90 10.03 -39.53 -0.40 -1.30 16 13 C -0.23 -3.58 10.02 -39.61 -0.40 -3.98 16 14 C -0.06 -0.99 7.53 -39.20 -0.30 -1.28 16 15 C -0.22 -4.78 5.59 -104.81 -0.59 -5.36 16 16 C 0.57 12.67 7.27 -12.47 -0.09 12.58 16 17 O -0.50 -13.13 12.86 -12.80 -0.16 -13.29 16 18 N -0.62 -10.86 2.97 -165.87 -0.49 -11.36 16 19 C 0.05 0.70 5.06 -3.46 -0.02 0.69 16 20 C 0.05 0.57 6.79 36.83 0.25 0.82 16 21 O -0.37 -5.25 10.85 -34.90 -0.38 -5.63 16 22 C 0.06 0.90 2.97 -25.46 -0.08 0.82 16 23 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 24 C -0.11 -1.35 6.77 -25.52 -0.17 -1.52 16 25 C -0.12 -1.64 6.88 -24.33 -0.17 -1.81 16 26 C -0.13 -2.19 5.33 -26.03 -0.14 -2.33 16 27 C 0.11 1.86 3.16 -67.40 -0.21 1.65 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.13 2.74 5.64 -52.48 -0.30 2.44 16 31 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.13 1.74 5.32 -52.49 -0.28 1.46 16 34 H 0.12 1.59 3.89 -51.93 -0.20 1.39 16 35 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.11 2.43 5.79 -51.93 -0.30 2.13 16 LS Contribution 339.26 15.07 5.11 5.11 Total: -1.00 -33.18 339.26 -8.60 -41.78 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.55 Total: 7.90 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.72 Total: -11.70 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.27 Total: -35.31 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.69 Total: -23.01 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.18 -8.60 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299167732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.993 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds