Wall clock time and date at job start Tue Mar 31 2020 11:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 120.00276 * 2 1 4 4 H 1.48501 * 109.46829 * 274.69338 * 3 2 1 5 5 H 1.48500 * 109.47264 * 34.68671 * 3 2 1 6 6 H 1.48491 * 109.47411 * 154.69014 * 3 2 1 7 7 C 1.39931 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00459 * 162.43117 * 7 2 1 9 9 C 1.41414 * 119.99859 * 342.42795 * 7 2 1 10 10 C 1.40777 * 120.21013 * 335.19198 * 9 7 2 11 11 C 1.37633 * 119.88606 * 179.97438 * 10 9 7 12 12 C 1.38529 * 120.32332 * 0.02562 * 11 10 9 13 13 C 1.39256 * 120.42981 * 359.67971 * 12 11 10 14 14 N 1.39931 * 119.95196 * 180.30492 * 13 12 11 15 15 C 1.34780 * 120.00030 * 33.17698 * 14 13 12 16 16 O 1.21285 * 120.00005 * 5.17949 * 15 14 13 17 17 C 1.50700 * 119.99637 * 185.16836 * 15 14 13 18 18 H 1.09005 * 109.47195 * 60.01001 * 17 15 14 19 19 C 1.52996 * 109.47546 * 300.00280 * 17 15 14 20 20 C 1.53003 * 109.47319 * 300.00394 * 19 17 15 21 21 C 1.53007 * 109.46794 * 299.99841 * 20 19 17 22 22 C 1.52996 * 109.47058 * 59.99999 * 21 20 19 23 23 C 1.53003 * 109.47319 * 299.99680 * 22 21 20 24 24 H 1.08990 * 109.47311 * 300.00325 * 23 22 21 25 25 C 1.50704 * 109.47302 * 180.02562 * 23 22 21 26 26 O 1.20830 * 119.99883 * 240.00540 * 25 23 22 27 27 O 1.34224 * 119.99632 * 59.99975 * 25 23 22 28 28 C 1.38281 * 120.10055 * 0.59878 * 13 12 11 29 29 H 0.97006 * 119.99584 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.05683 * 359.95317 * 10 9 7 31 31 H 1.08002 * 119.83931 * 180.02562 * 11 10 9 32 32 H 1.08007 * 119.78703 * 180.02562 * 12 11 10 33 33 H 0.97004 * 119.99864 * 213.18577 * 14 13 12 34 34 H 1.08995 * 109.46746 * 60.00446 * 19 17 15 35 35 H 1.08999 * 109.46969 * 180.02562 * 19 17 15 36 36 H 1.08993 * 109.46908 * 59.99360 * 20 19 17 37 37 H 1.08995 * 109.47176 * 180.02562 * 20 19 17 38 38 H 1.08999 * 109.46705 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.47306 * 300.00112 * 21 20 19 40 40 H 1.09002 * 109.47429 * 59.99695 * 22 21 20 41 41 H 1.08995 * 109.47261 * 179.97438 * 22 21 20 42 42 H 0.96706 * 116.99583 * 179.97438 * 27 25 23 43 43 H 1.07997 * 120.16279 * 179.69803 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3906 2.1036 -1.3954 5 1 1.4929 2.6221 0.7968 6 1 3.5859 1.4136 0.5985 7 6 2.0080 -1.2118 0.0005 8 1 3.0502 -1.2338 -0.2818 9 6 1.3504 -2.4078 0.3708 10 6 0.2204 -2.3644 1.2093 11 6 -0.4148 -3.5325 1.5651 12 6 0.0526 -4.7517 1.1025 13 6 1.1656 -4.8096 0.2674 14 7 1.6253 -6.0461 -0.1992 15 6 0.7502 -7.0409 -0.4461 16 8 -0.4418 -6.8367 -0.3544 17 6 1.2529 -8.4070 -0.8363 18 1 1.8840 -8.8029 -0.0405 19 6 2.0665 -8.3014 -2.1277 20 6 1.1807 -7.7457 -3.2446 21 6 -0.0085 -8.6826 -3.4662 22 6 -0.8221 -8.7881 -2.1748 23 6 0.0637 -9.3439 -1.0579 24 1 0.4273 -10.3319 -1.3401 25 6 -0.7379 -9.4485 0.2140 26 8 -0.3936 -8.8362 1.1971 27 8 -1.8343 -10.2217 0.2545 28 6 1.8207 -3.6474 -0.0964 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1472 -1.4163 1.5731 31 1 -1.2819 -3.4983 2.2081 32 1 -0.4527 -5.6629 1.3867 33 1 2.5739 -6.1872 -0.3448 34 1 2.9137 -7.6340 -1.9698 35 1 2.4297 -9.2895 -2.4101 36 1 0.8172 -6.7577 -2.9623 37 1 1.7602 -7.6709 -4.1647 38 1 -0.6397 -8.2864 -4.2616 39 1 0.3550 -9.6706 -3.7484 40 1 -1.1856 -7.8001 -1.8925 41 1 -1.6695 -9.4552 -2.3328 42 1 -2.3155 -10.2574 1.0926 43 1 2.6869 -3.6916 -0.7400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313443604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:17 Heat of formation + Delta-G solvation = -122.788176 kcal Electronic energy + Delta-G solvation = -27100.400700 eV Core-core repulsion = 23302.323391 eV Total energy + Delta-G solvation = -3798.077309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17987 -39.43926 -37.84213 -36.56911 -35.96846 -34.39551 -33.10433 -31.40240 -31.20015 -29.77219 -28.03872 -25.20703 -24.83260 -23.41165 -21.84961 -21.16470 -20.95767 -20.27289 -18.95871 -17.89064 -17.56515 -16.93649 -16.39996 -15.65848 -15.43019 -15.29399 -15.01378 -14.55978 -14.41203 -13.93652 -13.76806 -13.64283 -13.03181 -12.88354 -12.72129 -12.52172 -12.36117 -12.15004 -12.11370 -11.62030 -11.42749 -11.28387 -11.14876 -11.10476 -10.91314 -10.84009 -10.64723 -10.43780 -10.33028 -10.14703 -10.06772 -9.55353 -9.27307 -9.10197 -8.73485 -7.40823 -6.84901 -6.68283 -4.31320 2.37196 2.68228 2.85321 3.05688 3.09473 3.13906 3.23517 3.46243 3.64645 3.96957 4.28655 4.59565 4.68319 4.71105 4.93365 5.00620 5.10288 5.20232 5.22647 5.36101 5.41310 5.54890 5.71891 5.74325 5.78039 5.94852 6.04709 6.08356 6.18452 6.34801 6.42342 6.59939 6.67065 6.85162 6.99570 7.07677 7.11529 7.30928 7.67240 7.74981 8.00832 8.06171 8.10120 8.21829 8.38644 8.65276 8.80004 8.94105 9.03482 10.24585 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021652 B = 0.003367 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.883849 B = 8312.894899 C = 8952.380703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.122 3.878 10 C -0.169 4.169 11 C -0.096 4.096 12 C -0.224 4.224 13 C 0.156 3.844 14 N -0.667 5.667 15 C 0.525 3.475 16 O -0.515 6.515 17 C -0.099 4.099 18 H 0.103 0.897 19 C -0.109 4.109 20 C -0.129 4.129 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.053 4.053 24 H 0.109 0.891 25 C 0.486 3.514 26 O -0.499 6.499 27 O -0.521 6.521 28 C -0.246 4.246 29 H 0.279 0.721 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.397 0.603 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.407 0.593 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 -17.567 -4.909 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.119 3.881 10 C -0.188 4.188 11 C -0.115 4.115 12 C -0.245 4.245 13 C 0.064 3.936 14 N -0.310 5.310 15 C 0.312 3.688 16 O -0.390 6.390 17 C -0.120 4.120 18 H 0.121 0.879 19 C -0.147 4.147 20 C -0.167 4.167 21 C -0.152 4.152 22 C -0.165 4.165 23 C -0.073 4.073 24 H 0.127 0.873 25 C 0.327 3.673 26 O -0.385 6.385 27 O -0.333 6.333 28 C -0.268 4.268 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.231 0.769 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.265 0.735 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.385 -17.105 -4.948 17.860 hybrid contribution 0.491 0.676 0.513 0.980 sum 1.875 -16.429 -4.436 17.121 Atomic orbital electron populations 1.69848 1.07552 1.29047 1.35546 1.25875 0.94676 1.01179 0.92306 0.86347 0.80752 0.80917 0.78953 1.19678 1.20089 1.18485 1.19492 0.97920 0.91143 1.41072 0.90567 1.17353 0.90974 0.91313 0.88435 1.21343 0.99356 0.96824 1.01314 1.20586 0.98454 0.92879 0.99624 1.20381 1.01167 0.97344 1.05588 1.17418 0.96984 0.82845 0.96325 1.43416 1.09805 1.12173 1.65572 1.20071 0.86686 0.85396 0.76695 1.90612 1.15780 1.82421 1.50191 1.21309 0.97018 0.93787 0.99908 0.87927 1.21550 0.97709 1.02413 0.93030 1.21643 0.96668 1.00021 0.98356 1.21510 0.96902 0.99549 0.97194 1.21844 0.97379 1.04611 0.92689 1.20743 0.94205 1.00715 0.91600 0.87312 1.23199 0.78898 0.74874 0.90328 1.90749 1.68547 1.41919 1.37318 1.84481 1.39991 1.65005 1.43839 1.20673 1.05693 0.91478 1.08958 0.90976 0.86462 0.89243 0.87770 0.76912 0.90709 0.90544 0.91151 0.91301 0.91372 0.91977 0.87965 0.90973 0.73497 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.00 10.96 55.55 0.61 -20.39 16 2 C 0.08 1.96 5.14 -17.35 -0.09 1.87 16 3 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 7 C -0.47 -12.48 9.05 -37.74 -0.34 -12.82 16 8 H 0.08 1.94 7.90 -52.49 -0.41 1.53 16 9 C 0.12 3.32 5.57 -106.84 -0.60 2.72 16 10 C -0.17 -4.56 8.69 -38.84 -0.34 -4.90 16 11 C -0.10 -2.45 10.01 -39.69 -0.40 -2.85 16 12 C -0.22 -5.60 8.67 -39.10 -0.34 -5.94 16 13 C 0.16 3.63 6.27 -83.77 -0.53 3.10 16 14 N -0.67 -12.18 5.26 -9.91 -0.05 -12.23 16 15 C 0.52 9.14 4.37 -10.98 -0.05 9.10 16 16 O -0.51 -10.82 9.51 -15.88 -0.15 -10.97 16 17 C -0.10 -1.20 2.20 -91.77 -0.20 -1.40 16 18 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 19 C -0.11 -1.02 5.35 -26.73 -0.14 -1.16 16 20 C -0.13 -1.36 5.70 -26.73 -0.15 -1.52 16 21 C -0.11 -1.10 5.92 -26.73 -0.16 -1.26 16 22 C -0.13 -1.52 4.87 -26.73 -0.13 -1.65 16 23 C -0.05 -0.61 2.38 -91.76 -0.22 -0.83 16 24 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 25 C 0.49 6.76 6.65 36.01 0.24 7.00 16 26 O -0.50 -8.90 14.92 -25.91 -0.39 -9.28 16 27 O -0.52 -5.75 13.33 -39.24 -0.52 -6.28 16 28 C -0.25 -6.06 9.70 -38.68 -0.38 -6.44 16 29 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 30 H 0.12 3.25 6.17 -52.48 -0.32 2.92 16 31 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.10 2.67 6.38 -52.48 -0.33 2.33 16 33 H 0.40 5.82 8.09 -40.82 -0.33 5.49 16 34 H 0.07 0.65 7.46 -51.93 -0.39 0.26 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.98 7.22 -51.93 -0.37 0.61 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 1.62 5.51 -51.93 -0.29 1.33 16 41 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 42 H 0.41 3.01 9.10 45.56 0.41 3.42 16 43 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -33.61 344.62 -9.13 -42.74 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -4.97 Total: 14.41 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -3.81 Total: -16.97 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.56 Total: -32.63 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -1.06 Total: -26.53 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.61 -9.13 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313443604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.052 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds