Wall clock time and date at job start Tue Mar 31 2020 11:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38236 * 119.99689 * 2 1 4 4 C 1.38235 * 120.00001 * 180.02562 * 3 2 1 5 5 C 1.38236 * 120.00005 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99944 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47099 * 90.00416 * 6 5 4 8 8 C 1.53001 * 109.47202 * 179.97438 * 7 6 5 9 9 S 1.80999 * 109.47035 * 179.97438 * 8 7 6 10 10 C 1.76201 * 100.00085 * 180.02562 * 9 8 7 11 11 N 1.32391 * 126.25556 * 0.02562 * 10 9 8 12 12 N 1.28520 * 110.20275 * 180.02562 * 11 10 9 13 13 C 1.33102 * 109.74198 * 0.02562 * 12 11 10 14 14 C 1.39781 * 126.56059 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99890 * 174.27781 * 14 13 12 16 16 C 1.40077 * 119.99784 * 354.28435 * 14 13 12 17 17 N 1.30810 * 120.00426 * 6.02093 * 16 14 13 18 18 Si 1.86803 * 119.99666 * 186.02180 * 16 14 13 19 19 H 1.48502 * 109.47314 * 94.97975 * 18 16 14 20 20 H 1.48498 * 109.47398 * 214.97866 * 18 16 14 21 21 H 1.48504 * 109.47322 * 334.98114 * 18 16 14 22 22 N 1.36665 * 126.26074 * 179.72030 * 10 9 8 23 23 C 1.46500 * 127.15220 * 359.97175 * 22 10 9 24 24 C 1.38233 * 119.99700 * 0.25730 * 5 4 3 25 25 C 1.38235 * 120.00223 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.46971 * 90.00167 * 1 2 3 27 27 H 1.08999 * 109.46685 * 210.00185 * 1 2 3 28 28 H 1.09002 * 109.47344 * 330.00276 * 1 2 3 29 29 H 1.08000 * 120.00321 * 359.97264 * 3 2 1 30 30 H 1.07998 * 120.00303 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47746 * 330.00432 * 6 5 4 32 32 H 1.09006 * 109.47330 * 210.00058 * 6 5 4 33 33 H 1.08999 * 109.47449 * 59.99841 * 7 6 5 34 34 H 1.08994 * 109.47057 * 299.99815 * 7 6 5 35 35 H 1.09003 * 109.46748 * 60.00548 * 8 7 6 36 36 H 1.08994 * 109.47289 * 300.00071 * 8 7 6 37 37 H 0.97006 * 120.00409 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.47208 * 90.03122 * 23 22 10 39 39 H 1.08999 * 109.47328 * 210.03308 * 23 22 10 40 40 H 1.08998 * 109.47260 * 330.03270 * 23 22 10 41 41 H 1.08004 * 120.00006 * 179.72566 * 24 5 4 42 42 H 1.07998 * 119.99786 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 5.7787 0.0002 -0.0017 7 6 6.2898 0.0008 1.4404 8 6 7.8198 0.0003 1.4393 9 16 8.4244 0.0017 3.1453 10 6 10.1622 0.0016 2.8541 11 7 10.7579 0.0011 1.6718 12 7 12.0348 0.0006 1.8182 13 6 12.3387 0.0002 3.1140 14 6 13.6220 -0.0009 3.6682 15 1 13.7488 0.0921 4.7367 16 6 14.7434 -0.1225 2.8377 17 7 14.5984 -0.1164 1.5377 18 14 16.4462 -0.2933 3.5867 19 1 16.8025 -1.7317 3.6834 20 1 17.4367 0.4054 2.7289 21 1 16.4531 0.3106 4.9434 22 7 11.1415 0.0078 3.8073 23 6 10.9611 0.0164 5.2611 24 6 3.5806 -1.1970 -0.0054 25 6 2.1982 -1.1971 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6581 2.1325 -0.0004 30 1 4.1205 2.1326 -0.0010 31 1 6.1417 0.8900 -0.5161 32 1 6.1417 -0.8900 -0.5154 33 1 5.9269 -0.8889 1.9549 34 1 5.9268 0.8909 1.9541 35 1 8.1830 0.8900 0.9248 36 1 8.1824 -0.8900 0.9256 37 1 15.3750 -0.2010 0.9625 38 1 10.9174 -1.0091 5.6279 39 1 11.7989 0.5340 5.7282 40 1 10.0326 0.5307 5.5090 41 1 4.1206 -2.1323 -0.0099 42 1 1.6583 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357069587.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:14 Heat of formation + Delta-G solvation = 50.672107 kcal Electronic energy + Delta-G solvation = -22149.673021 eV Core-core repulsion = 18834.163136 eV Total energy + Delta-G solvation = -3315.509885 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.45707 -40.34914 -36.44625 -35.62860 -35.15326 -33.26333 -31.76499 -31.32377 -29.38147 -28.25096 -27.44050 -25.84024 -23.56924 -23.15722 -22.75121 -22.07318 -21.37964 -19.26336 -17.90189 -17.30396 -16.89556 -16.82806 -16.51682 -16.19107 -15.91630 -15.69511 -15.45283 -15.05517 -14.57582 -14.24484 -14.15414 -13.97937 -13.83726 -13.51875 -13.48173 -13.10629 -12.99367 -12.87580 -12.83715 -12.74398 -12.38908 -11.97973 -11.93858 -11.77412 -11.73825 -11.60755 -11.56907 -11.42844 -10.58298 -10.37077 -10.28026 -9.78316 -9.33224 -8.56061 -8.52802 -6.59082 0.36988 0.54455 0.56443 1.19038 1.31939 1.41241 1.58519 1.61003 2.18150 2.43742 2.50887 2.87068 3.32277 3.68300 3.85871 4.02704 4.06906 4.09188 4.20484 4.31001 4.34599 4.35418 4.44305 4.60750 4.62830 4.63314 4.70401 4.85581 4.88406 4.88833 4.89400 4.95811 5.03318 5.06331 5.25141 5.26951 5.31426 5.36051 5.55993 5.56618 5.75102 5.78786 6.02919 6.18272 6.21409 6.75031 6.91681 8.40479 8.63510 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.039847 B = 0.002014 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.520800 B =13899.304841 C =14271.784119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.103 4.103 3 C -0.129 4.129 4 C -0.124 4.124 5 C -0.095 4.095 6 C -0.071 4.071 7 C -0.082 4.082 8 C -0.086 4.086 9 S -0.017 6.017 10 C 0.056 3.944 11 N -0.331 5.331 12 N -0.389 5.389 13 C 0.315 3.685 14 C -0.473 4.473 15 H 0.103 0.897 16 C 0.028 3.972 17 N -0.788 5.788 18 Si 1.008 2.992 19 H -0.263 1.263 20 H -0.270 1.270 21 H -0.246 1.246 22 N -0.523 5.523 23 C 0.094 3.906 24 C -0.124 4.124 25 C -0.129 4.129 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.136 0.864 30 H 0.129 0.871 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.284 0.716 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.129 0.871 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.401 -0.016 1.839 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 C -0.147 4.147 4 C -0.142 4.142 5 C -0.095 4.095 6 C -0.110 4.110 7 C -0.122 4.122 8 C -0.236 4.236 9 S 0.210 5.790 10 C -0.318 4.318 11 N -0.176 5.176 12 N -0.236 5.236 13 C 0.069 3.931 14 C -0.513 4.513 15 H 0.121 0.879 16 C -0.192 4.192 17 N -0.413 5.413 18 Si 0.826 3.174 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.169 1.169 22 N -0.224 5.224 23 C -0.049 4.049 24 C -0.142 4.142 25 C -0.147 4.147 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.154 0.846 30 H 0.147 0.853 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.147 0.853 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.765 -0.008 1.139 22.794 hybrid contribution 1.685 -0.070 0.162 1.694 sum -21.080 -0.078 1.301 21.121 Atomic orbital electron populations 1.20821 0.89635 1.03508 1.02920 1.20274 0.97422 0.93128 0.99446 1.21286 0.94109 0.98425 1.00872 1.21276 0.94713 0.97967 1.00238 1.19918 0.95326 0.93697 1.00591 1.20527 0.90853 1.03798 0.95810 1.21251 0.89310 1.03873 0.97729 1.23437 0.99835 1.05734 0.94564 1.84164 0.87173 1.94924 1.12761 1.26467 0.97406 1.18706 0.89217 1.74404 1.03267 1.18868 1.21050 1.75311 1.02430 1.31687 1.14161 1.22068 0.87687 0.95912 0.87446 1.18627 0.86943 1.49686 0.96015 0.87868 1.27007 1.05622 0.91930 0.94684 1.70163 1.33750 1.31684 1.05749 0.84829 0.73936 0.79312 0.79300 1.18808 1.19462 1.16896 1.46400 1.04785 1.63406 1.07822 1.21846 1.03892 1.03352 0.75802 1.21277 0.94716 0.97967 1.00245 1.21286 0.94106 0.98427 1.00875 0.90542 0.90835 0.90832 0.84623 0.85278 0.90439 0.90455 0.90374 0.90346 0.90375 0.90392 0.90524 0.90765 0.89319 0.89103 0.85291 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.24 0.71 -0.45 16 2 C -0.10 -1.64 5.88 -19.86 -0.12 -1.76 16 3 C -0.13 -2.16 9.70 22.27 0.22 -1.94 16 4 C -0.12 -2.31 9.70 22.27 0.22 -2.09 16 5 C -0.10 -1.88 5.13 -19.87 -0.10 -1.98 16 6 C -0.07 -1.44 5.35 29.85 0.16 -1.28 16 7 C -0.08 -1.85 5.20 30.60 0.16 -1.70 16 8 C -0.09 -2.68 5.22 71.98 0.38 -2.31 16 9 S -0.02 -0.62 21.78 -56.49 -1.23 -1.85 16 10 C 0.06 2.75 8.09 179.18 1.45 4.20 16 11 N -0.33 -19.15 11.62 -56.18 -0.65 -19.80 16 12 N -0.39 -24.80 10.50 -55.01 -0.58 -25.38 16 13 C 0.32 18.38 7.53 133.23 1.00 19.38 16 14 C -0.47 -25.62 9.05 23.09 0.21 -25.41 16 15 H 0.10 4.95 7.27 -2.91 -0.02 4.93 16 16 C 0.03 1.47 5.49 85.29 0.47 1.94 16 17 N -0.79 -45.25 11.96 21.85 0.26 -44.99 16 18 Si 1.01 38.08 29.57 68.60 2.03 40.11 16 19 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 20 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 22 N -0.52 -25.78 3.26 -543.62 -1.77 -27.55 16 23 C 0.09 3.33 10.88 127.77 1.39 4.72 16 24 C -0.12 -2.31 9.70 22.27 0.22 -2.10 16 25 C -0.13 -2.16 9.70 22.27 0.22 -1.94 16 26 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 28 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 29 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 31 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 32 H 0.08 1.55 8.08 -2.38 -0.02 1.53 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.08 2.64 8.14 -2.40 -0.02 2.62 16 37 H 0.28 14.70 8.30 -92.70 -0.77 13.93 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.09 2.94 7.49 -2.39 -0.02 2.92 16 40 H 0.09 2.75 7.85 -2.39 -0.02 2.73 16 41 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 42 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -75.75 370.98 5.64 -70.12 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 1.01 Total: 22.07 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 6.57 Total: -12.72 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -2.74 Total: -117.73 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -1.23 Total: -1.85 kcal Total: -75.75 5.64 -70.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357069587.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.788 kcal (2) G-P(sol) polarization free energy of solvation -75.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds