Wall clock time and date at job start Tue Mar 31 2020 11:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 C 1.53001 * 109.47207 * 299.99218 * 12 10 9 14 14 C 1.52998 * 109.47157 * 180.02562 * 13 12 10 15 15 H 1.09009 * 109.46771 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47365 * 299.99937 * 14 13 12 17 17 C 1.53007 * 109.46626 * 59.99956 * 16 14 13 18 18 H 1.09001 * 109.47100 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47490 * 59.99635 * 12 10 9 20 20 C 1.52999 * 109.46946 * 60.00310 * 17 16 14 21 21 C 1.53003 * 109.46917 * 299.99798 * 20 17 16 22 22 C 1.52999 * 109.46917 * 180.02562 * 21 20 17 23 23 F 1.39898 * 109.47518 * 179.97438 * 22 21 20 24 24 F 1.39899 * 109.47644 * 299.99871 * 22 21 20 25 25 F 1.39911 * 109.47182 * 60.00012 * 22 21 20 26 26 C 1.52993 * 109.47239 * 60.00359 * 21 20 17 27 27 C 1.52998 * 109.46809 * 299.99904 * 21 20 17 28 28 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47406 * 300.00436 * 13 12 10 31 31 H 1.09001 * 109.47038 * 60.00421 * 13 12 10 32 32 H 1.08990 * 109.47234 * 180.02562 * 16 14 13 33 33 H 1.09002 * 109.47245 * 300.01080 * 16 14 13 34 34 H 1.09001 * 109.46983 * 299.99719 * 19 12 10 35 35 H 1.08995 * 109.47139 * 60.00165 * 19 12 10 36 36 H 1.08995 * 109.47276 * 179.97438 * 20 17 16 37 37 H 1.09003 * 109.47160 * 59.99659 * 20 17 16 38 38 H 1.08995 * 109.47584 * 59.99515 * 26 21 20 39 39 H 1.09001 * 109.47191 * 179.97438 * 26 21 20 40 40 H 1.09000 * 109.47250 * 299.99648 * 27 21 20 41 41 H 1.09007 * 109.46897 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 6 0.3637 -4.9377 1.2623 14 6 -0.4009 -6.2629 1.2690 15 1 -1.0282 -6.3160 2.1589 16 6 -1.2801 -6.3508 0.0199 17 6 -0.4000 -6.2760 -1.2295 18 1 -1.0263 -6.3382 -2.1194 19 6 0.3645 -4.9502 -1.2361 20 6 0.5946 -7.4386 -1.2230 21 6 1.4737 -7.3508 0.0262 22 6 2.4686 -8.5130 0.0323 23 9 3.2729 -8.4324 1.1742 24 9 1.7700 -9.7251 0.0381 25 9 3.2734 -8.4441 -1.1101 26 6 0.5936 -7.4256 1.2754 27 6 2.2382 -6.0255 0.0194 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.9900 -4.8755 2.1522 31 1 -0.3447 -4.1092 1.2579 32 1 -1.8251 -7.2947 0.0249 33 1 -1.9886 -5.5225 0.0152 34 1 -0.3438 -4.1218 -1.2405 35 1 0.9915 -4.8970 -2.1261 36 1 1.2212 -7.3857 -2.1132 37 1 0.0498 -8.3828 -1.2182 38 1 0.0489 -8.3696 1.2802 39 1 1.2200 -7.3634 2.1654 40 1 2.8653 -5.9723 -0.8706 41 1 2.8649 -5.9631 0.9092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336378639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:38 Heat of formation + Delta-G solvation = -241.876918 kcal Electronic energy + Delta-G solvation = -29128.288632 eV Core-core repulsion = 24783.190507 eV Total energy + Delta-G solvation = -4345.098125 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.13931 -48.60431 -48.57965 -42.74799 -39.71741 -36.07365 -34.69598 -33.76562 -33.65180 -32.97837 -27.42857 -27.05673 -26.79796 -26.67697 -23.87442 -22.57366 -22.14005 -20.76403 -19.99998 -19.23072 -19.21079 -18.92937 -17.96399 -17.19033 -16.51773 -15.90540 -15.86941 -15.76716 -15.58574 -15.36339 -15.15950 -15.12618 -15.02200 -14.79010 -14.75697 -14.74108 -14.30206 -14.19722 -13.93553 -13.88631 -13.49502 -13.38489 -12.94610 -12.93632 -12.46357 -12.15254 -12.07234 -11.98078 -11.92185 -11.83694 -11.78198 -11.53468 -11.42993 -10.91487 -10.67653 -10.10139 -10.02985 -8.48816 -5.97565 1.35665 1.40184 1.52419 1.73572 2.01272 2.27837 2.72644 2.85398 2.99642 3.17064 3.25484 3.55741 3.60760 3.73621 3.99093 4.02697 4.06390 4.14578 4.15934 4.20654 4.22939 4.33261 4.47214 4.70492 4.74909 4.75461 4.82362 4.96301 4.98633 5.02510 5.05303 5.08037 5.16423 5.22828 5.38263 5.38825 5.44998 5.49945 5.51322 5.97975 6.56683 7.09812 7.53372 8.08861 8.68214 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.022958 B = 0.004266 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.304611 B = 6562.051784 C = 7115.632176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 0.990 3.010 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.276 1.276 7 C -0.339 4.339 8 H 0.075 0.925 9 N -0.561 5.561 10 C 0.443 3.557 11 O -0.640 6.640 12 C -0.048 4.048 13 C -0.103 4.103 14 C -0.071 4.071 15 H 0.104 0.896 16 C -0.108 4.108 17 C -0.071 4.071 18 H 0.104 0.896 19 C -0.103 4.103 20 C -0.105 4.105 21 C -0.090 4.090 22 C 0.457 3.543 23 F -0.191 7.191 24 F -0.176 7.176 25 F -0.191 7.191 26 C -0.105 4.105 27 C -0.075 4.075 28 H 0.279 0.721 29 H 0.397 0.603 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.326 -17.367 0.062 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.207 4.207 3 Si 0.814 3.186 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.093 0.907 9 N -0.196 5.196 10 C 0.231 3.769 11 O -0.529 6.529 12 C -0.051 4.051 13 C -0.141 4.141 14 C -0.089 4.089 15 H 0.123 0.877 16 C -0.145 4.145 17 C -0.089 4.089 18 H 0.123 0.877 19 C -0.141 4.141 20 C -0.142 4.142 21 C -0.091 4.091 22 C 0.403 3.597 23 F -0.172 7.172 24 F -0.157 7.157 25 F -0.172 7.172 26 C -0.142 4.142 27 C -0.113 4.113 28 H 0.088 0.912 29 H 0.232 0.768 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.654 -17.214 0.064 18.455 hybrid contribution 0.969 1.140 -0.007 1.496 sum -5.685 -16.074 0.057 17.050 Atomic orbital electron populations 1.69656 1.06681 1.29377 1.49823 1.25977 0.96528 1.02167 0.96049 0.84977 0.77905 0.77074 0.78684 1.19611 1.19269 1.20048 1.19668 0.92629 0.84208 1.50331 0.90694 1.41878 1.09272 1.04438 1.64042 1.20831 0.87779 0.86263 0.82001 1.90479 1.16331 1.88229 1.57833 1.20391 0.95393 0.90482 0.98836 1.21619 0.97820 0.99601 0.95043 1.21028 0.95833 0.91419 1.00620 0.87748 1.21643 0.96887 1.03989 0.91994 1.21036 0.95830 0.91420 1.00613 0.87747 1.21626 0.97827 0.99595 0.95035 1.21682 0.97313 1.01016 0.94198 1.21802 0.94570 0.90501 1.02265 1.20714 0.81455 0.84662 0.72868 1.93150 1.75861 1.96410 1.51793 1.93152 1.78501 1.47892 1.96163 1.93153 1.75841 1.96490 1.51734 1.21679 0.97301 1.01040 0.94185 1.21158 0.96358 0.91528 1.02287 0.91156 0.76831 0.92967 0.91452 0.88498 0.90764 0.91444 0.92953 0.91248 0.87848 0.87849 0.91254 0.92598 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.63 13.05 21.66 0.28 -48.35 16 2 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 3 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.34 -19.41 9.68 84.04 0.81 -18.60 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 N -0.56 -28.95 5.07 -306.98 -1.56 -30.50 16 10 C 0.44 21.64 6.43 87.66 0.56 22.20 16 11 O -0.64 -36.95 15.56 -3.07 -0.05 -37.00 16 12 C -0.05 -1.67 0.61 -52.93 -0.03 -1.70 16 13 C -0.10 -3.03 4.37 30.59 0.13 -2.89 16 14 C -0.07 -1.39 3.19 -10.79 -0.03 -1.42 16 15 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 16 C -0.11 -1.76 5.19 30.60 0.16 -1.60 16 17 C -0.07 -1.39 3.20 -10.78 -0.03 -1.42 16 18 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 19 C -0.10 -3.02 4.37 30.61 0.13 -2.89 16 20 C -0.10 -2.06 4.23 30.60 0.13 -1.93 16 21 C -0.09 -2.16 0.33 -52.18 -0.02 -2.18 16 22 C 0.46 11.51 2.22 71.98 0.16 11.67 16 23 F -0.19 -5.35 16.28 44.97 0.73 -4.62 16 24 F -0.18 -3.83 16.28 44.97 0.73 -3.10 16 25 F -0.19 -5.35 16.28 44.97 0.73 -4.62 16 26 C -0.10 -2.06 4.23 30.59 0.13 -1.93 16 27 C -0.08 -2.52 2.80 30.59 0.09 -2.43 16 28 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.40 19.35 6.73 -92.71 -0.62 18.73 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 2.07 7.56 -2.39 -0.02 2.05 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 2.07 7.56 -2.39 -0.02 2.05 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.07 1.47 7.80 -2.39 -0.02 1.45 16 37 H 0.10 1.50 7.80 -2.39 -0.02 1.48 16 38 H 0.10 1.50 7.80 -2.39 -0.02 1.48 16 39 H 0.07 1.47 7.80 -2.39 -0.02 1.45 16 40 H 0.06 2.09 7.76 -2.39 -0.02 2.07 16 41 H 0.06 2.09 7.76 -2.38 -0.02 2.07 16 Total: -1.00 -67.30 322.65 6.00 -61.30 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.44 Total: 26.96 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 2.66 Total: -5.01 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -1.27 Total: -78.85 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -0.05 Total: -37.00 kcal Atomic # 9 Polarization: -14.53 SS G_CDS: 2.20 Total: -12.34 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -67.30 6.00 -61.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336378639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.579 kcal (2) G-P(sol) polarization free energy of solvation -67.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds