Wall clock time and date at job start Tue Mar 31 2020 11:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86807 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47027 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46699 * 299.99999 * 3 2 1 6 6 H 1.48503 * 109.46708 * 59.99973 * 3 2 1 7 7 C 1.39929 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00121 * 191.83436 * 7 2 1 9 9 C 1.41409 * 119.99794 * 11.83741 * 7 2 1 10 10 C 1.40773 * 120.21321 * 28.13339 * 9 7 2 11 11 C 1.37641 * 119.88770 * 179.97438 * 10 9 7 12 12 C 1.38538 * 120.32047 * 0.27310 * 11 10 9 13 13 C 1.39246 * 120.42875 * 359.44887 * 12 11 10 14 14 N 1.39934 * 119.94948 * 180.25626 * 13 12 11 15 15 C 1.34780 * 119.99932 * 33.24182 * 14 13 12 16 16 O 1.21285 * 119.99911 * 5.19312 * 15 14 13 17 17 C 1.50697 * 119.99966 * 185.18706 * 15 14 13 18 18 C 1.53001 * 109.46773 * 176.17152 * 17 15 14 19 19 C 1.50701 * 110.01745 * 301.30582 * 18 17 15 20 20 O 1.20829 * 119.99756 * 125.54219 * 19 18 17 21 21 O 1.34230 * 120.00274 * 305.54156 * 19 18 17 22 22 C 1.54270 * 110.03149 * 179.97438 * 18 17 15 23 23 C 1.54967 * 104.15981 * 217.13839 * 22 18 17 24 24 C 1.54890 * 102.77434 * 37.88624 * 23 22 18 25 25 C 1.53867 * 110.03496 * 62.70195 * 18 17 15 26 26 C 1.38282 * 120.10138 * 0.54881 * 13 12 11 27 27 H 0.97003 * 120.00473 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.05576 * 359.97438 * 10 9 7 29 29 H 1.07996 * 119.83631 * 179.97438 * 11 10 9 30 30 H 1.07997 * 119.78215 * 179.72417 * 12 11 10 31 31 H 0.96990 * 120.00194 * 213.24628 * 14 13 12 32 32 H 1.08994 * 109.47237 * 296.17377 * 17 15 14 33 33 H 1.09002 * 109.46750 * 56.17518 * 17 15 14 34 34 H 0.96703 * 116.99955 * 179.97438 * 21 19 18 35 35 H 1.09001 * 110.48151 * 335.78417 * 22 18 17 36 36 H 1.08999 * 110.48744 * 98.42216 * 22 18 17 37 37 H 1.08997 * 110.71610 * 279.57401 * 23 22 18 38 38 H 1.08993 * 110.76180 * 156.21840 * 23 22 18 39 39 H 1.09005 * 110.48262 * 203.40395 * 24 23 22 40 40 H 1.08997 * 110.48768 * 80.76456 * 24 23 22 41 41 H 1.08997 * 110.03455 * 238.56903 * 25 18 17 42 42 H 1.09003 * 110.03029 * 359.97438 * 25 18 17 43 43 H 1.08008 * 120.15843 * 179.75172 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3964 1.2126 7 6 2.0079 -1.2118 0.0005 8 1 3.0707 -1.2216 0.1924 9 6 1.3234 -2.4235 -0.2501 10 6 0.1633 -2.4299 -1.0474 11 6 -0.4974 -3.6133 -1.2875 12 6 -0.0295 -4.7984 -0.7436 13 6 1.1200 -4.8083 0.0422 14 7 1.5867 -6.0119 0.5822 15 6 1.4255 -7.1635 -0.0991 16 8 0.9617 -7.1454 -1.2196 17 6 1.8215 -8.4738 0.5313 18 6 1.4496 -9.6240 -0.4066 19 6 -0.0315 -9.6051 -0.6840 20 8 -0.4324 -9.5815 -1.8236 21 8 -0.9054 -9.6144 0.3348 22 6 1.8503 -10.9726 0.2264 23 6 2.3408 -11.8232 -0.9725 24 6 3.0875 -10.7850 -1.8464 25 6 2.2344 -9.5041 -1.7247 26 6 1.7976 -3.6296 0.2948 27 1 -0.4851 0.8400 -0.0004 28 1 -0.2078 -1.5078 -1.4700 29 1 -1.3876 -3.6171 -1.8990 30 1 -0.5572 -5.7212 -0.9340 31 1 2.0262 -6.0174 1.4468 32 1 2.8971 -8.4818 0.7074 33 1 1.2972 -8.5939 1.4794 34 1 -1.8451 -9.6011 0.1073 35 1 2.6549 -10.8311 0.9480 36 1 0.9889 -11.4420 0.7013 37 1 1.4962 -12.2484 -1.5147 38 1 3.0205 -12.6068 -0.6379 39 1 3.1285 -11.1184 -2.8834 40 1 4.0920 -10.6131 -1.4599 41 1 1.5440 -9.4331 -2.5651 42 1 2.8799 -8.6262 -1.6963 43 1 2.6870 -3.6356 0.9075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313439264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:24 Heat of formation + Delta-G solvation = -121.055514 kcal Electronic energy + Delta-G solvation = -26554.600780 eV Core-core repulsion = 22756.598604 eV Total energy + Delta-G solvation = -3798.002176 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09369 -39.46186 -37.89537 -37.02312 -35.95457 -34.42656 -33.09735 -31.95948 -29.82153 -28.95799 -28.49279 -26.18050 -25.21873 -23.52029 -21.67313 -21.11196 -20.90802 -19.78175 -19.23504 -17.80653 -17.57832 -17.02118 -16.55340 -15.92907 -15.50427 -15.27438 -15.07469 -14.76131 -14.51098 -14.37227 -13.72654 -13.41067 -13.33720 -12.94086 -12.84880 -12.39283 -12.20408 -11.72259 -11.68525 -11.57985 -11.39919 -11.33710 -11.27442 -11.18188 -11.11609 -11.01332 -10.66676 -10.60914 -10.54886 -10.20343 -10.16901 -9.72563 -9.40965 -9.18092 -8.92934 -7.44255 -6.88776 -6.69787 -4.38005 2.35471 2.54287 2.80664 3.01095 3.08415 3.13605 3.17096 3.33304 3.54907 3.95390 4.24755 4.28399 4.53304 4.67973 4.88524 4.96586 5.03400 5.22176 5.27883 5.36385 5.42305 5.52273 5.56289 5.62185 5.69655 5.73724 5.95216 5.97642 6.15644 6.29071 6.36843 6.53304 6.62390 6.73088 6.92354 6.99926 7.04827 7.26685 7.59705 7.66048 7.97414 8.00161 8.04600 8.13396 8.31060 8.57150 8.68946 8.90705 8.97024 10.24616 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028689 B = 0.002824 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.732798 B = 9914.079293 C =10298.302931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.121 3.879 10 C -0.160 4.160 11 C -0.098 4.098 12 C -0.220 4.220 13 C 0.150 3.850 14 N -0.666 5.666 15 C 0.496 3.504 16 O -0.510 6.510 17 C -0.132 4.132 18 C -0.031 4.031 19 C 0.493 3.507 20 O -0.496 6.496 21 O -0.521 6.521 22 C -0.112 4.112 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.109 4.109 26 C -0.242 4.242 27 H 0.279 0.721 28 H 0.121 0.879 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.400 0.600 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.408 0.592 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.919 -18.703 3.790 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.118 3.882 10 C -0.180 4.180 11 C -0.118 4.118 12 C -0.241 4.241 13 C 0.058 3.942 14 N -0.309 5.309 15 C 0.282 3.718 16 O -0.385 6.385 17 C -0.172 4.172 18 C -0.033 4.033 19 C 0.334 3.666 20 O -0.382 6.382 21 O -0.333 6.333 22 C -0.150 4.150 23 C -0.164 4.164 24 C -0.163 4.163 25 C -0.146 4.146 26 C -0.264 4.264 27 H 0.090 0.910 28 H 0.139 0.861 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.234 0.766 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.266 0.734 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.685 -18.559 2.772 19.123 hybrid contribution -0.152 0.961 0.452 1.073 sum 3.533 -17.597 3.223 18.236 Atomic orbital electron populations 1.69807 1.07416 1.28880 1.36721 1.25870 0.94803 1.01170 0.92390 0.86241 0.80792 0.81037 0.78477 1.18530 1.19802 1.20061 1.19530 0.96093 0.90445 1.43460 0.90551 1.17385 0.91353 0.91429 0.88026 1.21422 0.98720 0.96618 1.01232 1.20609 0.98682 0.92942 0.99522 1.20315 0.98446 0.97484 1.07830 1.17422 0.94338 0.83552 0.98856 1.43478 1.58918 1.06385 1.22142 1.20581 0.79429 0.85393 0.86393 1.90809 1.43087 1.86679 1.17952 1.21885 1.04222 0.91241 0.99886 1.20857 0.87878 0.96357 0.98189 1.22982 0.89540 0.71457 0.82631 1.90668 1.79790 1.44373 1.23325 1.84473 1.21931 1.86078 1.40848 1.22508 1.01895 0.92491 0.98105 1.22550 1.00151 0.97644 0.96093 1.22441 0.98727 0.94990 1.00178 1.22301 0.98490 0.97842 0.95978 1.20731 1.03373 0.92332 1.09949 0.91048 0.86139 0.89074 0.88208 0.76602 0.87459 0.87775 0.73385 0.89693 0.90580 0.91427 0.90985 0.91296 0.91440 0.88668 0.90646 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.86 10.85 55.55 0.60 -20.25 16 2 C 0.07 1.86 5.24 -17.35 -0.09 1.77 16 3 Si 0.91 18.74 29.58 -169.99 -5.03 13.72 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.46 -12.31 9.06 -37.74 -0.34 -12.65 16 8 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 9 C 0.12 3.24 5.55 -106.85 -0.59 2.64 16 10 C -0.16 -4.27 8.66 -38.84 -0.34 -4.60 16 11 C -0.10 -2.45 10.02 -39.69 -0.40 -2.85 16 12 C -0.22 -5.32 8.67 -39.10 -0.34 -5.66 16 13 C 0.15 3.39 6.27 -83.77 -0.53 2.86 16 14 N -0.67 -11.52 5.34 -9.91 -0.05 -11.57 16 15 C 0.50 8.18 6.74 -10.99 -0.07 8.10 16 16 O -0.51 -10.51 11.07 0.40 0.00 -10.51 16 17 C -0.13 -1.45 4.38 -27.88 -0.12 -1.57 16 18 C -0.03 -0.36 0.59 -154.54 -0.09 -0.45 16 19 C 0.49 6.97 5.20 36.01 0.19 7.16 16 20 O -0.50 -8.79 15.73 -21.92 -0.34 -9.14 16 21 O -0.52 -5.98 13.14 -39.26 -0.52 -6.50 16 22 C -0.11 -0.92 5.90 -25.03 -0.15 -1.07 16 23 C -0.13 -1.02 6.91 -24.70 -0.17 -1.19 16 24 C -0.13 -1.16 6.83 -25.01 -0.17 -1.33 16 25 C -0.11 -1.38 4.73 -25.56 -0.12 -1.50 16 26 C -0.24 -5.85 9.70 -38.68 -0.38 -6.22 16 27 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 28 H 0.12 3.30 6.20 -52.49 -0.33 2.97 16 29 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.10 2.42 6.39 -52.49 -0.34 2.09 16 31 H 0.40 5.41 8.81 -40.82 -0.36 5.05 16 32 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.41 3.29 9.10 45.56 0.41 3.70 16 35 H 0.08 0.53 7.85 -51.93 -0.41 0.12 16 36 H 0.08 0.60 7.76 -51.93 -0.40 0.19 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 1.50 6.41 -51.93 -0.33 1.17 16 42 H 0.07 1.02 7.02 -51.93 -0.36 0.65 16 43 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -33.41 352.10 -8.78 -42.19 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -5.04 Total: 13.32 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -3.71 Total: -16.56 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.55 Total: -31.83 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.86 Total: -26.14 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.41 -8.78 -42.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313439264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.868 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds