Wall clock time and date at job start Tue Mar 31 2020 11:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38746 * 120.05467 * 359.72752 * 12 11 10 14 14 C 1.38131 * 119.94707 * 179.69741 * 13 12 11 15 15 C 1.38290 * 120.04957 * 0.59675 * 14 13 12 16 16 C 1.38250 * 120.11062 * 359.67603 * 15 14 13 17 17 C 1.50704 * 119.96871 * 180.02562 * 16 15 14 18 18 N 1.46898 * 109.47159 * 270.02290 * 17 16 15 19 19 C 1.46900 * 111.00021 * 180.02562 * 18 17 16 20 20 C 1.52992 * 109.46964 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.46947 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.46958 * 59.99918 * 21 20 19 23 23 F 1.39905 * 109.47098 * 179.97438 * 21 20 19 24 24 F 1.39900 * 109.47609 * 300.00215 * 21 20 19 25 25 C 1.38162 * 120.05723 * 0.02573 * 16 15 14 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.08010 * 120.02919 * 359.97292 * 13 12 11 32 32 H 1.07993 * 119.97567 * 180.29505 * 14 13 12 33 33 H 1.07997 * 119.94208 * 179.70200 * 15 14 13 34 34 H 1.09003 * 109.46632 * 30.02434 * 17 16 15 35 35 H 1.08996 * 109.46429 * 150.02007 * 17 16 15 36 36 H 1.00903 * 110.99590 * 56.04543 * 18 17 16 37 37 H 1.09008 * 109.46830 * 300.00052 * 19 18 17 38 38 H 1.08997 * 109.46985 * 59.99504 * 19 18 17 39 39 H 1.09001 * 109.47636 * 299.99453 * 20 19 18 40 40 H 1.08998 * 109.47825 * 60.00442 * 20 19 18 41 41 H 1.07998 * 120.02891 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6563 -5.9682 -0.0064 14 6 4.4064 -7.1281 -0.0007 15 6 3.7773 -8.3596 -0.0018 16 6 2.3968 -8.4332 -0.0018 17 6 1.7146 -9.7770 -0.0023 18 7 1.4933 -10.2133 -1.3875 19 6 0.8280 -11.5224 -1.4272 20 6 0.6157 -11.9425 -2.8829 21 6 -0.0767 -13.3063 -2.9243 22 9 -1.3147 -13.2205 -2.2783 23 9 -0.2713 -13.6903 -4.2554 24 9 0.7223 -14.2549 -2.2769 25 6 1.6421 -7.2759 -0.0012 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 4.1481 -5.0066 -0.0109 32 1 5.4850 -7.0732 -0.0004 33 1 4.3655 -9.2654 -0.0022 34 1 2.3435 -10.5040 0.5116 35 1 0.7564 -9.6981 0.5113 36 1 2.3602 -10.2320 -1.9034 37 1 1.4505 -12.2617 -0.9230 38 1 -0.1363 -11.4552 -0.9236 39 1 -0.0065 -11.2034 -3.3875 40 1 1.5803 -12.0099 -3.3861 41 1 0.5637 -7.3340 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344706491.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:50 Heat of formation + Delta-G solvation = -187.553210 kcal Electronic energy + Delta-G solvation = -24820.524137 eV Core-core repulsion = 20477.781665 eV Total energy + Delta-G solvation = -4342.742472 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.50373 -48.00684 -47.97636 -39.86974 -37.87360 -36.52577 -33.42842 -33.02967 -30.95084 -30.37496 -29.15764 -26.40131 -25.05491 -24.10822 -22.49445 -22.34187 -21.65364 -20.20975 -18.97281 -18.80291 -17.93611 -17.50583 -16.52158 -16.22859 -15.69001 -15.53691 -15.36656 -15.17830 -14.88359 -14.83902 -14.55896 -14.44467 -14.36213 -14.12207 -14.11873 -13.83091 -13.43471 -12.96551 -12.70589 -12.63689 -12.33940 -12.19334 -12.15202 -11.84616 -11.45685 -11.40173 -11.25074 -10.91070 -10.71214 -10.47082 -9.88552 -9.67427 -9.29971 -8.96731 -8.72566 -8.46577 -7.88489 -6.11716 -4.16364 1.37477 1.62809 2.32317 3.25500 3.25801 3.32581 3.36058 3.53586 3.62886 3.78644 3.83929 4.20028 4.37997 4.40581 4.47721 4.72697 4.84843 4.90154 5.06361 5.19771 5.22458 5.24771 5.28942 5.35069 5.41933 5.65310 5.79961 6.01556 6.03551 6.14049 6.43594 6.50893 6.54178 6.60261 6.70639 6.91556 6.94031 7.49449 7.62711 7.79841 8.04411 8.22404 8.89455 9.48041 10.99865 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.022834 B = 0.001825 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.932968 B =15338.998464 C =16130.838736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.315 6.315 12 C 0.145 3.855 13 C -0.209 4.209 14 C -0.080 4.080 15 C -0.166 4.166 16 C -0.054 4.054 17 C 0.104 3.896 18 N -0.680 5.680 19 C 0.055 3.945 20 C -0.167 4.167 21 C 0.455 3.545 22 F -0.182 7.182 23 F -0.184 7.184 24 F -0.186 7.186 25 C -0.138 4.138 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.346 0.654 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 -27.448 -3.609 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.228 6.228 12 C 0.098 3.902 13 C -0.228 4.228 14 C -0.099 4.099 15 C -0.185 4.185 16 C -0.055 4.055 17 C -0.024 4.024 18 N -0.311 5.311 19 C -0.074 4.074 20 C -0.205 4.205 21 C 0.400 3.600 22 F -0.164 7.164 23 F -0.166 7.166 24 F -0.167 7.167 25 C -0.157 4.157 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.164 0.836 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.140 0.860 40 H 0.127 0.873 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.551 -26.970 -3.670 27.449 hybrid contribution 1.320 0.267 0.187 1.360 sum 4.871 -26.703 -3.483 27.366 Atomic orbital electron populations 1.69989 1.06095 1.26873 1.49745 1.25000 0.94918 0.99415 0.94927 0.86427 0.79963 0.83246 0.77726 1.19652 1.20826 1.20841 1.21005 0.93073 0.90201 1.52151 0.92319 1.19131 0.94188 0.89022 0.98909 1.23334 0.97084 0.80828 0.99634 1.86182 1.36535 1.13199 1.86885 1.19206 0.90093 0.87600 0.93312 1.21416 0.93267 0.99872 1.08270 1.20848 0.99386 0.91886 0.97743 1.20769 0.93703 0.97442 1.06593 1.19326 0.93065 0.93639 0.99467 1.20843 1.00157 0.92591 0.88855 1.60402 1.30055 1.26531 1.14127 1.21893 1.01142 0.90761 0.93620 1.22847 1.04061 0.92061 1.01540 1.20533 0.77493 0.88556 0.73417 1.93202 1.44917 1.96513 1.81737 1.93203 1.95322 1.92700 1.35330 1.93187 1.73580 1.68204 1.81755 1.20268 1.00344 0.89125 1.05969 0.92745 0.95364 0.95375 0.93137 0.93124 0.85225 0.86190 0.86768 0.93931 0.89687 0.83579 0.93797 0.89384 0.86048 0.87287 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.64 5.34 -27.89 -0.15 0.49 16 10 C 0.07 1.39 4.68 37.16 0.17 1.56 16 11 O -0.31 -6.43 10.14 -19.43 -0.20 -6.63 16 12 C 0.14 2.47 6.69 -39.22 -0.26 2.21 16 13 C -0.21 -3.16 9.04 -39.43 -0.36 -3.52 16 14 C -0.08 -0.99 10.04 -39.60 -0.40 -1.39 16 15 C -0.17 -1.84 9.70 -39.56 -0.38 -2.22 16 16 C -0.05 -0.63 5.39 -104.64 -0.56 -1.20 16 17 C 0.10 0.90 5.81 -4.98 -0.03 0.88 16 18 N -0.68 -5.32 6.49 -115.06 -0.75 -6.07 16 19 C 0.06 0.34 5.44 -3.83 -0.02 0.32 16 20 C -0.17 -0.87 5.52 -26.73 -0.15 -1.02 16 21 C 0.45 3.13 3.16 37.16 0.12 3.25 16 22 F -0.18 -1.49 16.80 2.25 0.04 -1.45 16 23 F -0.18 -1.46 17.32 2.25 0.04 -1.42 16 24 F -0.19 -1.42 16.80 2.25 0.04 -1.38 16 25 C -0.14 -2.01 9.64 -39.43 -0.38 -2.39 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.02 7.68 -51.93 -0.40 0.62 16 30 H 0.05 1.02 7.65 -51.93 -0.40 0.63 16 31 H 0.13 1.94 6.30 -52.48 -0.33 1.61 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.11 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.04 0.31 8.09 -51.93 -0.42 -0.11 16 35 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.35 2.39 8.72 -39.29 -0.34 2.05 16 37 H 0.04 0.25 7.80 -51.92 -0.41 -0.16 16 38 H 0.09 0.58 7.80 -51.93 -0.41 0.18 16 39 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -30.54 361.61 -8.09 -38.64 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.62 Total: -1.30 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.81 Total: -16.36 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: -0.01 Total: -31.70 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.20 Total: -6.63 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.11 Total: -4.25 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.54 -8.09 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344706491.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.917 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds