Wall clock time and date at job start Tue Mar 31 2020 11:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 C 1.53001 * 109.47207 * 299.99218 * 12 10 9 14 14 C 1.52998 * 109.47157 * 180.02562 * 13 12 10 15 15 H 1.09009 * 109.46771 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47365 * 299.99937 * 14 13 12 17 17 C 1.53007 * 109.46626 * 59.99956 * 16 14 13 18 18 H 1.09001 * 109.47100 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47490 * 59.99635 * 12 10 9 20 20 C 1.52999 * 109.46946 * 60.00310 * 17 16 14 21 21 C 1.53003 * 109.46917 * 299.99798 * 20 17 16 22 22 C 1.52999 * 109.46917 * 180.02562 * 21 20 17 23 23 F 1.39898 * 109.47518 * 179.97438 * 22 21 20 24 24 F 1.39899 * 109.47644 * 299.99871 * 22 21 20 25 25 F 1.39911 * 109.47182 * 60.00012 * 22 21 20 26 26 C 1.52993 * 109.47239 * 60.00359 * 21 20 17 27 27 C 1.52998 * 109.46809 * 299.99904 * 21 20 17 28 28 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47406 * 300.00436 * 13 12 10 31 31 H 1.09001 * 109.47038 * 60.00421 * 13 12 10 32 32 H 1.08990 * 109.47234 * 180.02562 * 16 14 13 33 33 H 1.09002 * 109.47245 * 300.01080 * 16 14 13 34 34 H 1.09001 * 109.46983 * 299.99719 * 19 12 10 35 35 H 1.08995 * 109.47139 * 60.00165 * 19 12 10 36 36 H 1.08995 * 109.47276 * 179.97438 * 20 17 16 37 37 H 1.09003 * 109.47160 * 59.99659 * 20 17 16 38 38 H 1.08995 * 109.47584 * 59.99515 * 26 21 20 39 39 H 1.09001 * 109.47191 * 179.97438 * 26 21 20 40 40 H 1.09000 * 109.47250 * 299.99648 * 27 21 20 41 41 H 1.09007 * 109.46897 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 6 0.3637 -4.9377 1.2623 14 6 -0.4009 -6.2629 1.2690 15 1 -1.0282 -6.3160 2.1589 16 6 -1.2801 -6.3508 0.0199 17 6 -0.4000 -6.2760 -1.2295 18 1 -1.0263 -6.3382 -2.1194 19 6 0.3645 -4.9502 -1.2361 20 6 0.5946 -7.4386 -1.2230 21 6 1.4737 -7.3508 0.0262 22 6 2.4686 -8.5130 0.0323 23 9 3.2729 -8.4324 1.1742 24 9 1.7700 -9.7251 0.0381 25 9 3.2734 -8.4441 -1.1101 26 6 0.5936 -7.4256 1.2754 27 6 2.2382 -6.0255 0.0194 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.9900 -4.8755 2.1522 31 1 -0.3447 -4.1092 1.2579 32 1 -1.8251 -7.2947 0.0249 33 1 -1.9886 -5.5225 0.0152 34 1 -0.3438 -4.1218 -1.2405 35 1 0.9915 -4.8970 -2.1261 36 1 1.2212 -7.3857 -2.1132 37 1 0.0498 -8.3828 -1.2182 38 1 0.0489 -8.3696 1.2802 39 1 1.2200 -7.3634 2.1654 40 1 2.8653 -5.9723 -0.8706 41 1 2.8649 -5.9631 0.9092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336378639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:39 Heat of formation + Delta-G solvation = -225.126234 kcal Electronic energy + Delta-G solvation = -29127.562268 eV Core-core repulsion = 24783.190507 eV Total energy + Delta-G solvation = -4344.371761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.06466 -47.53657 -47.49067 -41.57602 -37.90767 -34.09029 -33.50016 -32.65950 -32.43646 -31.04653 -25.99604 -25.98429 -25.74857 -25.04671 -22.34334 -21.57811 -21.09076 -19.13682 -18.20629 -18.15227 -18.10441 -17.53163 -16.82690 -15.51699 -14.77217 -14.73989 -14.63402 -14.26395 -14.19349 -14.15180 -14.05207 -14.00277 -13.84866 -13.67510 -13.66234 -13.38677 -13.25784 -13.00719 -12.57564 -12.41758 -12.23580 -11.86475 -11.54499 -11.12165 -10.95770 -10.94628 -10.80979 -10.80237 -10.73388 -10.41071 -10.30564 -10.16622 -9.80470 -9.65406 -9.52229 -8.28030 -7.99129 -6.44676 -3.85189 2.80202 3.15768 3.25083 3.30891 3.79032 3.84504 3.99608 4.02318 4.17987 4.54380 4.60422 4.68448 5.03644 5.07094 5.12379 5.13357 5.15198 5.19287 5.25138 5.29110 5.40498 5.50166 5.62380 5.68814 5.79505 5.81824 5.91105 5.93397 6.04188 6.11171 6.18784 6.20331 6.28319 6.29575 6.42533 6.50791 6.63276 6.68058 7.52775 8.03312 8.57776 9.14913 9.51920 10.03011 10.72796 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.022958 B = 0.004266 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.304611 B = 6562.051784 C = 7115.632176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.556 5.556 10 C 0.450 3.550 11 O -0.594 6.594 12 C -0.056 4.056 13 C -0.104 4.104 14 C -0.079 4.079 15 H 0.079 0.921 16 C -0.111 4.111 17 C -0.079 4.079 18 H 0.079 0.921 19 C -0.104 4.104 20 C -0.105 4.105 21 C -0.097 4.097 22 C 0.456 3.544 23 F -0.182 7.182 24 F -0.187 7.187 25 F -0.182 7.182 26 C -0.105 4.105 27 C -0.080 4.080 28 H 0.272 0.728 29 H 0.393 0.607 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 -15.830 0.071 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.177 4.177 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.191 5.191 10 C 0.236 3.764 11 O -0.479 6.479 12 C -0.059 4.059 13 C -0.142 4.142 14 C -0.097 4.097 15 H 0.097 0.903 16 C -0.148 4.148 17 C -0.097 4.097 18 H 0.097 0.903 19 C -0.142 4.142 20 C -0.143 4.143 21 C -0.098 4.098 22 C 0.402 3.598 23 F -0.164 7.164 24 F -0.169 7.169 25 F -0.164 7.164 26 C -0.143 4.143 27 C -0.117 4.117 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.087 -15.667 0.075 16.192 hybrid contribution 0.101 0.640 -0.009 0.648 sum -3.986 -15.027 0.066 15.547 Atomic orbital electron populations 1.69606 1.05914 1.28189 1.50427 1.25243 0.95611 0.99674 0.97211 0.85878 0.79285 0.80855 0.78415 1.20397 1.20914 1.19416 1.19730 0.93399 0.82309 1.47634 0.87957 1.41864 1.09197 1.04477 1.63576 1.19639 0.87915 0.84550 0.84303 1.90523 1.13915 1.87192 1.56266 1.20448 0.95148 0.94126 0.96185 1.21618 0.98315 0.97028 0.97225 1.21017 0.95936 0.94210 0.98535 0.90301 1.21599 0.97346 1.01986 0.93872 1.21025 0.95935 0.94212 0.98529 0.90304 1.21625 0.98319 0.97024 0.97216 1.21609 0.97513 0.99631 0.95536 1.21838 0.94719 0.93165 1.00102 1.20666 0.81585 0.84133 0.73386 1.93162 1.75511 1.96332 1.51346 1.93133 1.78885 1.48606 1.96241 1.93165 1.75491 1.96414 1.51289 1.21606 0.97502 0.99653 0.95524 1.21299 0.96563 0.89297 1.04586 0.91847 0.77358 0.91353 0.90719 0.91897 0.91100 0.90718 0.91354 0.90651 0.90920 0.90921 0.90651 0.90229 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.89 13.05 55.50 0.72 -23.16 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.66 5.07 -10.96 -0.06 -13.72 16 10 C 0.45 10.35 6.43 -10.99 -0.07 10.28 16 11 O -0.59 -15.96 15.56 5.55 0.09 -15.87 16 12 C -0.06 -0.94 0.61 -155.66 -0.10 -1.04 16 13 C -0.10 -1.54 4.37 -26.73 -0.12 -1.66 16 14 C -0.08 -0.90 3.19 -90.62 -0.29 -1.19 16 15 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 16 C -0.11 -1.15 5.19 -26.73 -0.14 -1.29 16 17 C -0.08 -0.90 3.20 -90.59 -0.29 -1.19 16 18 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.10 -1.54 4.37 -26.71 -0.12 -1.66 16 20 C -0.11 -1.20 4.23 -26.73 -0.11 -1.31 16 21 C -0.10 -1.24 0.33 -154.51 -0.05 -1.29 16 22 C 0.46 6.07 2.22 37.16 0.08 6.15 16 23 F -0.18 -2.59 16.28 2.25 0.04 -2.56 16 24 F -0.19 -2.33 16.28 2.25 0.04 -2.30 16 25 F -0.18 -2.59 16.28 2.25 0.04 -2.56 16 26 C -0.11 -1.20 4.23 -26.74 -0.11 -1.31 16 27 C -0.08 -1.29 2.80 -26.73 -0.07 -1.36 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.39 9.21 6.73 -40.82 -0.27 8.93 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.15 7.56 -51.93 -0.39 0.76 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.15 7.56 -51.93 -0.39 0.76 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.88 7.80 -51.93 -0.41 0.47 16 37 H 0.07 0.72 7.80 -51.93 -0.41 0.32 16 38 H 0.07 0.72 7.80 -51.93 -0.41 0.32 16 39 H 0.07 0.88 7.80 -51.93 -0.41 0.47 16 40 H 0.08 1.40 7.76 -51.93 -0.40 0.99 16 41 H 0.08 1.40 7.76 -51.93 -0.40 0.99 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -29.45 322.65 -6.46 -35.91 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.53 Total: 8.35 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.63 Total: -4.72 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.67 Total: -36.88 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.09 Total: -15.87 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 0.11 Total: -7.41 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.45 -6.46 -35.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336378639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.214 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds