Wall clock time and date at job start Tue Mar 31 2020 11:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 120.00276 * 2 1 4 4 H 1.48501 * 109.46829 * 274.69338 * 3 2 1 5 5 H 1.48500 * 109.47264 * 34.68671 * 3 2 1 6 6 H 1.48491 * 109.47411 * 154.69014 * 3 2 1 7 7 C 1.39931 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00459 * 162.43117 * 7 2 1 9 9 C 1.41414 * 119.99859 * 342.42795 * 7 2 1 10 10 C 1.40777 * 120.21013 * 335.19198 * 9 7 2 11 11 C 1.37633 * 119.88606 * 179.97438 * 10 9 7 12 12 C 1.38529 * 120.32332 * 0.02562 * 11 10 9 13 13 C 1.39256 * 120.42981 * 359.67971 * 12 11 10 14 14 N 1.39931 * 119.95196 * 180.30492 * 13 12 11 15 15 C 1.34780 * 120.00030 * 33.17698 * 14 13 12 16 16 O 1.21285 * 120.00005 * 5.17949 * 15 14 13 17 17 C 1.50700 * 119.99637 * 185.16836 * 15 14 13 18 18 H 1.09005 * 109.47195 * 60.01001 * 17 15 14 19 19 C 1.52996 * 109.47546 * 300.00280 * 17 15 14 20 20 C 1.53003 * 109.47319 * 300.00394 * 19 17 15 21 21 C 1.53007 * 109.46794 * 299.99841 * 20 19 17 22 22 C 1.52996 * 109.47058 * 59.99999 * 21 20 19 23 23 C 1.53003 * 109.47319 * 299.99680 * 22 21 20 24 24 H 1.08990 * 109.47311 * 300.00325 * 23 22 21 25 25 C 1.50704 * 109.47302 * 180.02562 * 23 22 21 26 26 O 1.20830 * 119.99883 * 240.00540 * 25 23 22 27 27 O 1.34224 * 119.99632 * 59.99975 * 25 23 22 28 28 C 1.38281 * 120.10055 * 0.59878 * 13 12 11 29 29 H 0.97006 * 119.99584 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.05683 * 359.95317 * 10 9 7 31 31 H 1.08002 * 119.83931 * 180.02562 * 11 10 9 32 32 H 1.08007 * 119.78703 * 180.02562 * 12 11 10 33 33 H 0.97004 * 119.99864 * 213.18577 * 14 13 12 34 34 H 1.08995 * 109.46746 * 60.00446 * 19 17 15 35 35 H 1.08999 * 109.46969 * 180.02562 * 19 17 15 36 36 H 1.08993 * 109.46908 * 59.99360 * 20 19 17 37 37 H 1.08995 * 109.47176 * 180.02562 * 20 19 17 38 38 H 1.08999 * 109.46705 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.47306 * 300.00112 * 21 20 19 40 40 H 1.09002 * 109.47429 * 59.99695 * 22 21 20 41 41 H 1.08995 * 109.47261 * 179.97438 * 22 21 20 42 42 H 0.96706 * 116.99583 * 179.97438 * 27 25 23 43 43 H 1.07997 * 120.16279 * 179.69803 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3906 2.1036 -1.3954 5 1 1.4929 2.6221 0.7968 6 1 3.5859 1.4136 0.5985 7 6 2.0080 -1.2118 0.0005 8 1 3.0502 -1.2338 -0.2818 9 6 1.3504 -2.4078 0.3708 10 6 0.2204 -2.3644 1.2093 11 6 -0.4148 -3.5325 1.5651 12 6 0.0526 -4.7517 1.1025 13 6 1.1656 -4.8096 0.2674 14 7 1.6253 -6.0461 -0.1992 15 6 0.7502 -7.0409 -0.4461 16 8 -0.4418 -6.8367 -0.3544 17 6 1.2529 -8.4070 -0.8363 18 1 1.8840 -8.8029 -0.0405 19 6 2.0665 -8.3014 -2.1277 20 6 1.1807 -7.7457 -3.2446 21 6 -0.0085 -8.6826 -3.4662 22 6 -0.8221 -8.7881 -2.1748 23 6 0.0637 -9.3439 -1.0579 24 1 0.4273 -10.3319 -1.3401 25 6 -0.7379 -9.4485 0.2140 26 8 -0.3936 -8.8362 1.1971 27 8 -1.8343 -10.2217 0.2545 28 6 1.8207 -3.6474 -0.0964 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1472 -1.4163 1.5731 31 1 -1.2819 -3.4983 2.2081 32 1 -0.4527 -5.6629 1.3867 33 1 2.5739 -6.1872 -0.3448 34 1 2.9137 -7.6340 -1.9698 35 1 2.4297 -9.2895 -2.4101 36 1 0.8172 -6.7577 -2.9623 37 1 1.7602 -7.6709 -4.1647 38 1 -0.6397 -8.2864 -4.2616 39 1 0.3550 -9.6706 -3.7484 40 1 -1.1856 -7.8001 -1.8925 41 1 -1.6695 -9.4552 -2.3328 42 1 -2.3155 -10.2574 1.0926 43 1 2.6869 -3.6916 -0.7400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313443604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:16 Heat of formation + Delta-G solvation = -144.147530 kcal Electronic energy + Delta-G solvation = -27101.326911 eV Core-core repulsion = 23302.323391 eV Total energy + Delta-G solvation = -3799.003521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.32044 -40.72187 -39.36353 -37.95136 -37.02476 -36.10613 -34.91606 -32.32300 -32.19416 -31.77982 -29.78188 -27.19384 -25.90885 -24.41584 -23.20575 -22.86342 -22.04290 -21.81743 -20.30081 -19.39408 -18.90833 -18.00926 -17.56615 -17.44071 -16.85782 -16.67031 -16.41400 -16.23519 -15.52805 -15.22762 -15.03671 -14.76875 -14.58293 -14.48254 -14.07654 -13.71136 -13.60389 -13.37658 -13.21177 -13.11153 -12.92844 -12.87614 -12.70214 -12.43914 -12.25605 -12.15979 -11.96559 -11.75876 -11.59283 -11.45701 -11.17784 -11.11168 -11.06502 -10.88342 -10.30079 -9.43431 -8.74549 -8.60127 -6.36228 0.89615 0.96173 1.33111 1.39346 1.49602 1.55891 1.91594 2.17641 2.20334 2.29886 2.75507 3.37880 3.63073 3.72268 3.83623 4.06090 4.13274 4.19097 4.37876 4.40860 4.42551 4.52485 4.56367 4.67122 4.78434 4.94755 4.99661 5.02218 5.05374 5.13459 5.16944 5.21243 5.24022 5.32451 5.33732 5.35332 5.55982 5.69521 5.76879 5.86313 6.07386 6.11327 6.29992 6.63617 6.74842 6.91954 6.99025 7.05247 7.41294 8.34069 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021652 B = 0.003367 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.883849 B = 8312.894899 C = 8952.380703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.496 4.496 8 H 0.083 0.917 9 C 0.097 3.903 10 C -0.197 4.197 11 C -0.100 4.100 12 C -0.241 4.241 13 C 0.170 3.830 14 N -0.664 5.664 15 C 0.518 3.482 16 O -0.553 6.553 17 C -0.090 4.090 18 H 0.120 0.880 19 C -0.104 4.104 20 C -0.132 4.132 21 C -0.109 4.109 22 C -0.125 4.125 23 C -0.053 4.053 24 H 0.158 0.842 25 C 0.483 3.517 26 O -0.548 6.548 27 O -0.514 6.514 28 C -0.256 4.256 29 H 0.288 0.712 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.416 0.584 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.023 0.977 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.421 0.579 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 -19.480 -6.607 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.526 4.526 8 H 0.101 0.899 9 C 0.094 3.906 10 C -0.217 4.217 11 C -0.119 4.119 12 C -0.262 4.262 13 C 0.077 3.923 14 N -0.309 5.309 15 C 0.307 3.693 16 O -0.431 6.431 17 C -0.112 4.112 18 H 0.137 0.863 19 C -0.141 4.141 20 C -0.169 4.169 21 C -0.146 4.146 22 C -0.163 4.163 23 C -0.072 4.072 24 H 0.175 0.825 25 C 0.326 3.674 26 O -0.438 6.438 27 O -0.327 6.327 28 C -0.278 4.278 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.253 0.747 34 H 0.100 0.900 35 H 0.139 0.861 36 H 0.042 0.958 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.282 0.718 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.426 -19.078 -6.664 20.497 hybrid contribution -0.275 1.165 1.017 1.571 sum 3.151 -17.913 -5.648 19.045 Atomic orbital electron populations 1.69918 1.09286 1.30583 1.35548 1.26835 0.95425 1.04767 0.91044 0.85151 0.79223 0.75674 0.79387 1.18624 1.19290 1.17867 1.19821 0.98423 0.92067 1.42264 0.89929 1.17751 0.91353 0.92762 0.88768 1.21258 1.00705 0.96570 1.03128 1.20766 0.98712 0.92831 0.99597 1.20408 1.02302 0.96644 1.06859 1.17439 0.95620 0.84747 0.94518 1.43424 1.11192 1.10788 1.65480 1.21193 0.86043 0.86910 0.75147 1.90609 1.17750 1.83329 1.51381 1.21410 0.97895 0.89837 1.02027 0.86257 1.21645 0.96893 1.05039 0.90534 1.21665 0.97527 0.97943 0.99794 1.21515 0.96186 1.01243 0.95643 1.21748 0.98370 1.02105 0.94040 1.20963 0.93484 1.02751 0.90014 0.82456 1.23822 0.79085 0.73892 0.90566 1.90734 1.69934 1.43916 1.39233 1.84449 1.39276 1.64020 1.44930 1.20854 1.06472 0.91182 1.09313 0.90167 0.87913 0.88013 0.88713 0.74718 0.89959 0.86111 0.95774 0.89254 0.91764 0.88231 0.92793 0.89961 0.71844 0.87012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.89 10.96 21.82 0.24 -44.65 16 2 C 0.03 1.75 5.14 85.25 0.44 2.19 16 3 Si 0.99 38.52 29.59 68.60 2.03 40.55 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.50 -27.13 9.05 23.46 0.21 -26.92 16 8 H 0.08 4.25 7.90 -2.91 -0.02 4.23 16 9 C 0.10 5.43 5.57 -21.30 -0.12 5.31 16 10 C -0.20 -11.18 8.69 22.75 0.20 -10.98 16 11 C -0.10 -5.36 10.01 22.20 0.22 -5.14 16 12 C -0.24 -12.59 8.67 22.58 0.20 -12.40 16 13 C 0.17 8.14 6.27 38.10 0.24 8.38 16 14 N -0.66 -24.29 5.26 -303.65 -1.60 -25.88 16 15 C 0.52 18.05 4.37 87.66 0.38 18.43 16 16 O -0.55 -24.17 9.51 17.45 0.17 -24.01 16 17 C -0.09 -1.98 2.20 -11.54 -0.03 -2.00 16 18 H 0.12 2.28 8.10 -2.38 -0.02 2.26 16 19 C -0.10 -1.51 5.35 30.59 0.16 -1.34 16 20 C -0.13 -2.45 5.70 30.60 0.17 -2.27 16 21 C -0.11 -1.77 5.92 30.60 0.18 -1.59 16 22 C -0.13 -2.77 4.87 30.59 0.15 -2.62 16 23 C -0.05 -1.07 2.38 -11.54 -0.03 -1.10 16 24 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 25 C 0.48 12.92 6.65 71.24 0.47 13.40 16 26 O -0.55 -19.70 14.92 28.79 0.43 -19.27 16 27 O -0.51 -10.65 13.33 -51.36 -0.68 -11.34 16 28 C -0.26 -12.92 9.70 22.85 0.22 -12.70 16 29 H 0.29 14.09 8.30 -92.70 -0.77 13.32 16 30 H 0.10 6.02 6.17 -2.91 -0.02 6.00 16 31 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 32 H 0.09 5.11 6.38 -2.91 -0.02 5.09 16 33 H 0.42 11.73 8.09 -92.71 -0.75 10.98 16 34 H 0.08 1.11 7.46 -2.39 -0.02 1.09 16 35 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.02 0.66 7.22 -2.39 -0.02 0.64 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.05 1.76 5.51 -2.39 -0.01 1.74 16 41 H 0.08 1.61 8.11 -2.39 -0.02 1.59 16 42 H 0.42 5.91 9.10 -74.05 -0.67 5.23 16 43 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -78.66 344.62 3.30 -75.36 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -0.36 Total: 40.59 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 3.08 Total: -31.36 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.36 Total: -70.53 kcal Atomic # 8 Polarization: -54.52 SS G_CDS: -0.09 Total: -54.61 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -78.66 3.30 -75.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313443604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.788 kcal (2) G-P(sol) polarization free energy of solvation -78.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds