Wall clock time and date at job start Tue Mar 31 2020 11:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00418 * 2 1 4 4 H 1.48501 * 109.47097 * 89.99507 * 3 2 1 5 5 H 1.48500 * 109.47252 * 209.99622 * 3 2 1 6 6 H 1.48507 * 109.46725 * 329.99708 * 3 2 1 7 7 C 1.38708 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99643 * 0.02562 * 7 2 1 9 9 O 1.34813 * 120.00074 * 179.97438 * 7 2 1 10 10 C 1.35522 * 116.99496 * 174.94676 * 9 7 2 11 11 C 1.38829 * 120.16388 * 5.61014 * 10 9 7 12 12 C 1.38028 * 120.07025 * 179.72009 * 11 10 9 13 13 C 1.38567 * 120.40137 * 0.55298 * 12 11 10 14 14 C 1.37830 * 120.32462 * 359.72608 * 13 12 11 15 15 C 1.39669 * 119.91884 * 359.97438 * 14 13 12 16 16 C 1.47536 * 120.19570 * 180.02562 * 15 14 13 17 17 O 1.21588 * 119.99655 * 179.97438 * 16 15 14 18 18 N 1.34776 * 120.00042 * 359.97438 * 16 15 14 19 19 C 1.46503 * 119.99872 * 180.02562 * 18 16 15 20 20 H 1.09002 * 110.98831 * 30.79791 * 19 18 16 21 21 C 1.55301 * 111.12363 * 266.55850 * 19 18 16 22 22 C 1.54388 * 102.25148 * 207.94776 * 21 19 18 23 23 O 1.43236 * 107.58694 * 21.35340 * 22 21 19 24 24 C 1.43648 * 109.97458 * 1.71342 * 23 22 21 25 25 H 1.09000 * 110.31063 * 94.48186 * 24 23 22 26 26 C 1.53001 * 110.39229 * 216.61578 * 24 23 22 27 27 C 1.52989 * 117.50150 * 4.38138 * 26 24 23 28 28 C 1.52995 * 117.49731 * 295.75485 * 26 24 23 29 29 H 0.97003 * 119.99520 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.96277 * 359.97438 * 11 10 9 31 31 H 1.08003 * 119.79904 * 180.25669 * 12 11 10 32 32 H 1.08003 * 119.84325 * 179.70405 * 13 12 11 33 33 H 1.07998 * 120.04209 * 180.02562 * 14 13 12 34 34 H 0.96993 * 120.00332 * 359.97438 * 18 16 15 35 35 H 1.09004 * 110.84637 * 326.12944 * 21 19 18 36 36 H 1.09000 * 110.85502 * 89.75332 * 21 19 18 37 37 H 1.08998 * 109.82763 * 261.84191 * 22 21 19 38 38 H 1.09001 * 109.82680 * 140.86700 * 22 21 19 39 39 H 1.09002 * 115.54633 * 150.09224 * 26 24 23 40 40 H 1.09000 * 117.49722 * 359.97438 * 27 26 24 41 41 H 1.09000 * 117.49907 * 145.02261 * 27 26 24 42 42 H 1.09003 * 117.50118 * 214.97993 * 28 26 24 43 43 H 1.09002 * 117.50198 * 0.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5469 1.4400 -0.6999 6 1 1.4467 2.6526 -0.7001 7 6 2.0087 -1.2012 0.0005 8 1 1.4686 -2.1365 0.0005 9 8 3.3568 -1.2013 0.0000 10 6 3.9720 -2.4041 0.1069 11 6 3.2242 -3.5737 0.0936 12 6 3.8533 -4.7979 0.1969 13 6 5.2311 -4.8697 0.3258 14 6 5.9890 -3.7187 0.3466 15 6 5.3670 -2.4730 0.2369 16 6 6.1724 -1.2370 0.2579 17 8 5.6272 -0.1545 0.1617 18 7 7.5124 -1.3079 0.3839 19 6 8.3120 -0.0806 0.4053 20 1 7.7495 0.7443 0.8426 21 6 8.8220 0.2801 -1.0165 22 6 10.1243 1.0511 -0.7117 23 8 10.5510 0.6770 0.6034 24 6 9.6521 -0.3001 1.1516 25 1 10.0280 -1.3063 0.9659 26 6 9.4674 -0.0717 2.6531 27 6 10.1447 1.1537 3.2698 28 6 10.6943 -0.2463 3.5504 29 1 -0.4849 0.8401 -0.0004 30 1 2.1495 -3.5257 -0.0017 31 1 3.2676 -5.7053 0.1819 32 1 5.7135 -5.8323 0.4107 33 1 7.0626 -3.7800 0.4469 34 1 7.9472 -2.1715 0.4611 35 1 9.0306 -0.6206 -1.5939 36 1 8.1061 0.9177 -1.5354 37 1 9.9359 2.1241 -0.7481 38 1 10.8909 0.7841 -1.4392 39 1 8.5007 -0.3702 3.0586 40 1 10.7222 1.7970 2.6059 41 1 9.6235 1.6618 4.0812 42 1 10.5347 -0.6593 4.5464 43 1 11.6331 -0.5236 3.0710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362071368.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:40 Heat of formation + Delta-G solvation = -49.366747 kcal Electronic energy + Delta-G solvation = -26660.587199 eV Core-core repulsion = 22865.693681 eV Total energy + Delta-G solvation = -3794.893517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40164 -39.54489 -38.09042 -36.59849 -36.54032 -34.37567 -32.48812 -31.45730 -30.21146 -29.24676 -28.73848 -25.36219 -23.93257 -23.18143 -22.46985 -21.83599 -21.05875 -20.52784 -19.96698 -18.02751 -17.94542 -16.95926 -16.68154 -16.25696 -15.27356 -15.15035 -14.97254 -14.55647 -14.49366 -14.22401 -14.07814 -13.93083 -13.69144 -13.56234 -12.96892 -12.70774 -12.39782 -12.38376 -12.20633 -11.74887 -11.58831 -11.50777 -11.43146 -11.32238 -11.09072 -10.86364 -10.75454 -10.40305 -10.27601 -10.08596 -9.68595 -9.65676 -9.14194 -8.92628 -8.84028 -8.43204 -7.52462 -6.50563 -4.15703 1.51900 2.14644 3.18938 3.28830 3.35125 3.46668 3.62859 3.67041 3.71351 4.30140 4.32047 4.43315 4.56945 4.69185 4.80547 4.82674 4.87944 4.92900 5.05567 5.06980 5.17746 5.30512 5.34126 5.37069 5.55008 5.56874 5.60253 5.67812 5.79586 5.84795 5.88482 5.99413 6.01357 6.05626 6.13558 6.33117 6.49776 6.63279 6.77656 6.82403 6.96617 7.10725 7.43795 7.63283 7.84634 7.91336 8.77262 8.85116 9.47500 10.54487 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012383 B = 0.004271 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.531385 B = 6554.157534 C = 7816.176190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.239 1.239 6 H -0.286 1.286 7 C -0.397 4.397 8 H 0.109 0.891 9 O -0.165 6.165 10 C 0.201 3.799 11 C -0.226 4.226 12 C -0.050 4.050 13 C -0.221 4.221 14 C -0.040 4.040 15 C -0.228 4.228 16 C 0.564 3.436 17 O -0.515 6.515 18 N -0.729 5.729 19 C 0.126 3.874 20 H 0.109 0.891 21 C -0.171 4.171 22 C 0.054 3.946 23 O -0.373 6.373 24 C 0.107 3.893 25 H 0.077 0.923 26 C -0.161 4.161 27 C -0.165 4.165 28 C -0.174 4.174 29 H 0.282 0.718 30 H 0.138 0.862 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.396 0.604 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.582 -3.718 1.873 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.133 4.133 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.162 1.162 6 H -0.212 1.212 7 C -0.472 4.472 8 H 0.126 0.874 9 O -0.065 6.065 10 C 0.144 3.856 11 C -0.246 4.246 12 C -0.069 4.069 13 C -0.240 4.240 14 C -0.059 4.059 15 C -0.233 4.233 16 C 0.354 3.646 17 O -0.390 6.390 18 N -0.384 5.384 19 C 0.019 3.981 20 H 0.127 0.873 21 C -0.210 4.210 22 C -0.023 4.023 23 O -0.292 6.292 24 C 0.049 3.951 25 H 0.095 0.905 26 C -0.180 4.180 27 C -0.201 4.201 28 C -0.211 4.211 29 H 0.092 0.908 30 H 0.156 0.844 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.231 0.769 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 19.193 -2.418 1.873 19.435 hybrid contribution 0.046 -0.022 -0.130 0.140 sum 19.239 -2.440 1.743 19.471 Atomic orbital electron populations 1.69638 1.05811 1.28987 1.45953 1.24495 0.94963 0.99292 0.94590 0.86201 0.81255 0.80440 0.79608 1.19929 1.16174 1.21215 1.20933 0.77097 0.96781 1.52392 0.87417 1.83775 1.22113 1.24968 1.75636 1.19014 0.90275 0.85826 0.90531 1.21292 1.01383 0.91640 1.10237 1.20975 0.94388 0.96785 0.94707 1.20542 0.94034 0.97336 1.12080 1.20758 0.98087 0.91278 0.95769 1.18806 0.91184 0.92724 1.20564 1.18217 0.80930 0.89475 0.75953 1.90860 1.70857 1.29378 1.47938 1.45682 1.06833 1.08076 1.77836 1.22440 0.91513 0.89682 0.94437 0.87314 1.23534 0.97334 1.01698 0.98455 1.23068 0.95419 0.99399 0.84406 1.88405 1.50183 1.60215 1.30402 1.22525 0.88396 0.92515 0.91641 0.90507 1.22437 0.97995 1.05241 0.92285 1.22868 1.03528 0.91118 1.02628 1.22927 0.97419 1.00526 1.00250 0.90787 0.84396 0.86798 0.86971 0.86865 0.76896 0.90138 0.89263 0.91005 0.91258 0.86545 0.87704 0.89088 0.88919 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.06 13.96 55.48 0.77 -24.29 16 2 C 0.07 2.06 5.49 -17.51 -0.10 1.97 16 3 Si 0.90 23.03 28.62 -169.99 -4.86 18.17 16 4 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.24 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.40 -11.24 9.95 30.91 0.31 -10.94 16 8 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 9 O -0.16 -4.47 6.67 -21.06 -0.14 -4.61 16 10 C 0.20 4.66 6.66 -38.60 -0.26 4.40 16 11 C -0.23 -4.68 9.16 -39.44 -0.36 -5.05 16 12 C -0.05 -0.83 10.03 -39.54 -0.40 -1.23 16 13 C -0.22 -3.31 10.02 -39.61 -0.40 -3.70 16 14 C -0.04 -0.61 9.54 -39.20 -0.37 -0.99 16 15 C -0.23 -4.48 5.89 -104.81 -0.62 -5.09 16 16 C 0.56 10.95 7.76 -12.47 -0.10 10.86 16 17 O -0.52 -12.41 14.80 -16.57 -0.25 -12.65 16 18 N -0.73 -10.21 5.16 -52.67 -0.27 -10.48 16 19 C 0.13 1.64 2.89 -65.68 -0.19 1.45 16 20 H 0.11 1.71 7.45 -51.93 -0.39 1.32 16 21 C -0.17 -1.98 6.72 -24.78 -0.17 -2.15 16 22 C 0.05 0.54 7.79 37.88 0.30 0.84 16 23 O -0.37 -4.29 9.48 -35.23 -0.33 -4.62 16 24 C 0.11 1.18 3.45 -25.70 -0.09 1.09 16 25 H 0.08 0.75 7.99 -51.93 -0.42 0.33 16 26 C -0.16 -1.76 5.71 -90.63 -0.52 -2.28 16 27 C -0.16 -1.71 9.89 -26.74 -0.26 -1.98 16 28 C -0.17 -1.64 10.24 -26.73 -0.27 -1.91 16 29 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.14 2.97 5.64 -52.48 -0.30 2.68 16 31 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.11 1.28 6.40 -52.49 -0.34 0.94 16 34 H 0.40 4.33 6.59 -40.82 -0.27 4.06 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.12 1.37 8.13 -51.93 -0.42 0.94 16 40 H 0.10 1.14 7.07 -51.93 -0.37 0.78 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -32.18 357.35 -8.91 -41.09 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.72 Total: 6.72 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -3.49 Total: -14.71 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.50 Total: -34.77 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.72 Total: -21.89 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.86 Total: 18.17 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.18 -8.91 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362071368.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.275 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds