Wall clock time and date at job start Tue Mar 31 2020 11:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00456 * 2 1 4 4 N 1.46504 * 109.47031 * 124.99556 * 3 2 1 5 5 C 1.46496 * 119.99686 * 88.08692 * 4 3 2 6 6 C 1.50697 * 109.47347 * 94.53431 * 5 4 3 7 7 H 1.07997 * 119.99785 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00217 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99901 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00062 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46934 * 90.00425 * 10 8 6 12 12 H 1.48499 * 109.46943 * 210.00347 * 10 8 6 13 13 H 1.48495 * 109.47055 * 330.00410 * 10 8 6 14 14 C 1.34779 * 120.00038 * 268.08533 * 4 3 2 15 15 O 1.21673 * 119.99613 * 5.29842 * 14 4 3 16 16 C 1.46804 * 119.99674 * 185.29652 * 14 4 3 17 17 O 1.35279 * 125.55704 * 6.35662 * 16 14 4 18 18 C 1.32614 * 109.96231 * 179.89468 * 17 16 14 19 19 C 1.39047 * 107.79218 * 0.12335 * 18 17 16 20 20 C 1.36461 * 125.55107 * 186.04045 * 16 14 4 21 21 C 1.50696 * 126.89898 * 359.97438 * 20 16 14 22 22 C 1.47103 * 121.78461 * 179.81682 * 19 18 17 23 23 O 1.21305 * 122.44970 * 168.67425 * 22 19 18 24 24 C 1.52172 * 115.10238 * 348.69400 * 22 19 18 25 25 C 1.53203 * 108.37789 * 42.54695 * 24 22 19 26 26 C 1.50749 * 129.37840 * 180.26371 * 18 17 16 27 27 H 1.07995 * 119.99441 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00347 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99551 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46737 * 4.99702 * 3 2 1 31 31 H 1.08998 * 109.47173 * 244.99554 * 3 2 1 32 32 H 1.09008 * 109.47174 * 214.53455 * 5 4 3 33 33 H 1.09002 * 109.47275 * 334.53002 * 5 4 3 34 34 H 0.96998 * 119.99635 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.46954 * 90.02559 * 21 20 16 36 36 H 1.08999 * 109.47301 * 210.02449 * 21 20 16 37 37 H 1.08997 * 109.46988 * 330.02525 * 21 20 16 38 38 H 1.09002 * 109.68230 * 282.82868 * 24 22 19 39 39 H 1.08996 * 109.71544 * 162.29185 * 24 22 19 40 40 H 1.08997 * 109.22802 * 174.86782 * 25 24 22 41 41 H 1.08993 * 109.22588 * 55.49751 * 25 24 22 42 42 H 1.09004 * 109.49926 * 279.30106 * 26 18 17 43 43 H 1.08999 * 109.50420 * 39.37709 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.3454 0.7870 0.9815 6 6 5.2981 1.8984 0.6233 7 1 4.9331 2.9093 0.5174 8 6 6.6356 1.6246 0.4306 9 7 7.0800 0.3935 0.5590 10 14 7.8163 3.0022 -0.0142 11 1 8.3723 3.5977 1.2274 12 1 8.9233 2.4576 -0.8408 13 1 7.0920 4.0461 -0.7827 14 6 2.6061 1.8575 2.3104 15 8 1.4554 2.2216 2.4650 16 6 3.5720 1.9908 3.4078 17 8 4.8983 1.7380 3.3234 18 6 5.4772 1.9611 4.4955 19 6 4.4911 2.3740 5.3847 20 6 3.2793 2.3956 4.6777 21 6 1.9260 2.7855 5.2137 22 6 4.7988 2.7020 6.7853 23 8 4.0006 3.2503 7.5158 24 6 6.1918 2.3036 7.2506 25 6 7.1905 2.6588 6.1445 26 6 6.9262 1.8243 4.8880 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1316 0.0895 31 1 2.6215 1.4024 -0.9313 32 1 4.6585 0.3284 1.9196 33 1 4.3491 0.0364 0.1912 34 1 8.0209 0.2009 0.4231 35 1 1.4260 1.9037 5.6144 36 1 2.0479 3.5251 6.0051 37 1 1.3251 3.2098 4.4094 38 1 6.2221 1.2310 7.4420 39 1 6.4444 2.8463 8.1615 40 1 8.2027 2.4637 6.4986 41 1 7.0940 3.7165 5.8999 42 1 7.1506 0.7774 5.0924 43 1 7.5587 2.1799 4.0746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359430388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:21 Heat of formation + Delta-G solvation = -43.305417 kcal Electronic energy + Delta-G solvation = -27555.795833 eV Core-core repulsion = 23761.165155 eV Total energy + Delta-G solvation = -3794.630678 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.45542 -39.15460 -38.75231 -35.72295 -35.69959 -33.61137 -33.40408 -32.20424 -29.72363 -28.67686 -27.56069 -27.37962 -25.47367 -23.34509 -22.73410 -22.54201 -20.43121 -19.47705 -19.22720 -18.26982 -16.90541 -16.60912 -16.06243 -15.79520 -15.71424 -14.97044 -14.79854 -14.59331 -14.38140 -14.20354 -14.00393 -13.78124 -13.43509 -12.93686 -12.79693 -12.69079 -12.61306 -12.41045 -12.30225 -11.89817 -11.63656 -11.49374 -11.32271 -11.19056 -11.08921 -10.89681 -10.86774 -10.72536 -10.23474 -9.84509 -9.63793 -9.40716 -9.24745 -9.05462 -8.59359 -8.11412 -7.74361 -6.21558 -4.26288 1.34547 1.72916 2.51796 2.99956 3.13909 3.15314 3.23915 3.28641 3.79175 3.85455 4.22283 4.30574 4.63441 4.77707 4.85435 4.94770 5.12277 5.21239 5.29212 5.34875 5.36857 5.49900 5.53410 5.66072 5.73690 5.81599 5.90160 5.93138 6.02570 6.07623 6.11392 6.19584 6.27385 6.36634 6.49163 6.59047 6.78572 6.89305 7.06903 7.16018 7.29382 7.49237 7.71750 7.73354 8.00727 8.14760 8.70358 8.83485 9.38549 10.85594 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.006727 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.768428 B = 4161.516331 C = 6538.636890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C 0.146 3.854 4 N -0.584 5.584 5 C 0.235 3.765 6 C -0.523 4.523 7 H 0.058 0.942 8 C 0.069 3.931 9 N -0.890 5.890 10 Si 0.889 3.111 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.600 3.400 15 O -0.548 6.548 16 C -0.076 4.076 17 O -0.075 6.075 18 C 0.080 3.920 19 C -0.303 4.303 20 C -0.050 4.050 21 C -0.092 4.092 22 C 0.431 3.569 23 O -0.463 6.463 24 C -0.163 4.163 25 C -0.109 4.109 26 C -0.049 4.049 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 -0.067 7.160 7.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.179 4.179 3 C 0.023 3.977 4 N -0.313 5.313 5 C 0.116 3.884 6 C -0.562 4.562 7 H 0.076 0.924 8 C -0.133 4.133 9 N -0.528 5.528 10 Si 0.716 3.284 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.389 3.611 15 O -0.430 6.430 16 C -0.127 4.127 17 O 0.036 5.964 18 C 0.021 3.979 19 C -0.305 4.305 20 C -0.053 4.053 21 C -0.148 4.148 22 C 0.310 3.690 23 O -0.339 6.339 24 C -0.201 4.201 25 C -0.147 4.147 26 C -0.085 4.085 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.092 0.908 42 H 0.120 0.880 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.339 0.180 7.253 7.378 hybrid contribution 0.991 0.521 -0.401 1.190 sum -0.347 0.701 6.852 6.897 Atomic orbital electron populations 1.23750 0.95812 1.01434 1.01332 1.23374 0.96152 0.99273 0.99141 1.20473 0.92195 0.95147 0.89889 1.48158 1.15939 1.57626 1.09546 1.19614 0.75539 0.94766 0.98487 1.21374 0.92635 0.94511 1.47686 0.92352 1.24832 0.97883 0.95476 0.95149 1.69927 1.15339 1.18320 1.49245 0.86642 0.80734 0.82315 0.78701 1.20518 1.21026 1.19825 1.16610 0.85178 0.78130 0.81212 1.90729 1.17599 1.52904 1.81775 1.21912 0.81682 1.12869 0.96281 1.84469 1.19578 1.62205 1.30188 1.23896 0.96046 0.94278 0.83711 1.20845 0.93881 1.17996 0.97787 1.20023 0.96131 0.97988 0.91144 1.20408 0.91233 1.01509 1.01663 1.21912 0.88137 0.73726 0.85185 1.90496 1.51804 1.33519 1.58093 1.22373 0.93687 1.04065 0.99966 1.21530 0.99434 1.00748 0.92981 1.20342 0.87049 1.02625 0.98515 0.88564 0.88921 0.87434 0.90240 0.89281 0.93756 0.94193 0.92646 0.91392 0.91062 0.89386 0.88026 0.88853 0.89221 0.90827 0.88018 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.65 14.32 29.01 0.42 -2.23 16 2 C -0.16 -2.59 9.85 -36.03 -0.35 -2.95 16 3 C 0.15 2.64 5.81 -5.19 -0.03 2.61 16 4 N -0.58 -12.42 2.45 -177.93 -0.44 -12.85 16 5 C 0.24 5.51 4.75 -5.20 -0.02 5.48 16 6 C -0.52 -13.17 7.81 -34.44 -0.27 -13.44 16 7 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 8 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -23.15 13.29 55.43 0.74 -22.41 16 10 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 14 C 0.60 13.14 7.60 -12.80 -0.10 13.04 16 15 O -0.55 -12.22 14.28 5.21 0.07 -12.15 16 16 C -0.08 -1.61 6.64 -36.76 -0.24 -1.85 16 17 O -0.08 -1.60 6.24 7.15 0.04 -1.55 16 18 C 0.08 1.41 7.41 -33.98 -0.25 1.16 16 19 C -0.30 -5.36 6.10 -105.22 -0.64 -6.00 16 20 C -0.05 -0.98 6.21 -104.49 -0.65 -1.63 16 21 C -0.09 -1.62 9.71 36.00 0.35 -1.27 16 22 C 0.43 6.71 7.09 -29.98 -0.21 6.49 16 23 O -0.46 -8.30 16.88 5.54 0.09 -8.21 16 24 C -0.16 -1.75 6.16 -27.05 -0.17 -1.91 16 25 C -0.11 -1.11 5.80 -26.56 -0.15 -1.26 16 26 C -0.05 -0.64 6.24 -27.79 -0.17 -0.81 16 27 H 0.10 1.34 7.84 -52.49 -0.41 0.93 16 28 H 0.09 1.14 8.06 -52.48 -0.42 0.72 16 29 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.08 1.42 7.09 -51.93 -0.37 1.06 16 31 H 0.09 1.56 8.09 -51.93 -0.42 1.14 16 32 H 0.04 1.10 5.90 -51.92 -0.31 0.80 16 33 H 0.04 0.97 8.04 -51.93 -0.42 0.55 16 34 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.21 7.20 -51.93 -0.37 0.84 16 37 H 0.09 1.62 6.32 -51.93 -0.33 1.30 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -29.68 360.65 -7.65 -37.33 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.98 Total: 2.60 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -2.60 Total: -2.92 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.30 Total: -35.26 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.21 Total: -21.91 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.68 -7.65 -37.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359430388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.978 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds