Wall clock time and date at job start Tue Mar 31 2020 11:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38293 * 119.93437 * 2 1 4 4 C 1.38102 * 120.06508 * 179.97438 * 3 2 1 5 5 C 1.38840 * 119.93236 * 0.02575 * 4 3 2 6 6 N 1.40250 * 120.06304 * 180.02562 * 5 4 3 7 7 C 1.36974 * 127.17931 * 65.15441 * 6 5 4 8 8 N 1.30310 * 107.28949 * 180.28063 * 7 6 5 9 9 N 1.28513 * 110.14962 * 359.73486 * 8 7 6 10 10 C 1.31296 * 109.91893 * 0.02562 * 9 8 7 11 11 S 1.76192 * 126.49973 * 180.02562 * 10 9 8 12 12 C 1.80994 * 100.00241 * 0.02562 * 11 10 9 13 13 H 1.09001 * 109.47264 * 305.00446 * 12 11 10 14 14 C 1.52997 * 109.47141 * 65.00188 * 12 11 10 15 15 C 1.53006 * 109.47367 * 185.00355 * 12 11 10 16 16 C 1.50699 * 109.47053 * 64.99790 * 15 12 11 17 17 H 1.07995 * 119.99640 * 0.02562 * 16 15 12 18 18 C 1.37872 * 119.99593 * 179.97438 * 16 15 12 19 19 N 1.31519 * 120.00495 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99694 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47382 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46968 * 120.00359 * 20 18 16 23 23 H 1.48504 * 109.47403 * 240.00151 * 20 18 16 24 24 C 1.38793 * 119.87255 * 0.27197 * 5 4 3 25 25 C 1.50701 * 120.03516 * 179.72256 * 24 5 4 26 26 C 1.38151 * 119.93296 * 359.40728 * 24 5 4 27 27 H 1.08997 * 109.47170 * 89.99813 * 1 2 3 28 28 H 1.08999 * 109.47032 * 209.99711 * 1 2 3 29 29 H 1.09004 * 109.46906 * 330.00282 * 1 2 3 30 30 H 1.08003 * 119.97077 * 0.02562 * 3 2 1 31 31 H 1.07994 * 120.03799 * 180.02562 * 4 3 2 32 32 H 1.07994 * 126.35458 * 0.03241 * 7 6 5 33 33 H 1.09001 * 109.47289 * 60.00267 * 14 12 11 34 34 H 1.09004 * 109.47261 * 180.02562 * 14 12 11 35 35 H 1.09002 * 109.47153 * 300.00183 * 14 12 11 36 36 H 1.08997 * 109.47395 * 185.00396 * 15 12 11 37 37 H 1.09004 * 109.46579 * 304.99673 * 15 12 11 38 38 H 0.97000 * 120.00169 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.46884 * 90.00088 * 25 24 5 40 40 H 1.08994 * 109.47165 * 210.00111 * 25 24 5 41 41 H 1.09002 * 109.47076 * 330.00600 * 25 24 5 42 42 H 1.07995 * 119.97056 * 180.31829 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5782 1.2016 0.0005 5 6 4.2737 0.0000 0.0005 6 7 5.6762 0.0000 0.0016 7 6 6.5032 0.4581 0.9928 8 7 7.7289 0.2775 0.5888 9 7 7.7356 -0.2635 -0.5769 10 6 6.5036 -0.4598 -0.9860 11 16 6.0096 -1.1746 -2.5189 12 6 7.6325 -1.5064 -3.2484 13 1 8.2158 -0.5859 -3.2708 14 6 8.3650 -2.5540 -2.4078 15 6 7.4530 -2.0313 -4.6744 16 6 6.8425 -0.9538 -5.5331 17 1 6.6066 0.0091 -5.1048 18 6 6.5862 -1.1972 -6.8658 19 7 6.8740 -2.3697 -7.3875 20 14 5.8302 0.1386 -7.9305 21 1 5.6037 1.3560 -7.1109 22 1 6.7516 0.4603 -9.0497 23 1 4.5346 -0.3384 -8.4775 24 6 3.5784 -1.2012 -0.0057 25 6 4.3296 -2.5076 -0.0121 26 6 2.1969 -1.1981 0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6556 2.1329 0.0004 31 1 4.1166 2.1377 0.0010 32 1 6.1963 0.8924 1.9327 33 1 7.7818 -3.4745 -2.3853 34 1 9.3426 -2.7534 -2.8469 35 1 8.4929 -2.1800 -1.3919 36 1 8.4233 -2.3147 -5.0821 37 1 6.7963 -2.9012 -4.6613 38 1 6.6934 -2.5409 -8.3250 39 1 4.5104 -2.8277 1.0141 40 1 3.7395 -3.2636 -0.5299 41 1 5.2825 -2.3763 -0.5249 42 1 1.6553 -2.1324 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340666454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:05 Heat of formation + Delta-G solvation = 90.865819 kcal Electronic energy + Delta-G solvation = -23915.969472 eV Core-core repulsion = 20602.202517 eV Total energy + Delta-G solvation = -3313.766955 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.83717 -39.79278 -35.40119 -34.56069 -33.01412 -32.12125 -31.62680 -30.42839 -27.50304 -27.42966 -26.85035 -23.37742 -23.29684 -22.63346 -21.85477 -21.14615 -20.28877 -18.47114 -16.64776 -16.39861 -16.32183 -15.44429 -15.29896 -14.95472 -14.67892 -14.44017 -14.32695 -14.20237 -13.48122 -13.40912 -13.03151 -12.77195 -12.61319 -12.38215 -12.04176 -11.89782 -11.78025 -11.58986 -11.48667 -11.35475 -11.10593 -10.81666 -10.75914 -10.54778 -10.42793 -10.31579 -9.77896 -9.48185 -9.44275 -9.16010 -9.08351 -8.73230 -8.41963 -7.08311 -6.06680 -4.08925 0.76291 1.05641 1.58605 1.83990 2.67689 2.92730 2.99406 3.29238 3.30242 3.37066 3.42502 4.42732 4.46423 4.51868 4.53966 4.61703 4.96243 4.99176 5.19360 5.27946 5.30865 5.31362 5.41011 5.44250 5.52120 5.60314 5.66694 5.74017 5.75095 5.87478 5.94503 6.04429 6.10346 6.17262 6.24088 6.26598 6.52306 6.56799 6.62800 6.81240 7.04631 7.49286 7.53493 7.90642 8.26822 8.79870 8.96292 9.55701 11.04325 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.004631 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.018330 B = 6044.608761 C = 7419.751143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.068 4.068 3 C -0.117 4.117 4 C -0.092 4.092 5 C 0.101 3.899 6 N -0.425 5.425 7 C 0.149 3.851 8 N -0.288 5.288 9 N -0.296 5.296 10 C 0.172 3.828 11 S 0.028 5.972 12 C -0.060 4.060 13 H 0.091 0.909 14 C -0.147 4.147 15 C 0.037 3.963 16 C -0.522 4.522 17 H 0.063 0.937 18 C 0.061 3.939 19 N -0.893 5.893 20 Si 0.890 3.110 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.050 4.050 25 C -0.133 4.133 26 C -0.111 4.111 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.216 0.784 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.041 0.959 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.032 2.995 17.970 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.068 4.068 3 C -0.136 4.136 4 C -0.111 4.111 5 C 0.010 3.990 6 N -0.117 5.117 7 C -0.140 4.140 8 N -0.126 5.126 9 N -0.139 5.139 10 C -0.200 4.200 11 S 0.259 5.741 12 C -0.190 4.190 13 H 0.109 0.891 14 C -0.207 4.207 15 C -0.001 4.001 16 C -0.561 4.561 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.052 4.052 25 C -0.190 4.190 26 C -0.130 4.130 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.232 0.768 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.535 2.713 17.365 21.023 hybrid contribution -0.533 1.123 -0.141 1.251 sum -12.069 3.836 17.224 21.378 Atomic orbital electron populations 1.20839 0.90614 1.02975 1.02891 1.20060 0.96513 0.92925 0.97310 1.20880 0.92967 0.98093 1.01666 1.21094 0.94593 0.96554 0.98893 1.17395 0.79445 0.94229 1.07898 1.43947 1.05282 1.47821 1.14680 1.26648 0.86455 1.04509 0.96413 1.73901 1.17859 1.14653 1.06166 1.74717 1.15434 1.17929 1.05852 1.27934 0.89301 1.03983 0.98781 1.86239 1.14801 1.72129 1.00958 1.23702 0.92092 1.02577 1.00585 0.89074 1.22126 1.00334 0.98124 1.00077 1.19100 0.98599 0.96914 0.85520 1.21298 1.41003 0.99402 0.94399 0.91854 1.24970 0.95581 0.95473 0.98002 1.69962 1.47961 1.21774 1.13490 0.86552 0.78953 0.82245 0.80468 1.19558 1.20953 1.20949 1.19953 0.93990 0.94321 0.96895 1.21124 1.01862 0.93484 1.02577 1.20863 0.92391 0.98227 1.01498 0.90558 0.91244 0.91304 0.85062 0.85222 0.76758 0.92661 0.91876 0.91742 0.94062 0.95489 0.92916 0.91056 0.90231 0.89823 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.07 -0.62 5.88 -104.59 -0.62 -1.23 16 3 C -0.12 -1.10 9.69 -39.61 -0.38 -1.49 16 4 C -0.09 -1.03 9.93 -39.41 -0.39 -1.43 16 5 C 0.10 1.34 5.59 -83.58 -0.47 0.87 16 6 N -0.43 -6.46 2.45 -61.86 -0.15 -6.62 16 7 C 0.15 2.10 12.72 -88.74 -1.13 0.97 16 8 N -0.29 -5.11 12.17 29.94 0.36 -4.74 16 9 N -0.30 -5.77 9.74 30.73 0.30 -5.47 16 10 C 0.17 3.14 6.26 -88.08 -0.55 2.59 16 11 S 0.03 0.55 18.96 -107.50 -2.04 -1.49 16 12 C -0.06 -1.28 2.29 -26.73 -0.06 -1.34 16 13 H 0.09 2.04 8.14 -51.92 -0.42 1.61 16 14 C -0.15 -2.73 9.01 37.16 0.33 -2.39 16 15 C 0.04 0.93 4.44 -27.88 -0.12 0.81 16 16 C -0.52 -14.31 8.53 -34.44 -0.29 -14.60 16 17 H 0.06 1.73 7.60 -52.49 -0.40 1.33 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 20 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C -0.05 -0.61 5.88 -104.45 -0.61 -1.23 16 25 C -0.13 -1.63 9.60 36.01 0.35 -1.28 16 26 C -0.11 -1.13 9.35 -39.61 -0.37 -1.50 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 29 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 31 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.22 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.19 5.91 -51.93 -0.31 0.89 16 36 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 41 H 0.08 1.24 4.25 -51.93 -0.22 1.02 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -31.92 361.68 -10.39 -42.31 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.97 Total: -0.57 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -4.06 Total: -20.00 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 1.25 Total: -42.17 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 0.55 SS G_CDS: -2.04 Total: -1.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.92 -10.39 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340666454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.180 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds