Wall clock time and date at job start Tue Mar 31 2020 11:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86807 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47027 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46699 * 299.99999 * 3 2 1 6 6 H 1.48503 * 109.46708 * 59.99973 * 3 2 1 7 7 C 1.39929 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00121 * 191.83436 * 7 2 1 9 9 C 1.41409 * 119.99794 * 11.83741 * 7 2 1 10 10 C 1.40773 * 120.21321 * 28.13339 * 9 7 2 11 11 C 1.37641 * 119.88770 * 179.97438 * 10 9 7 12 12 C 1.38538 * 120.32047 * 0.27310 * 11 10 9 13 13 C 1.39246 * 120.42875 * 359.44887 * 12 11 10 14 14 N 1.39934 * 119.94948 * 180.25626 * 13 12 11 15 15 C 1.34780 * 119.99932 * 33.24182 * 14 13 12 16 16 O 1.21285 * 119.99911 * 5.19312 * 15 14 13 17 17 C 1.50697 * 119.99966 * 185.18706 * 15 14 13 18 18 C 1.53001 * 109.46773 * 176.17152 * 17 15 14 19 19 C 1.50701 * 110.01745 * 301.30582 * 18 17 15 20 20 O 1.20829 * 119.99756 * 125.54219 * 19 18 17 21 21 O 1.34230 * 120.00274 * 305.54156 * 19 18 17 22 22 C 1.54270 * 110.03149 * 179.97438 * 18 17 15 23 23 C 1.54967 * 104.15981 * 217.13839 * 22 18 17 24 24 C 1.54890 * 102.77434 * 37.88624 * 23 22 18 25 25 C 1.53867 * 110.03496 * 62.70195 * 18 17 15 26 26 C 1.38282 * 120.10138 * 0.54881 * 13 12 11 27 27 H 0.97003 * 120.00473 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.05576 * 359.97438 * 10 9 7 29 29 H 1.07996 * 119.83631 * 179.97438 * 11 10 9 30 30 H 1.07997 * 119.78215 * 179.72417 * 12 11 10 31 31 H 0.96990 * 120.00194 * 213.24628 * 14 13 12 32 32 H 1.08994 * 109.47237 * 296.17377 * 17 15 14 33 33 H 1.09002 * 109.46750 * 56.17518 * 17 15 14 34 34 H 0.96703 * 116.99955 * 179.97438 * 21 19 18 35 35 H 1.09001 * 110.48151 * 335.78417 * 22 18 17 36 36 H 1.08999 * 110.48744 * 98.42216 * 22 18 17 37 37 H 1.08997 * 110.71610 * 279.57401 * 23 22 18 38 38 H 1.08993 * 110.76180 * 156.21840 * 23 22 18 39 39 H 1.09005 * 110.48262 * 203.40395 * 24 23 22 40 40 H 1.08997 * 110.48768 * 80.76456 * 24 23 22 41 41 H 1.08997 * 110.03455 * 238.56903 * 25 18 17 42 42 H 1.09003 * 110.03029 * 359.97438 * 25 18 17 43 43 H 1.08008 * 120.15843 * 179.75172 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3964 1.2126 7 6 2.0079 -1.2118 0.0005 8 1 3.0707 -1.2216 0.1924 9 6 1.3234 -2.4235 -0.2501 10 6 0.1633 -2.4299 -1.0474 11 6 -0.4974 -3.6133 -1.2875 12 6 -0.0295 -4.7984 -0.7436 13 6 1.1200 -4.8083 0.0422 14 7 1.5867 -6.0119 0.5822 15 6 1.4255 -7.1635 -0.0991 16 8 0.9617 -7.1454 -1.2196 17 6 1.8215 -8.4738 0.5313 18 6 1.4496 -9.6240 -0.4066 19 6 -0.0315 -9.6051 -0.6840 20 8 -0.4324 -9.5815 -1.8236 21 8 -0.9054 -9.6144 0.3348 22 6 1.8503 -10.9726 0.2264 23 6 2.3408 -11.8232 -0.9725 24 6 3.0875 -10.7850 -1.8464 25 6 2.2344 -9.5041 -1.7247 26 6 1.7976 -3.6296 0.2948 27 1 -0.4851 0.8400 -0.0004 28 1 -0.2078 -1.5078 -1.4700 29 1 -1.3876 -3.6171 -1.8990 30 1 -0.5572 -5.7212 -0.9340 31 1 2.0262 -6.0174 1.4468 32 1 2.8971 -8.4818 0.7074 33 1 1.2972 -8.5939 1.4794 34 1 -1.8451 -9.6011 0.1073 35 1 2.6549 -10.8311 0.9480 36 1 0.9889 -11.4420 0.7013 37 1 1.4962 -12.2484 -1.5147 38 1 3.0205 -12.6068 -0.6379 39 1 3.1285 -11.1184 -2.8834 40 1 4.0920 -10.6131 -1.4599 41 1 1.5440 -9.4331 -2.5651 42 1 2.8799 -8.6262 -1.6963 43 1 2.6870 -3.6356 0.9075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313439264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:24 Heat of formation + Delta-G solvation = -142.406871 kcal Electronic energy + Delta-G solvation = -26555.526644 eV Core-core repulsion = 22756.598604 eV Total energy + Delta-G solvation = -3798.928040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.17510 -40.86501 -39.18984 -38.40704 -37.03073 -36.12204 -34.87373 -32.91476 -31.77722 -30.18417 -29.67700 -27.37715 -27.10149 -24.45530 -23.28717 -22.81417 -21.84304 -21.26725 -20.25446 -19.42912 -18.78689 -18.19420 -17.68926 -17.43741 -16.98148 -16.67056 -16.49241 -16.17066 -15.67180 -15.51850 -15.09512 -14.91671 -14.56389 -14.20420 -14.14127 -14.01923 -13.66084 -13.21566 -13.14209 -12.83228 -12.60370 -12.52466 -12.47846 -12.36368 -12.24166 -12.01759 -11.97167 -11.91194 -11.76629 -11.55793 -11.52820 -11.20111 -11.17869 -10.89473 -10.60328 -9.41113 -8.72164 -8.59147 -6.38855 0.85082 0.94591 1.29956 1.40073 1.48956 1.55221 1.80152 2.06654 2.21576 2.27540 2.77237 3.40368 3.42878 3.69995 3.72836 3.88999 4.23181 4.24869 4.39280 4.41122 4.53555 4.58401 4.62531 4.70089 4.76117 4.81954 4.97987 4.99067 5.02621 5.10403 5.12801 5.19221 5.23873 5.26681 5.32917 5.34111 5.47902 5.67639 5.73871 5.81731 6.07797 6.09219 6.28088 6.62242 6.70950 6.92914 6.97580 7.01526 7.31759 8.37400 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028689 B = 0.002824 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.732798 B = 9914.079293 C =10298.302931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.031 3.969 3 Si 0.986 3.014 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.495 4.495 8 H 0.080 0.920 9 C 0.094 3.906 10 C -0.189 4.189 11 C -0.104 4.104 12 C -0.234 4.234 13 C 0.164 3.836 14 N -0.658 5.658 15 C 0.491 3.509 16 O -0.555 6.555 17 C -0.120 4.120 18 C -0.035 4.035 19 C 0.488 3.512 20 O -0.545 6.545 21 O -0.513 6.513 22 C -0.103 4.103 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.111 4.111 26 C -0.251 4.251 27 H 0.287 0.713 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.421 0.579 32 H 0.150 0.850 33 H 0.134 0.866 34 H 0.420 0.580 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.110 -20.083 6.253 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.525 4.525 8 H 0.098 0.902 9 C 0.091 3.909 10 C -0.209 4.209 11 C -0.122 4.122 12 C -0.255 4.255 13 C 0.071 3.929 14 N -0.304 5.304 15 C 0.280 3.720 16 O -0.432 6.432 17 C -0.159 4.159 18 C -0.036 4.036 19 C 0.331 3.669 20 O -0.435 6.435 21 O -0.326 6.326 22 C -0.140 4.140 23 C -0.162 4.162 24 C -0.158 4.158 25 C -0.149 4.149 26 C -0.273 4.273 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.259 0.741 32 H 0.167 0.833 33 H 0.152 0.848 34 H 0.281 0.719 35 H 0.138 0.862 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.119 0.881 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.876 -19.983 5.289 21.490 hybrid contribution -0.915 1.304 -0.341 1.629 sum 4.961 -18.679 4.948 19.950 Atomic orbital electron populations 1.69879 1.08991 1.30316 1.36722 1.26786 0.95580 1.04589 0.91277 0.85096 0.79377 0.76051 0.78775 1.17931 1.19310 1.19002 1.19817 0.96446 0.91386 1.44867 0.90188 1.17772 0.91749 0.92880 0.88465 1.21326 1.00055 0.96474 1.03051 1.20796 0.98994 0.92921 0.99538 1.20396 0.99475 0.96862 1.08800 1.17421 0.93034 0.85309 0.97154 1.43441 1.58927 1.04982 1.23087 1.21679 0.77858 0.86655 0.85810 1.90816 1.44794 1.87375 1.20254 1.21995 1.07096 0.86829 0.99966 1.21035 0.85789 0.98793 0.98008 1.23682 0.90997 0.70016 0.82214 1.90655 1.80767 1.46716 1.25319 1.84438 1.22921 1.85409 1.39852 1.22575 1.03271 0.89806 0.98374 1.22563 1.00007 0.97916 0.95704 1.22440 0.99325 0.93508 1.00557 1.22233 0.98031 0.99205 0.95401 1.20920 1.04062 0.92106 1.10193 0.90287 0.87825 0.87936 0.88588 0.74078 0.83255 0.84771 0.71907 0.86195 0.89929 0.93066 0.88128 0.91891 0.89126 0.93029 0.92004 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.22 10.85 21.82 0.24 -43.98 16 2 C 0.03 1.59 5.24 85.25 0.45 2.04 16 3 Si 0.99 38.28 29.58 68.60 2.03 40.31 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.50 -26.64 9.06 23.46 0.21 -26.43 16 8 H 0.08 4.09 7.87 -2.91 -0.02 4.07 16 9 C 0.09 5.17 5.55 -21.31 -0.12 5.05 16 10 C -0.19 -10.51 8.66 22.75 0.20 -10.31 16 11 C -0.10 -5.36 10.02 22.20 0.22 -5.13 16 12 C -0.23 -11.59 8.67 22.58 0.20 -11.40 16 13 C 0.16 7.39 6.27 38.10 0.24 7.63 16 14 N -0.66 -21.58 5.34 -303.66 -1.62 -23.20 16 15 C 0.49 15.41 6.74 87.66 0.59 16.00 16 16 O -0.55 -23.15 11.07 1.88 0.02 -23.13 16 17 C -0.12 -2.17 4.38 29.85 0.13 -2.04 16 18 C -0.03 -0.72 0.59 -52.20 -0.03 -0.76 16 19 C 0.49 13.56 5.20 71.24 0.37 13.93 16 20 O -0.55 -20.23 15.73 24.98 0.39 -19.84 16 21 O -0.51 -11.03 13.14 -51.42 -0.68 -11.71 16 22 C -0.10 -1.25 5.90 31.70 0.19 -1.06 16 23 C -0.12 -1.62 6.91 31.91 0.22 -1.40 16 24 C -0.12 -1.99 6.83 31.71 0.22 -1.77 16 25 C -0.11 -2.77 4.73 31.35 0.15 -2.62 16 26 C -0.25 -12.14 9.70 22.85 0.22 -11.92 16 27 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 28 H 0.10 5.99 6.20 -2.91 -0.02 5.97 16 29 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 30 H 0.10 4.80 6.39 -2.91 -0.02 4.78 16 31 H 0.42 10.06 8.81 -92.72 -0.82 9.24 16 32 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.13 1.75 8.08 -2.39 -0.02 1.73 16 34 H 0.42 6.51 9.10 -74.06 -0.67 5.83 16 35 H 0.12 0.69 7.85 -2.39 -0.02 0.67 16 36 H 0.08 0.95 7.76 -2.39 -0.02 0.93 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.05 1.74 6.41 -2.39 -0.02 1.72 16 42 H 0.06 1.65 7.02 -2.39 -0.02 1.63 16 43 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -77.95 352.10 3.40 -74.55 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: -0.43 Total: 37.19 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 3.45 Total: -30.19 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: -1.38 Total: -67.18 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -0.26 Total: -54.68 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -77.95 3.40 -74.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313439264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.859 kcal (2) G-P(sol) polarization free energy of solvation -77.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds