Wall clock time and date at job start Tue Mar 31 2020 11:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99856 * 2 1 4 4 H 1.48509 * 109.46823 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47288 * 299.99493 * 3 2 1 6 6 H 1.48494 * 109.47580 * 59.99917 * 3 2 1 7 7 C 1.37871 * 119.99695 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99904 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47199 * 179.97438 * 9 7 2 11 11 O 1.42900 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.35904 * 116.99775 * 180.02562 * 11 10 9 13 13 C 1.38812 * 120.02182 * 359.97438 * 12 11 10 14 14 C 1.38166 * 120.08699 * 179.97438 * 13 12 11 15 15 C 1.38162 * 120.13265 * 0.02562 * 14 13 12 16 16 C 1.38914 * 120.03509 * 0.02562 * 15 14 13 17 17 N 1.39823 * 120.04750 * 179.97438 * 16 15 14 18 18 C 1.34775 * 120.00530 * 144.92182 * 17 16 15 19 19 O 1.21624 * 119.99790 * 4.63474 * 18 17 16 20 20 C 1.47063 * 119.99923 * 184.63423 * 18 17 16 21 21 C 1.32117 * 118.87549 * 179.73156 * 20 18 17 22 22 C 1.50266 * 122.57691 * 180.14574 * 21 20 18 23 23 O 1.42898 * 110.14268 * 344.80331 * 22 21 20 24 24 C 1.43271 * 113.10040 * 50.33211 * 23 22 21 25 25 C 1.50411 * 118.88025 * 0.02562 * 20 18 17 26 26 C 1.38585 * 120.01555 * 180.02562 * 12 11 10 27 27 H 0.97001 * 119.99741 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47204 * 60.00431 * 9 7 2 29 29 H 1.08989 * 109.47298 * 299.99788 * 9 7 2 30 30 H 1.09002 * 109.47085 * 60.00253 * 10 9 7 31 31 H 1.09005 * 109.47269 * 300.00283 * 10 9 7 32 32 H 1.08000 * 119.95288 * 359.97438 * 13 12 11 33 33 H 1.08006 * 119.93574 * 179.97438 * 14 13 12 34 34 H 1.07998 * 119.98132 * 179.97438 * 15 14 13 35 35 H 0.97003 * 119.99431 * 324.92242 * 17 16 15 36 36 H 1.08005 * 118.70927 * 0.39161 * 21 20 18 37 37 H 1.08996 * 109.50413 * 224.50023 * 22 21 20 38 38 H 1.09000 * 109.07671 * 104.83966 * 22 21 20 39 39 H 1.09004 * 109.64010 * 171.46514 * 24 23 22 40 40 H 1.09005 * 109.63896 * 50.84993 * 24 23 22 41 41 H 1.09001 * 109.45572 * 283.35118 * 25 20 18 42 42 H 1.08996 * 109.45616 * 43.28838 * 25 20 18 43 43 H 1.07998 * 120.06190 * 0.29123 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0017 10 6 2.2451 -3.6621 0.0015 11 8 1.5306 -4.8996 0.0020 12 6 2.2708 -6.0394 0.0024 13 6 3.6571 -5.9672 0.0017 14 6 4.4109 -7.1251 0.0027 15 6 3.7880 -8.3583 0.0037 16 6 2.4010 -8.4367 0.0033 17 7 1.7703 -9.6846 0.0038 18 6 0.6136 -9.8549 0.6742 19 8 0.0746 -8.9043 1.2082 20 6 0.0032 -11.1901 0.7601 21 6 -1.1281 -11.3327 1.4274 22 6 -1.8215 -12.6581 1.5705 23 8 -1.2963 -13.5927 0.6257 24 6 0.1345 -13.6637 0.6410 25 6 0.6916 -12.3479 0.0909 26 6 1.6420 -7.2744 0.0023 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5575 -0.8880 29 1 0.6247 -2.5563 0.8919 30 1 2.8724 -3.6040 0.8910 31 1 2.8712 -3.6047 -0.8890 32 1 4.1469 -5.0047 0.0005 33 1 5.4894 -7.0661 0.0017 34 1 4.3796 -9.2618 0.0040 35 1 2.1654 -10.4278 -0.4785 36 1 -1.5740 -10.4617 1.8847 37 1 -2.8899 -12.5304 1.3969 38 1 -1.6619 -13.0365 2.5802 39 1 0.4670 -14.4923 0.0157 40 1 0.4832 -13.8096 1.6635 41 1 0.5175 -12.3017 -0.9841 42 1 1.7625 -12.2965 0.2874 43 1 0.5636 -7.3324 -0.0028 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341353164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:58 Heat of formation + Delta-G solvation = -81.258765 kcal Electronic energy + Delta-G solvation = -25045.955006 eV Core-core repulsion = 21249.678547 eV Total energy + Delta-G solvation = -3796.276459 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.97827 -39.77398 -38.98716 -37.18734 -34.77255 -34.13520 -33.33473 -31.61846 -30.86242 -29.65753 -29.03516 -26.58903 -25.05404 -24.40790 -23.23907 -22.17960 -21.57350 -20.33823 -19.01825 -18.35741 -17.82496 -16.81936 -16.32999 -16.11920 -15.91478 -15.74761 -15.51691 -15.34404 -15.21606 -14.81631 -14.44198 -14.14196 -14.08676 -13.48567 -13.21060 -13.01263 -12.94609 -12.71584 -12.31546 -12.08452 -11.81033 -11.67718 -11.47575 -11.29202 -10.93654 -10.83663 -10.58777 -10.45868 -10.27599 -9.85189 -9.81155 -9.63085 -9.58562 -9.26060 -8.43948 -8.27325 -7.82282 -6.08165 -4.12794 0.82229 1.48215 1.63993 2.75589 2.91154 3.27863 3.34171 3.34995 3.38455 3.83071 3.96954 4.13222 4.20620 4.32122 4.43307 4.65079 4.73353 4.84996 4.99204 4.99819 5.08844 5.15872 5.17744 5.28146 5.34298 5.36400 5.45425 5.67009 5.80580 5.87725 5.95315 6.05509 6.06510 6.29193 6.37214 6.52290 6.53866 6.61011 6.76179 6.97459 7.18891 7.53919 7.67407 7.83650 7.89095 8.09358 8.26193 8.93079 9.51336 11.03485 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024297 B = 0.002158 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.142632 B =12973.255509 C =13997.774046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.065 3.935 11 O -0.312 6.312 12 C 0.163 3.837 13 C -0.224 4.224 14 C -0.062 4.062 15 C -0.195 4.195 16 C 0.173 3.827 17 N -0.666 5.666 18 C 0.548 3.452 19 O -0.511 6.511 20 C -0.170 4.170 21 C -0.106 4.106 22 C 0.084 3.916 23 O -0.376 6.376 24 C 0.060 3.940 25 C -0.122 4.122 26 C -0.162 4.162 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.410 0.590 36 H 0.140 0.860 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -30.041 0.781 30.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.009 4.009 11 O -0.225 6.225 12 C 0.115 3.885 13 C -0.244 4.244 14 C -0.081 4.081 15 C -0.216 4.216 16 C 0.080 3.920 17 N -0.311 5.311 18 C 0.337 3.663 19 O -0.386 6.386 20 C -0.173 4.173 21 C -0.125 4.125 22 C 0.008 3.992 23 O -0.295 6.295 24 C -0.017 4.017 25 C -0.159 4.159 26 C -0.183 4.183 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.246 0.754 36 H 0.157 0.843 37 H 0.134 0.866 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.143 -29.348 1.058 29.535 hybrid contribution 1.115 0.952 -0.060 1.467 sum 4.257 -28.397 0.998 28.731 Atomic orbital electron populations 1.69993 1.06100 1.26834 1.49787 1.25003 0.94916 0.99408 0.94971 0.86426 0.79959 0.83263 0.77696 1.19644 1.20859 1.20846 1.21006 0.93069 0.90182 1.52074 0.92294 1.19137 0.94209 0.89006 0.98949 1.23355 0.97102 0.80766 0.99699 1.86198 1.36495 1.13129 1.86646 1.18987 0.89870 0.87349 0.92288 1.21403 0.93105 0.99980 1.09866 1.20656 0.99395 0.91226 0.96811 1.20622 0.92030 0.98285 1.10625 1.17289 0.91039 0.84086 0.99625 1.43299 1.24385 1.11633 1.51834 1.18541 0.80425 0.89121 0.78189 1.90875 1.61008 1.41430 1.45304 1.20747 0.98399 0.93746 1.04451 1.23820 0.94019 1.00439 0.94265 1.21645 0.98807 0.85404 0.93389 1.88157 1.20486 1.60763 1.60067 1.22656 0.81055 0.96783 1.01192 1.21105 1.00193 0.93226 1.01358 1.20420 1.01473 0.88562 1.07848 0.92767 0.95371 0.95333 0.93043 0.93040 0.85002 0.85653 0.86124 0.75376 0.84262 0.86594 0.90619 0.87877 0.92338 0.89149 0.89540 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.06 1.44 4.68 37.16 0.17 1.61 16 11 O -0.31 -6.88 10.13 -19.44 -0.20 -7.08 16 12 C 0.16 3.07 6.68 -39.24 -0.26 2.80 16 13 C -0.22 -3.59 9.04 -39.40 -0.36 -3.95 16 14 C -0.06 -0.80 10.03 -39.64 -0.40 -1.20 16 15 C -0.20 -2.34 9.96 -39.36 -0.39 -2.73 16 16 C 0.17 2.41 6.30 -83.75 -0.53 1.88 16 17 N -0.67 -7.17 5.26 -10.96 -0.06 -7.23 16 18 C 0.55 6.80 7.57 -12.68 -0.10 6.71 16 19 O -0.51 -8.60 13.49 5.26 0.07 -8.53 16 20 C -0.17 -1.53 5.86 -103.11 -0.60 -2.13 16 21 C -0.11 -0.90 9.58 -36.44 -0.35 -1.24 16 22 C 0.08 0.52 7.04 35.80 0.25 0.77 16 23 O -0.38 -2.85 10.83 -35.23 -0.38 -3.24 16 24 C 0.06 0.31 6.88 37.21 0.26 0.57 16 25 C -0.12 -0.68 5.25 -27.97 -0.15 -0.82 16 26 C -0.16 -2.85 8.62 -39.24 -0.34 -3.19 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.82 8.14 -51.94 -0.42 0.40 16 30 H 0.05 1.09 7.66 -51.93 -0.40 0.69 16 31 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 32 H 0.13 2.05 6.29 -52.49 -0.33 1.72 16 33 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.41 2.79 7.19 -40.82 -0.29 2.50 16 36 H 0.14 1.32 7.29 -52.48 -0.38 0.94 16 37 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.26 8.09 -51.93 -0.42 -0.16 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.32 7.39 -51.93 -0.38 -0.07 16 43 H 0.14 2.76 6.23 -52.49 -0.33 2.43 16 LS Contribution 360.08 15.07 5.43 5.43 Total: -1.00 -34.96 360.08 -8.63 -43.59 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.86 Total: 0.73 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -3.35 Total: -14.01 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.68 Total: -33.41 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.51 Total: -18.84 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.96 -8.63 -43.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341353164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.667 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds