Wall clock time and date at job start Tue Mar 31 2020 11:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38746 * 120.05467 * 359.72752 * 12 11 10 14 14 C 1.38131 * 119.94707 * 179.69741 * 13 12 11 15 15 C 1.38290 * 120.04957 * 0.59675 * 14 13 12 16 16 C 1.38250 * 120.11062 * 359.67603 * 15 14 13 17 17 C 1.50704 * 119.96871 * 180.02562 * 16 15 14 18 18 N 1.46898 * 109.47159 * 270.02290 * 17 16 15 19 19 C 1.46900 * 111.00021 * 180.02562 * 18 17 16 20 20 C 1.52992 * 109.46964 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.46947 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.46958 * 59.99918 * 21 20 19 23 23 F 1.39905 * 109.47098 * 179.97438 * 21 20 19 24 24 F 1.39900 * 109.47609 * 300.00215 * 21 20 19 25 25 C 1.38162 * 120.05723 * 0.02573 * 16 15 14 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.08010 * 120.02919 * 359.97292 * 13 12 11 32 32 H 1.07993 * 119.97567 * 180.29505 * 14 13 12 33 33 H 1.07997 * 119.94208 * 179.70200 * 15 14 13 34 34 H 1.09003 * 109.46632 * 30.02434 * 17 16 15 35 35 H 1.08996 * 109.46429 * 150.02007 * 17 16 15 36 36 H 1.00903 * 110.99590 * 56.04543 * 18 17 16 37 37 H 1.09008 * 109.46830 * 300.00052 * 19 18 17 38 38 H 1.08997 * 109.46985 * 59.99504 * 19 18 17 39 39 H 1.09001 * 109.47636 * 299.99453 * 20 19 18 40 40 H 1.08998 * 109.47825 * 60.00442 * 20 19 18 41 41 H 1.07998 * 120.02891 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6563 -5.9682 -0.0064 14 6 4.4064 -7.1281 -0.0007 15 6 3.7773 -8.3596 -0.0018 16 6 2.3968 -8.4332 -0.0018 17 6 1.7146 -9.7770 -0.0023 18 7 1.4933 -10.2133 -1.3875 19 6 0.8280 -11.5224 -1.4272 20 6 0.6157 -11.9425 -2.8829 21 6 -0.0767 -13.3063 -2.9243 22 9 -1.3147 -13.2205 -2.2783 23 9 -0.2713 -13.6903 -4.2554 24 9 0.7223 -14.2549 -2.2769 25 6 1.6421 -7.2759 -0.0012 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 4.1481 -5.0066 -0.0109 32 1 5.4850 -7.0732 -0.0004 33 1 4.3655 -9.2654 -0.0022 34 1 2.3435 -10.5040 0.5116 35 1 0.7564 -9.6981 0.5113 36 1 2.3602 -10.2320 -1.9034 37 1 1.4505 -12.2617 -0.9230 38 1 -0.1363 -11.4552 -0.9236 39 1 -0.0065 -11.2034 -3.3875 40 1 1.5803 -12.0099 -3.3861 41 1 0.5637 -7.3340 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344706491.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:50 Heat of formation + Delta-G solvation = -205.545697 kcal Electronic energy + Delta-G solvation = -24821.304350 eV Core-core repulsion = 20477.781665 eV Total energy + Delta-G solvation = -4343.522685 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.07975 -48.58968 -48.56594 -41.06514 -38.97012 -37.32676 -35.47312 -33.75400 -32.57772 -31.38700 -30.47119 -27.31507 -26.74995 -24.89677 -23.52681 -23.24806 -22.92252 -21.53137 -19.53746 -19.38841 -19.13279 -18.36538 -18.05393 -17.20250 -16.93157 -16.87760 -16.65932 -16.38819 -15.82117 -15.53753 -15.44895 -15.10076 -14.98460 -14.80153 -14.72257 -14.70827 -14.41243 -14.34005 -14.24477 -13.92038 -13.56842 -13.07907 -12.99897 -12.79563 -12.71882 -12.58992 -12.52409 -12.37125 -12.26716 -11.80472 -11.59031 -11.54663 -11.35882 -10.63337 -9.83368 -9.44912 -9.07389 -8.27174 -6.40911 0.35209 0.55444 1.40894 1.41930 1.55408 1.79442 2.27732 2.51814 2.66164 2.90276 3.03537 3.07223 3.11697 3.56645 3.82078 3.93163 3.94707 4.05405 4.17985 4.24909 4.26773 4.33521 4.43606 4.45149 4.56809 4.67811 4.73596 4.78844 4.84417 4.88942 5.12745 5.31732 5.46289 5.46329 5.54440 5.61766 5.68648 5.84012 5.96636 6.07708 6.39334 6.59200 6.74221 7.29276 8.86186 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.022834 B = 0.001825 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.932968 B =15338.998464 C =16130.838736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.027 3.973 10 C 0.086 3.914 11 O -0.343 6.343 12 C 0.104 3.896 13 C -0.223 4.223 14 C -0.078 4.078 15 C -0.150 4.150 16 C -0.046 4.046 17 C 0.107 3.893 18 N -0.690 5.690 19 C 0.058 3.942 20 C -0.158 4.158 21 C 0.455 3.545 22 F -0.192 7.192 23 F -0.191 7.191 24 F -0.189 7.189 25 C -0.152 4.152 26 H 0.267 0.733 27 H -0.002 1.002 28 H -0.002 1.002 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.125 0.875 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.353 0.647 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.121 0.879 40 H 0.128 0.872 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.194 -28.913 -3.735 30.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.199 4.199 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.010 4.010 10 C 0.011 3.989 11 O -0.258 6.258 12 C 0.058 3.942 13 C -0.242 4.242 14 C -0.096 4.096 15 C -0.169 4.169 16 C -0.047 4.047 17 C -0.021 4.021 18 N -0.323 5.323 19 C -0.071 4.071 20 C -0.196 4.196 21 C 0.400 3.600 22 F -0.174 7.174 23 F -0.172 7.172 24 F -0.171 7.171 25 C -0.171 4.171 26 H 0.076 0.924 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.172 0.828 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.228 -28.469 -3.799 29.389 hybrid contribution 0.477 0.517 0.221 0.737 sum 6.705 -27.952 -3.578 28.967 Atomic orbital electron populations 1.70133 1.08059 1.28169 1.50669 1.26068 0.95855 1.03762 0.94186 0.85215 0.79045 0.77795 0.77868 1.18074 1.20231 1.20248 1.21426 0.93833 0.90989 1.52018 0.91083 1.18973 0.94581 0.91472 0.95965 1.22834 0.95335 0.80284 1.00398 1.86084 1.37560 1.13824 1.88339 1.19551 0.91153 0.86875 0.96587 1.21514 0.92543 1.01044 1.09074 1.21229 1.00828 0.91218 0.96349 1.21232 0.93538 0.98453 1.03651 1.19651 0.93584 0.93851 0.97601 1.20820 1.00228 0.91365 0.89702 1.60316 1.30690 1.27609 1.13645 1.21862 1.00832 0.90217 0.94179 1.22812 1.04820 0.90793 1.01221 1.20762 0.77181 0.89118 0.72911 1.93185 1.45694 1.96566 1.81910 1.93189 1.95362 1.92840 1.35855 1.93178 1.73581 1.68542 1.81804 1.20423 1.00431 0.89463 1.06764 0.92440 0.98391 0.98362 0.92255 0.92279 0.85750 0.83156 0.82874 0.91537 0.90078 0.82753 0.92708 0.90131 0.86035 0.85377 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.98 43.54 29.54 68.60 2.03 45.57 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 8 H 0.07 3.76 7.74 -2.91 -0.02 3.73 16 9 C 0.03 1.51 5.34 29.85 0.16 1.67 16 10 C 0.09 3.80 4.68 71.98 0.34 4.14 16 11 O -0.34 -14.82 10.14 -92.43 -0.94 -15.76 16 12 C 0.10 3.61 6.69 22.50 0.15 3.76 16 13 C -0.22 -6.60 9.04 22.37 0.20 -6.40 16 14 C -0.08 -1.70 10.04 22.26 0.22 -1.47 16 15 C -0.15 -2.74 9.70 22.29 0.22 -2.53 16 16 C -0.05 -0.98 5.39 -19.88 -0.11 -1.08 16 17 C 0.11 1.58 5.81 85.56 0.50 2.07 16 18 N -0.69 -9.03 6.49 -517.94 -3.36 -12.39 16 19 C 0.06 0.59 5.44 86.30 0.47 1.06 16 20 C -0.16 -1.34 5.52 30.59 0.17 -1.17 16 21 C 0.45 5.64 3.16 71.98 0.23 5.87 16 22 F -0.19 -2.98 16.80 44.97 0.76 -2.23 16 23 F -0.19 -2.82 17.32 44.97 0.78 -2.04 16 24 F -0.19 -2.58 16.80 44.97 0.76 -1.83 16 25 C -0.15 -4.45 9.64 22.36 0.22 -4.23 16 26 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 27 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.06 2.47 7.68 -2.39 -0.02 2.45 16 30 H 0.06 2.46 7.65 -2.39 -0.02 2.44 16 31 H 0.12 3.71 6.30 -2.91 -0.02 3.69 16 32 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 33 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 35 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 36 H 0.35 3.71 8.72 -89.69 -0.78 2.92 16 37 H 0.05 0.45 7.80 -2.38 -0.02 0.44 16 38 H 0.08 0.95 7.80 -2.39 -0.02 0.93 16 39 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.12 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -68.70 361.61 4.02 -64.67 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.27 Total: 9.17 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 3.46 Total: -28.53 kcal Atomic # 7 Polarization: -65.95 SS G_CDS: -3.08 Total: -69.02 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.94 Total: -15.76 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 2.29 Total: -6.09 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -68.70 4.02 -64.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344706491.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.871 kcal (2) G-P(sol) polarization free energy of solvation -68.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds