Wall clock time and date at job start Tue Mar 31 2020 11:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38236 * 119.99689 * 2 1 4 4 C 1.38235 * 120.00001 * 180.02562 * 3 2 1 5 5 C 1.38236 * 120.00005 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99944 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47099 * 90.00416 * 6 5 4 8 8 C 1.53001 * 109.47202 * 179.97438 * 7 6 5 9 9 S 1.80999 * 109.47035 * 179.97438 * 8 7 6 10 10 C 1.76201 * 100.00085 * 180.02562 * 9 8 7 11 11 N 1.32391 * 126.25556 * 0.02562 * 10 9 8 12 12 N 1.28520 * 110.20275 * 180.02562 * 11 10 9 13 13 C 1.33102 * 109.74198 * 0.02562 * 12 11 10 14 14 C 1.39781 * 126.56059 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99890 * 174.27781 * 14 13 12 16 16 C 1.40077 * 119.99784 * 354.28435 * 14 13 12 17 17 N 1.30810 * 120.00426 * 6.02093 * 16 14 13 18 18 Si 1.86803 * 119.99666 * 186.02180 * 16 14 13 19 19 H 1.48502 * 109.47314 * 94.97975 * 18 16 14 20 20 H 1.48498 * 109.47398 * 214.97866 * 18 16 14 21 21 H 1.48504 * 109.47322 * 334.98114 * 18 16 14 22 22 N 1.36665 * 126.26074 * 179.72030 * 10 9 8 23 23 C 1.46500 * 127.15220 * 359.97175 * 22 10 9 24 24 C 1.38233 * 119.99700 * 0.25730 * 5 4 3 25 25 C 1.38235 * 120.00223 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.46971 * 90.00167 * 1 2 3 27 27 H 1.08999 * 109.46685 * 210.00185 * 1 2 3 28 28 H 1.09002 * 109.47344 * 330.00276 * 1 2 3 29 29 H 1.08000 * 120.00321 * 359.97264 * 3 2 1 30 30 H 1.07998 * 120.00303 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47746 * 330.00432 * 6 5 4 32 32 H 1.09006 * 109.47330 * 210.00058 * 6 5 4 33 33 H 1.08999 * 109.47449 * 59.99841 * 7 6 5 34 34 H 1.08994 * 109.47057 * 299.99815 * 7 6 5 35 35 H 1.09003 * 109.46748 * 60.00548 * 8 7 6 36 36 H 1.08994 * 109.47289 * 300.00071 * 8 7 6 37 37 H 0.97006 * 120.00409 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.47208 * 90.03122 * 23 22 10 39 39 H 1.08999 * 109.47328 * 210.03308 * 23 22 10 40 40 H 1.08998 * 109.47260 * 330.03270 * 23 22 10 41 41 H 1.08004 * 120.00006 * 179.72566 * 24 5 4 42 42 H 1.07998 * 119.99786 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 5.7787 0.0002 -0.0017 7 6 6.2898 0.0008 1.4404 8 6 7.8198 0.0003 1.4393 9 16 8.4244 0.0017 3.1453 10 6 10.1622 0.0016 2.8541 11 7 10.7579 0.0011 1.6718 12 7 12.0348 0.0006 1.8182 13 6 12.3387 0.0002 3.1140 14 6 13.6220 -0.0009 3.6682 15 1 13.7488 0.0921 4.7367 16 6 14.7434 -0.1225 2.8377 17 7 14.5984 -0.1164 1.5377 18 14 16.4462 -0.2933 3.5867 19 1 16.8025 -1.7317 3.6834 20 1 17.4367 0.4054 2.7289 21 1 16.4531 0.3106 4.9434 22 7 11.1415 0.0078 3.8073 23 6 10.9611 0.0164 5.2611 24 6 3.5806 -1.1970 -0.0054 25 6 2.1982 -1.1971 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6581 2.1325 -0.0004 30 1 4.1205 2.1326 -0.0010 31 1 6.1417 0.8900 -0.5161 32 1 6.1417 -0.8900 -0.5154 33 1 5.9269 -0.8889 1.9549 34 1 5.9268 0.8909 1.9541 35 1 8.1830 0.8900 0.9248 36 1 8.1824 -0.8900 0.9256 37 1 15.3750 -0.2010 0.9625 38 1 10.9174 -1.0091 5.6279 39 1 11.7989 0.5340 5.7282 40 1 10.0326 0.5307 5.5090 41 1 4.1206 -2.1323 -0.0099 42 1 1.6583 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357069587.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:14 Heat of formation + Delta-G solvation = 67.089018 kcal Electronic energy + Delta-G solvation = -22148.961130 eV Core-core repulsion = 18834.163136 eV Total energy + Delta-G solvation = -3314.797994 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.48854 -39.64857 -35.54478 -33.68921 -33.31591 -32.42859 -31.07679 -29.34157 -28.51340 -26.50685 -25.63794 -24.92331 -22.87632 -22.01059 -20.83514 -20.66268 -20.24125 -17.34623 -16.50307 -15.94835 -15.92080 -15.43108 -15.20932 -14.90583 -14.55641 -14.54364 -14.11467 -13.80272 -13.57375 -13.42041 -13.22064 -12.73517 -12.50986 -12.34159 -12.21828 -12.08009 -11.92675 -11.62059 -11.33154 -11.31272 -11.17754 -10.92061 -10.89971 -10.71114 -10.36697 -10.14915 -9.71774 -9.58902 -9.07689 -8.68785 -8.61906 -8.41112 -8.37044 -6.81721 -6.64971 -4.56566 1.15788 1.25094 2.10980 2.87721 2.91784 3.06401 3.10210 3.37276 3.58442 3.87633 4.24767 4.43259 4.56067 4.61236 4.74130 4.86247 4.91757 5.13064 5.23699 5.28921 5.29999 5.32297 5.36278 5.45666 5.54994 5.56324 5.60390 5.71322 5.89572 5.90549 5.91389 6.03370 6.05089 6.09422 6.26712 6.32603 6.41650 6.53667 6.78669 6.86626 6.90342 7.24794 7.49897 7.90188 8.18584 8.70795 8.86820 10.27893 10.64904 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.039847 B = 0.002014 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.520800 B =13899.304841 C =14271.784119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.120 4.120 4 C -0.113 4.113 5 C -0.081 4.081 6 C -0.077 4.077 7 C -0.096 4.096 8 C -0.089 4.089 9 S -0.065 6.065 10 C 0.049 3.951 11 N -0.286 5.286 12 N -0.334 5.334 13 C 0.346 3.654 14 C -0.448 4.448 15 H 0.084 0.916 16 C 0.079 3.921 17 N -0.737 5.737 18 Si 0.921 3.079 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.262 1.262 22 N -0.516 5.516 23 C 0.102 3.898 24 C -0.113 4.113 25 C -0.120 4.120 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.279 0.721 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.122 0.878 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.990 0.049 0.056 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.138 4.138 4 C -0.131 4.131 5 C -0.081 4.081 6 C -0.116 4.116 7 C -0.135 4.135 8 C -0.238 4.238 9 S 0.163 5.837 10 C -0.323 4.323 11 N -0.132 5.132 12 N -0.181 5.181 13 C 0.101 3.899 14 C -0.489 4.489 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.361 5.361 18 Si 0.744 3.256 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.186 1.186 22 N -0.218 5.218 23 C -0.043 4.043 24 C -0.131 4.131 25 C -0.138 4.138 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.140 0.860 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.332 0.053 -0.662 21.343 hybrid contribution 1.508 -0.095 0.711 1.670 sum -19.824 -0.042 0.049 19.824 Atomic orbital electron populations 1.20776 0.91430 1.02638 1.02148 1.19906 0.95950 0.93324 1.00482 1.21012 0.94212 0.97421 1.01138 1.21084 0.94083 0.97794 1.00113 1.19922 0.95743 0.93138 0.99274 1.20611 0.90350 1.03689 0.96951 1.21316 0.92571 1.03217 0.96421 1.23307 0.97328 1.06877 0.96328 1.84364 0.92468 1.95700 1.11162 1.25326 0.94301 1.22883 0.89774 1.74532 1.03636 1.15935 1.19132 1.75458 1.01019 1.29480 1.12182 1.21630 0.85971 0.95040 0.87262 1.18103 0.86821 1.49088 0.94854 0.89782 1.25794 1.00994 0.93365 0.94540 1.70017 1.32021 1.30321 1.03717 0.86112 0.80502 0.79159 0.79789 1.19438 1.19983 1.18627 1.46053 1.05770 1.64277 1.05696 1.21484 1.02145 1.01633 0.79032 1.21085 0.94085 0.97793 1.00111 1.21012 0.94211 0.97423 1.01135 0.91361 0.91673 0.91675 0.86276 0.85956 0.90491 0.90491 0.91086 0.91088 0.89194 0.89178 0.91003 0.92542 0.90419 0.91553 0.85956 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 2 C -0.10 -0.86 5.88 -104.62 -0.62 -1.48 16 3 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 4 C -0.11 -1.12 9.70 -39.58 -0.38 -1.50 16 5 C -0.08 -0.84 5.13 -104.63 -0.54 -1.37 16 6 C -0.08 -0.81 5.35 -27.88 -0.15 -0.96 16 7 C -0.10 -1.14 5.20 -26.73 -0.14 -1.28 16 8 C -0.09 -1.40 5.22 37.16 0.19 -1.20 16 9 S -0.06 -1.18 21.78 -107.50 -2.34 -3.52 16 10 C 0.05 1.20 8.09 -87.28 -0.71 0.49 16 11 N -0.29 -7.97 11.62 30.89 0.36 -7.61 16 12 N -0.33 -10.18 10.50 31.26 0.33 -9.85 16 13 C 0.35 9.80 7.53 -154.81 -1.17 8.64 16 14 C -0.45 -12.01 9.05 -38.32 -0.35 -12.36 16 15 H 0.08 2.04 7.27 -52.48 -0.38 1.66 16 16 C 0.08 2.02 5.49 -17.30 -0.09 1.93 16 17 N -0.74 -20.41 11.96 55.56 0.66 -19.75 16 18 Si 0.92 18.64 29.57 -169.99 -5.03 13.62 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 22 N -0.52 -12.70 3.26 -123.18 -0.40 -13.10 16 23 C 0.10 1.90 10.88 59.85 0.65 2.55 16 24 C -0.11 -1.12 9.70 -39.58 -0.38 -1.50 16 25 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 28 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 29 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 32 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.50 8.14 -51.91 -0.42 1.08 16 36 H 0.09 1.51 8.14 -51.92 -0.42 1.08 16 37 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 1.36 7.49 -51.93 -0.39 0.97 16 40 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 41 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -33.42 370.98 -11.13 -44.55 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.22 Total: 1.44 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -4.08 Total: -11.35 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.95 Total: -50.32 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: -1.18 SS G_CDS: -2.34 Total: -3.52 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.42 -11.13 -44.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357069587.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.637 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds