Wall clock time and date at job start Tue Mar 31 2020 11:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00456 * 2 1 4 4 N 1.46504 * 109.47031 * 124.99556 * 3 2 1 5 5 C 1.46496 * 119.99686 * 88.08692 * 4 3 2 6 6 C 1.50697 * 109.47347 * 94.53431 * 5 4 3 7 7 H 1.07997 * 119.99785 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00217 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99901 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00062 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46934 * 90.00425 * 10 8 6 12 12 H 1.48499 * 109.46943 * 210.00347 * 10 8 6 13 13 H 1.48495 * 109.47055 * 330.00410 * 10 8 6 14 14 C 1.34779 * 120.00038 * 268.08533 * 4 3 2 15 15 O 1.21673 * 119.99613 * 5.29842 * 14 4 3 16 16 C 1.46804 * 119.99674 * 185.29652 * 14 4 3 17 17 O 1.35279 * 125.55704 * 6.35662 * 16 14 4 18 18 C 1.32614 * 109.96231 * 179.89468 * 17 16 14 19 19 C 1.39047 * 107.79218 * 0.12335 * 18 17 16 20 20 C 1.36461 * 125.55107 * 186.04045 * 16 14 4 21 21 C 1.50696 * 126.89898 * 359.97438 * 20 16 14 22 22 C 1.47103 * 121.78461 * 179.81682 * 19 18 17 23 23 O 1.21305 * 122.44970 * 168.67425 * 22 19 18 24 24 C 1.52172 * 115.10238 * 348.69400 * 22 19 18 25 25 C 1.53203 * 108.37789 * 42.54695 * 24 22 19 26 26 C 1.50749 * 129.37840 * 180.26371 * 18 17 16 27 27 H 1.07995 * 119.99441 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00347 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99551 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46737 * 4.99702 * 3 2 1 31 31 H 1.08998 * 109.47173 * 244.99554 * 3 2 1 32 32 H 1.09008 * 109.47174 * 214.53455 * 5 4 3 33 33 H 1.09002 * 109.47275 * 334.53002 * 5 4 3 34 34 H 0.96998 * 119.99635 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.46954 * 90.02559 * 21 20 16 36 36 H 1.08999 * 109.47301 * 210.02449 * 21 20 16 37 37 H 1.08997 * 109.46988 * 330.02525 * 21 20 16 38 38 H 1.09002 * 109.68230 * 282.82868 * 24 22 19 39 39 H 1.08996 * 109.71544 * 162.29185 * 24 22 19 40 40 H 1.08997 * 109.22802 * 174.86782 * 25 24 22 41 41 H 1.08993 * 109.22588 * 55.49751 * 25 24 22 42 42 H 1.09004 * 109.49926 * 279.30106 * 26 18 17 43 43 H 1.08999 * 109.50420 * 39.37709 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.3454 0.7870 0.9815 6 6 5.2981 1.8984 0.6233 7 1 4.9331 2.9093 0.5174 8 6 6.6356 1.6246 0.4306 9 7 7.0800 0.3935 0.5590 10 14 7.8163 3.0022 -0.0142 11 1 8.3723 3.5977 1.2274 12 1 8.9233 2.4576 -0.8408 13 1 7.0920 4.0461 -0.7827 14 6 2.6061 1.8575 2.3104 15 8 1.4554 2.2216 2.4650 16 6 3.5720 1.9908 3.4078 17 8 4.8983 1.7380 3.3234 18 6 5.4772 1.9611 4.4955 19 6 4.4911 2.3740 5.3847 20 6 3.2793 2.3956 4.6777 21 6 1.9260 2.7855 5.2137 22 6 4.7988 2.7020 6.7853 23 8 4.0006 3.2503 7.5158 24 6 6.1918 2.3036 7.2506 25 6 7.1905 2.6588 6.1445 26 6 6.9262 1.8243 4.8880 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3587 2.1316 0.0895 31 1 2.6215 1.4024 -0.9313 32 1 4.6585 0.3284 1.9196 33 1 4.3491 0.0364 0.1912 34 1 8.0209 0.2009 0.4231 35 1 1.4260 1.9037 5.6144 36 1 2.0479 3.5251 6.0051 37 1 1.3251 3.2098 4.4094 38 1 6.2221 1.2310 7.4420 39 1 6.4444 2.8463 8.1615 40 1 8.2027 2.4637 6.4986 41 1 7.0940 3.7165 5.8999 42 1 7.1506 0.7774 5.0924 43 1 7.5587 2.1799 4.0746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359430388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:21 Heat of formation + Delta-G solvation = -58.638265 kcal Electronic energy + Delta-G solvation = -27556.460715 eV Core-core repulsion = 23761.165155 eV Total energy + Delta-G solvation = -3795.295561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.91726 -40.68981 -40.10790 -37.33545 -36.79163 -35.16261 -34.96200 -33.91418 -30.95073 -29.85110 -29.34766 -28.88210 -26.94025 -25.08767 -24.08860 -23.76462 -21.74349 -20.86418 -20.61918 -19.66480 -18.67197 -18.20753 -17.54224 -17.43379 -17.01402 -16.52216 -16.14614 -15.97781 -15.87510 -15.46207 -15.30711 -15.05369 -14.89436 -14.36049 -14.29476 -14.11846 -14.06557 -13.78401 -13.69036 -13.34040 -13.13107 -13.03688 -12.77538 -12.57398 -12.49824 -12.25373 -12.11454 -12.04461 -11.91794 -11.71410 -11.18640 -10.75869 -10.66112 -10.54206 -10.34522 -9.72573 -9.31752 -8.15705 -6.27255 -0.01495 0.24827 1.24035 1.38416 1.43024 1.51177 1.61923 1.82535 2.17142 2.31691 2.45107 3.07689 3.14727 3.43578 3.56927 3.69248 3.94562 3.96260 4.04222 4.12342 4.19174 4.27627 4.41995 4.47278 4.64450 4.65641 4.68825 4.74881 4.75848 4.78137 4.88052 4.98655 5.00607 5.10410 5.13796 5.22583 5.26277 5.35850 5.61113 5.65649 5.73651 5.79737 5.97136 6.07087 6.40350 6.52614 6.78787 7.09863 7.40874 8.90948 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.006727 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.768428 B = 4161.516331 C = 6538.636890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.184 4.184 3 C 0.143 3.857 4 N -0.588 5.588 5 C 0.254 3.746 6 C -0.531 4.531 7 H 0.041 0.959 8 C 0.037 3.963 9 N -0.911 5.911 10 Si 0.941 3.059 11 H -0.266 1.266 12 H -0.278 1.278 13 H -0.281 1.281 14 C 0.594 3.406 15 O -0.562 6.562 16 C -0.113 4.113 17 O -0.103 6.103 18 C 0.085 3.915 19 C -0.317 4.317 20 C -0.055 4.055 21 C -0.084 4.084 22 C 0.429 3.571 23 O -0.492 6.492 24 C -0.151 4.151 25 C -0.101 4.101 26 C -0.051 4.051 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.029 0.971 33 H 0.026 0.974 34 H 0.268 0.732 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.066 0.934 42 H 0.125 0.875 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 -0.110 8.600 8.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.203 4.203 3 C 0.021 3.979 4 N -0.316 5.316 5 C 0.134 3.866 6 C -0.569 4.569 7 H 0.059 0.941 8 C -0.164 4.164 9 N -0.550 5.550 10 Si 0.766 3.234 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.206 1.206 14 C 0.383 3.617 15 O -0.445 6.445 16 C -0.165 4.165 17 O 0.006 5.994 18 C 0.026 3.974 19 C -0.319 4.319 20 C -0.058 4.058 21 C -0.140 4.140 22 C 0.310 3.690 23 O -0.370 6.370 24 C -0.188 4.188 25 C -0.138 4.138 26 C -0.088 4.088 27 H 0.118 0.882 28 H 0.137 0.863 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.144 0.856 39 H 0.136 0.864 40 H 0.151 0.849 41 H 0.085 0.915 42 H 0.143 0.857 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.199 0.133 8.684 8.688 hybrid contribution 0.466 0.523 -0.834 1.089 sum 0.664 0.656 7.850 7.905 Atomic orbital electron populations 1.23992 0.95055 1.02860 0.97927 1.23214 0.96834 0.98058 1.02240 1.20598 0.91885 0.96513 0.88862 1.48179 1.15656 1.57464 1.10315 1.19215 0.76456 0.93932 0.96975 1.21381 0.93431 0.93979 1.48147 0.94089 1.25385 0.98916 0.97302 0.94836 1.69999 1.15859 1.19590 1.49578 0.85829 0.78934 0.79781 0.78827 1.19119 1.20369 1.20627 1.16806 0.85387 0.77946 0.81557 1.90690 1.18041 1.53646 1.82137 1.21891 0.82069 1.15637 0.96854 1.84411 1.19673 1.63187 1.32120 1.24925 0.98008 0.92030 0.82440 1.21266 0.93103 1.18108 0.99466 1.20415 0.97533 0.96899 0.90980 1.20356 0.90496 1.01935 1.01243 1.22587 0.90058 0.72641 0.83718 1.90484 1.53344 1.34908 1.58302 1.22417 0.89779 1.05785 1.00802 1.21590 1.01441 0.99660 0.91124 1.20718 0.83629 1.04723 0.99726 0.88162 0.86318 0.87563 0.90295 0.89392 0.95300 0.95562 0.92267 0.90380 0.90532 0.90499 0.85622 0.86371 0.84895 0.91486 0.85710 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 14.32 67.78 0.97 -3.43 16 2 C -0.18 -6.02 9.85 25.64 0.25 -5.77 16 3 C 0.14 5.38 5.81 85.63 0.50 5.88 16 4 N -0.59 -26.09 2.45 -835.09 -2.05 -28.14 16 5 C 0.25 12.41 4.75 85.63 0.41 12.81 16 6 C -0.53 -27.45 7.81 25.60 0.20 -27.25 16 7 H 0.04 2.22 7.81 -2.91 -0.02 2.20 16 8 C 0.04 1.85 5.46 84.65 0.46 2.31 16 9 N -0.91 -47.49 13.29 21.45 0.28 -47.20 16 10 Si 0.94 40.18 29.54 68.60 2.03 42.21 16 11 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 12 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 14 C 0.59 27.11 7.60 86.48 0.66 27.77 16 15 O -0.56 -25.94 14.28 -4.26 -0.06 -26.00 16 16 C -0.11 -5.01 6.64 24.10 0.16 -4.85 16 17 O -0.10 -4.52 6.24 2.67 0.02 -4.51 16 18 C 0.09 2.96 7.41 25.90 0.19 3.15 16 19 C -0.32 -11.11 6.10 -20.25 -0.12 -11.24 16 20 C -0.06 -2.21 6.21 -19.78 -0.12 -2.33 16 21 C -0.08 -3.03 9.71 71.23 0.69 -2.34 16 22 C 0.43 12.60 7.09 28.49 0.20 12.80 16 23 O -0.49 -17.10 16.88 -3.11 -0.05 -17.15 16 24 C -0.15 -2.62 6.16 30.39 0.19 -2.43 16 25 C -0.10 -1.63 5.80 30.71 0.18 -1.46 16 26 C -0.05 -1.22 6.24 29.91 0.19 -1.04 16 27 H 0.10 2.68 7.84 -2.91 -0.02 2.65 16 28 H 0.12 2.65 8.06 -2.91 -0.02 2.62 16 29 H 0.11 3.47 8.06 -2.91 -0.02 3.44 16 30 H 0.08 2.93 7.09 -2.39 -0.02 2.91 16 31 H 0.09 3.23 8.09 -2.39 -0.02 3.21 16 32 H 0.03 1.51 5.90 -2.38 -0.01 1.50 16 33 H 0.03 1.33 8.04 -2.39 -0.02 1.32 16 34 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 35 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 36 H 0.08 2.64 7.20 -2.39 -0.02 2.62 16 37 H 0.08 2.93 6.32 -2.39 -0.02 2.92 16 38 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.13 2.43 8.14 -2.38 -0.02 2.41 16 43 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -66.12 360.65 6.19 -59.93 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 1.02 Total: 18.27 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 5.00 Total: 2.60 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -1.76 Total: -75.35 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -0.10 Total: -47.66 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -66.12 6.19 -59.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359430388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.293 kcal (2) G-P(sol) polarization free energy of solvation -66.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds