Wall clock time and date at job start Tue Mar 31 2020 11:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38293 * 119.93437 * 2 1 4 4 C 1.38102 * 120.06508 * 179.97438 * 3 2 1 5 5 C 1.38840 * 119.93236 * 0.02575 * 4 3 2 6 6 N 1.40250 * 120.06304 * 180.02562 * 5 4 3 7 7 C 1.36974 * 127.17931 * 65.15441 * 6 5 4 8 8 N 1.30310 * 107.28949 * 180.28063 * 7 6 5 9 9 N 1.28513 * 110.14962 * 359.73486 * 8 7 6 10 10 C 1.31296 * 109.91893 * 0.02562 * 9 8 7 11 11 S 1.76192 * 126.49973 * 180.02562 * 10 9 8 12 12 C 1.80994 * 100.00241 * 0.02562 * 11 10 9 13 13 H 1.09001 * 109.47264 * 305.00446 * 12 11 10 14 14 C 1.52997 * 109.47141 * 65.00188 * 12 11 10 15 15 C 1.53006 * 109.47367 * 185.00355 * 12 11 10 16 16 C 1.50699 * 109.47053 * 64.99790 * 15 12 11 17 17 H 1.07995 * 119.99640 * 0.02562 * 16 15 12 18 18 C 1.37872 * 119.99593 * 179.97438 * 16 15 12 19 19 N 1.31519 * 120.00495 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99694 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47382 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46968 * 120.00359 * 20 18 16 23 23 H 1.48504 * 109.47403 * 240.00151 * 20 18 16 24 24 C 1.38793 * 119.87255 * 0.27197 * 5 4 3 25 25 C 1.50701 * 120.03516 * 179.72256 * 24 5 4 26 26 C 1.38151 * 119.93296 * 359.40728 * 24 5 4 27 27 H 1.08997 * 109.47170 * 89.99813 * 1 2 3 28 28 H 1.08999 * 109.47032 * 209.99711 * 1 2 3 29 29 H 1.09004 * 109.46906 * 330.00282 * 1 2 3 30 30 H 1.08003 * 119.97077 * 0.02562 * 3 2 1 31 31 H 1.07994 * 120.03799 * 180.02562 * 4 3 2 32 32 H 1.07994 * 126.35458 * 0.03241 * 7 6 5 33 33 H 1.09001 * 109.47289 * 60.00267 * 14 12 11 34 34 H 1.09004 * 109.47261 * 180.02562 * 14 12 11 35 35 H 1.09002 * 109.47153 * 300.00183 * 14 12 11 36 36 H 1.08997 * 109.47395 * 185.00396 * 15 12 11 37 37 H 1.09004 * 109.46579 * 304.99673 * 15 12 11 38 38 H 0.97000 * 120.00169 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.46884 * 90.00088 * 25 24 5 40 40 H 1.08994 * 109.47165 * 210.00111 * 25 24 5 41 41 H 1.09002 * 109.47076 * 330.00600 * 25 24 5 42 42 H 1.07995 * 119.97056 * 180.31829 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5782 1.2016 0.0005 5 6 4.2737 0.0000 0.0005 6 7 5.6762 0.0000 0.0016 7 6 6.5032 0.4581 0.9928 8 7 7.7289 0.2775 0.5888 9 7 7.7356 -0.2635 -0.5769 10 6 6.5036 -0.4598 -0.9860 11 16 6.0096 -1.1746 -2.5189 12 6 7.6325 -1.5064 -3.2484 13 1 8.2158 -0.5859 -3.2708 14 6 8.3650 -2.5540 -2.4078 15 6 7.4530 -2.0313 -4.6744 16 6 6.8425 -0.9538 -5.5331 17 1 6.6066 0.0091 -5.1048 18 6 6.5862 -1.1972 -6.8658 19 7 6.8740 -2.3697 -7.3875 20 14 5.8302 0.1386 -7.9305 21 1 5.6037 1.3560 -7.1109 22 1 6.7516 0.4603 -9.0497 23 1 4.5346 -0.3384 -8.4775 24 6 3.5784 -1.2012 -0.0057 25 6 4.3296 -2.5076 -0.0121 26 6 2.1969 -1.1981 0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6556 2.1329 0.0004 31 1 4.1166 2.1377 0.0010 32 1 6.1963 0.8924 1.9327 33 1 7.7818 -3.4745 -2.3853 34 1 9.3426 -2.7534 -2.8469 35 1 8.4929 -2.1800 -1.3919 36 1 8.4233 -2.3147 -5.0821 37 1 6.7963 -2.9012 -4.6613 38 1 6.6934 -2.5409 -8.3250 39 1 4.5104 -2.8277 1.0141 40 1 3.7395 -3.2636 -0.5299 41 1 5.2825 -2.3763 -0.5249 42 1 1.6553 -2.1324 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340666454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:04 Heat of formation + Delta-G solvation = 77.023562 kcal Electronic energy + Delta-G solvation = -23916.569718 eV Core-core repulsion = 20602.202517 eV Total energy + Delta-G solvation = -3314.367200 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.08476 -40.63509 -36.61385 -36.23072 -34.13793 -33.88087 -32.45568 -31.76620 -29.35903 -28.28846 -27.68818 -25.28597 -24.42674 -23.77287 -22.94744 -22.43786 -21.60690 -19.52334 -18.53012 -17.78776 -17.60456 -16.75343 -16.56994 -16.15432 -16.02249 -15.88334 -15.17023 -15.01585 -14.81979 -14.31349 -14.25144 -14.09311 -13.75384 -13.51137 -13.36727 -13.23999 -13.10334 -12.81033 -12.76317 -12.59537 -12.53699 -12.37758 -12.26205 -12.24842 -11.82527 -11.55722 -11.47039 -11.21555 -11.04122 -11.00842 -10.55750 -9.88588 -9.57745 -8.58782 -8.21209 -6.30282 -0.11193 0.15315 0.26545 0.64089 1.24851 1.38736 1.40205 1.52789 1.61789 1.69331 2.40572 2.50710 3.13784 3.59382 3.68924 3.71578 3.88809 4.05791 4.08200 4.19131 4.21674 4.26475 4.39040 4.51556 4.51863 4.57595 4.62681 4.67729 4.81171 4.88598 4.89132 4.95108 4.99816 5.11279 5.19999 5.23794 5.26275 5.37455 5.37896 5.48009 5.54230 5.72383 5.76007 6.03441 6.15707 6.81219 7.38007 7.50218 8.90505 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.004631 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.018330 B = 6044.608761 C = 7419.751143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.063 4.063 3 C -0.116 4.116 4 C -0.097 4.097 5 C 0.068 3.932 6 N -0.416 5.416 7 C 0.175 3.825 8 N -0.325 5.325 9 N -0.323 5.323 10 C 0.161 3.839 11 S 0.025 5.975 12 C -0.056 4.056 13 H 0.073 0.927 14 C -0.136 4.136 15 C 0.047 3.953 16 C -0.535 4.535 17 H 0.059 0.941 18 C 0.011 3.989 19 N -0.927 5.927 20 Si 0.954 3.046 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.275 1.275 24 C -0.064 4.064 25 C -0.132 4.132 26 C -0.116 4.116 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.159 0.841 31 H 0.136 0.864 32 H 0.263 0.737 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.020 0.980 37 H 0.009 0.991 38 H 0.265 0.735 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.713 4.361 19.342 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.063 4.063 3 C -0.134 4.134 4 C -0.117 4.117 5 C -0.022 4.022 6 N -0.107 5.107 7 C -0.115 4.115 8 N -0.162 5.162 9 N -0.166 5.166 10 C -0.213 4.213 11 S 0.255 5.745 12 C -0.185 4.185 13 H 0.092 0.908 14 C -0.195 4.195 15 C 0.008 3.992 16 C -0.573 4.573 17 H 0.077 0.923 18 C -0.188 4.188 19 N -0.567 5.567 20 Si 0.779 3.221 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.201 1.201 24 C -0.065 4.065 25 C -0.189 4.189 26 C -0.135 4.135 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.177 0.823 31 H 0.153 0.847 32 H 0.279 0.721 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.225 4.083 18.751 23.888 hybrid contribution 0.185 0.736 -0.421 0.867 sum -14.040 4.819 18.330 23.587 Atomic orbital electron populations 1.20918 0.88325 1.04484 1.03508 1.20459 0.98158 0.92389 0.95290 1.21242 0.92289 0.99490 1.00401 1.21260 0.95510 0.96022 0.98864 1.17701 0.78320 0.95500 1.10684 1.44037 1.06240 1.46634 1.13761 1.27533 0.85327 1.01691 0.96914 1.73841 1.19901 1.16450 1.06004 1.74633 1.16434 1.18639 1.06931 1.27489 0.89779 1.05189 0.98892 1.85984 1.12993 1.73278 1.02262 1.23394 0.93592 1.02286 0.99236 0.90812 1.22016 1.00365 0.97578 0.99537 1.18864 0.96747 0.95858 0.87683 1.21563 1.40997 0.99672 0.95053 0.92255 1.25781 0.96035 0.97616 0.99332 1.70068 1.49051 1.23577 1.13995 0.85554 0.78330 0.79541 0.78664 1.19070 1.20371 1.20084 1.20066 0.94962 0.93802 0.97706 1.21077 1.00674 0.94231 1.02947 1.21149 0.91617 0.99713 1.00979 0.90184 0.90031 0.89652 0.82338 0.84653 0.72113 0.91873 0.91353 0.91607 0.96224 0.97256 0.92644 0.90069 0.89254 0.92601 0.83001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.01 71.24 0.71 -0.31 16 2 C -0.06 -0.95 5.88 -19.85 -0.12 -1.06 16 3 C -0.12 -1.81 9.69 22.25 0.22 -1.60 16 4 C -0.10 -1.98 9.93 22.38 0.22 -1.76 16 5 C 0.07 1.70 5.59 38.07 0.21 1.92 16 6 N -0.42 -12.32 2.45 -349.63 -0.86 -13.17 16 7 C 0.17 4.65 12.72 179.69 2.29 6.94 16 8 N -0.32 -11.38 12.17 -59.18 -0.72 -12.10 16 9 N -0.32 -12.79 9.74 -56.69 -0.55 -13.34 16 10 C 0.16 5.91 6.26 179.46 1.12 7.03 16 11 S 0.02 0.99 18.96 -56.49 -1.07 -0.08 16 12 C -0.06 -2.45 2.29 30.60 0.07 -2.38 16 13 H 0.07 3.45 8.14 -2.39 -0.02 3.43 16 14 C -0.14 -5.19 9.01 71.98 0.65 -4.54 16 15 C 0.05 2.45 4.44 29.85 0.13 2.58 16 16 C -0.53 -29.97 8.53 25.60 0.22 -29.75 16 17 H 0.06 3.31 7.60 -2.91 -0.02 3.29 16 18 C 0.01 0.62 5.46 84.65 0.46 1.08 16 19 N -0.93 -55.06 13.29 21.45 0.28 -54.78 16 20 Si 0.95 44.22 29.54 68.60 2.03 46.24 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 C -0.06 -1.48 5.88 -19.75 -0.12 -1.59 16 25 C -0.13 -3.15 9.60 71.24 0.68 -2.47 16 26 C -0.12 -2.07 9.35 22.25 0.21 -1.87 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 29 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 30 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 31 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 32 H 0.26 3.99 8.06 -2.91 -0.02 3.97 16 33 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.07 2.51 5.91 -2.39 -0.01 2.49 16 36 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.09 1.87 8.09 -2.39 -0.02 1.85 16 41 H 0.06 1.67 4.25 -2.39 -0.01 1.66 16 42 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -70.56 361.68 7.09 -63.47 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.02 Total: 11.53 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 6.96 Total: -27.77 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -1.84 Total: -93.39 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -1.07 Total: -0.08 kcal Total: -70.56 7.09 -63.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340666454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.495 kcal (2) G-P(sol) polarization free energy of solvation -70.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds