Wall clock time and date at job start Tue Mar 31 2020 11:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86800 * 119.99578 * 2 1 4 4 H 1.48509 * 109.46966 * 269.99839 * 3 2 1 5 5 H 1.48494 * 109.47469 * 30.00113 * 3 2 1 6 6 H 1.48499 * 109.47117 * 150.00118 * 3 2 1 7 7 C 1.38653 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00091 * 359.97438 * 7 2 1 9 9 O 1.34829 * 119.99864 * 180.02562 * 7 2 1 10 10 C 1.35750 * 116.99882 * 185.05576 * 9 7 2 11 11 C 1.38906 * 120.06935 * 354.46207 * 10 9 7 12 12 C 1.38076 * 119.93045 * 180.02562 * 11 10 9 13 13 C 1.38320 * 120.06760 * 359.97438 * 12 11 10 14 14 C 1.38278 * 120.14419 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.96921 * 179.97438 * 14 13 12 16 16 C 1.50691 * 109.47134 * 89.99915 * 15 14 13 17 17 O 1.21283 * 120.00517 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99880 * 180.02562 * 16 15 14 19 19 C 1.47578 * 134.49214 * 180.02562 * 18 16 15 20 20 C 1.53941 * 86.11498 * 204.63486 * 19 18 16 21 21 O 1.42907 * 113.74505 * 90.73789 * 20 19 18 22 22 C 1.53003 * 113.74420 * 221.93761 * 20 19 18 23 23 C 1.53000 * 117.50340 * 246.82400 * 22 20 19 24 24 C 1.52993 * 117.50316 * 178.15991 * 22 20 19 25 25 C 1.47584 * 134.49134 * 359.97438 * 18 16 15 26 26 C 1.38122 * 120.06388 * 0.26837 * 14 13 12 27 27 H 0.96995 * 120.00301 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.03013 * 0.02619 * 11 10 9 29 29 H 1.07996 * 119.96293 * 179.97438 * 12 11 10 30 30 H 1.08005 * 119.92914 * 179.97438 * 13 12 11 31 31 H 1.09003 * 109.47053 * 329.99274 * 15 14 13 32 32 H 1.09000 * 109.46689 * 209.99847 * 15 14 13 33 33 H 1.08997 * 113.77274 * 90.33254 * 19 18 16 34 34 H 1.09003 * 113.77025 * 318.93439 * 19 18 16 35 35 H 0.96700 * 113.99375 * 309.66834 * 21 20 19 36 36 H 1.09003 * 115.54789 * 32.49267 * 22 20 19 37 37 H 1.08998 * 117.49547 * 359.97438 * 23 22 20 38 38 H 1.08998 * 117.50083 * 145.01528 * 23 22 20 39 39 H 1.09004 * 117.50174 * 214.98096 * 24 22 20 40 40 H 1.09007 * 117.49795 * 359.97438 * 24 22 20 41 41 H 1.08996 * 113.76712 * 41.06407 * 25 18 16 42 42 H 1.08994 * 113.76881 * 269.66829 * 25 18 16 43 43 H 1.08002 * 120.03746 * 179.70550 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4002 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4403 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2007 0.0000 10 6 3.9736 -2.4054 -0.1072 11 6 3.2235 -3.5745 -0.0952 12 6 3.8534 -4.7983 -0.2039 13 6 5.2299 -4.8610 -0.3251 14 6 5.9794 -3.6990 -0.3373 15 6 7.4789 -3.7719 -0.4690 16 6 7.8576 -3.7329 -1.9270 17 8 6.9949 -3.6543 -2.7758 18 7 9.1551 -3.7865 -2.2879 19 6 9.8712 -3.7716 -3.5782 20 6 11.0055 -4.5032 -2.8379 21 8 10.9002 -5.9275 -2.8874 22 6 12.4034 -3.9957 -3.1973 23 6 13.3295 -4.9513 -3.9523 24 6 13.5934 -4.6342 -2.4782 25 6 10.4304 -3.8828 -1.5513 26 6 5.3557 -2.4720 -0.2229 27 1 -0.4850 0.8400 -0.0004 28 1 2.1487 -3.5261 -0.0010 29 1 3.2708 -5.7076 -0.1942 30 1 5.7203 -5.8195 -0.4095 31 1 7.8380 -4.7003 -0.0249 32 1 7.9304 -2.9242 0.0465 33 1 10.1419 -2.7723 -3.9190 34 1 9.3935 -4.3717 -4.3528 35 1 10.0307 -6.2665 -2.6343 36 1 12.4710 -2.9346 -3.4376 37 1 12.9430 -5.9417 -4.1927 38 1 14.0065 -4.5190 -4.6891 39 1 14.4439 -3.9934 -2.2458 40 1 13.3803 -5.4157 -1.7487 41 1 10.3992 -4.5715 -0.7071 42 1 10.8651 -2.9161 -1.2974 43 1 5.9420 -1.5650 -0.2277 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375480373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:47 Heat of formation + Delta-G solvation = -15.265348 kcal Electronic energy + Delta-G solvation = -25527.069521 eV Core-core repulsion = 21733.654752 eV Total energy + Delta-G solvation = -3793.414770 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.10753 -39.38373 -38.52459 -36.78729 -36.40274 -35.18923 -32.44061 -32.18000 -29.79789 -29.25539 -27.15918 -26.43498 -25.13911 -23.71823 -22.66467 -21.76946 -20.83677 -20.51365 -19.20353 -17.69568 -17.58966 -17.12873 -16.72874 -16.27398 -15.83127 -15.60879 -15.27235 -15.04983 -14.56169 -14.17944 -13.96573 -13.77236 -13.53485 -13.47635 -13.30618 -12.76248 -12.57947 -12.40296 -12.19931 -12.17303 -11.87092 -11.81603 -11.68743 -11.29576 -11.13996 -10.83763 -10.76430 -10.74738 -10.70128 -10.14100 -10.05051 -9.77106 -9.36485 -8.99029 -8.84289 -8.13614 -7.33854 -6.38071 -4.04762 1.98073 2.29601 2.53777 2.69328 3.19127 3.23814 3.28198 3.42029 3.55527 3.99085 4.11036 4.23578 4.26650 4.44500 4.62587 4.69974 4.71815 4.76347 4.87772 5.02333 5.06885 5.08156 5.13155 5.29089 5.29646 5.31038 5.38890 5.53781 5.59463 5.64880 5.69877 5.73483 5.84453 5.85090 6.13562 6.26824 6.54368 6.80353 7.07708 7.11026 7.22370 7.33382 7.44338 7.62989 7.83692 8.07357 8.12900 8.97391 9.60145 10.69763 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023765 B = 0.002507 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.913795 B =11166.359999 C =11897.164380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.161 3.839 11 C -0.217 4.217 12 C -0.076 4.076 13 C -0.188 4.188 14 C -0.037 4.037 15 C -0.086 4.086 16 C 0.537 3.463 17 O -0.512 6.512 18 N -0.657 5.657 19 C 0.081 3.919 20 C 0.136 3.864 21 O -0.533 6.533 22 C -0.144 4.144 23 C -0.164 4.164 24 C -0.168 4.168 25 C 0.076 3.924 26 C -0.175 4.175 27 H 0.279 0.721 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.386 0.614 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.928 -9.728 -3.140 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.124 6.124 10 C 0.109 3.891 11 C -0.236 4.236 12 C -0.094 4.094 13 C -0.207 4.207 14 C -0.038 4.038 15 C -0.126 4.126 16 C 0.327 3.673 17 O -0.385 6.385 18 N -0.396 5.396 19 C -0.042 4.042 20 C 0.093 3.907 21 O -0.339 6.339 22 C -0.163 4.163 23 C -0.201 4.201 24 C -0.205 4.205 25 C -0.048 4.048 26 C -0.194 4.194 27 H 0.089 0.911 28 H 0.151 0.849 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.234 0.766 36 H 0.140 0.860 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 26.678 -9.255 -3.702 28.480 hybrid contribution -0.574 0.786 0.173 0.989 sum 26.104 -8.469 -3.529 27.669 Atomic orbital electron populations 1.69646 1.05524 1.28406 1.48336 1.24457 0.95028 0.98779 0.95771 0.86184 0.80279 0.81493 0.78952 1.19912 1.20802 1.18426 1.20763 0.76892 0.96625 1.52107 0.87637 1.83566 1.22603 1.25641 1.80636 1.19000 0.91468 0.85589 0.93068 1.21306 1.01142 0.91937 1.09194 1.20737 0.94072 0.96774 0.97798 1.20406 0.93971 0.96423 1.09880 1.18654 0.92093 0.93108 0.99901 1.20522 0.95081 1.04454 0.92525 1.20540 0.79776 0.75388 0.91632 1.90790 1.47450 1.47436 1.52870 1.50151 1.04328 1.75601 1.09548 1.23904 0.89841 1.01374 0.89070 1.22017 0.92845 0.81761 0.94074 1.86425 1.38693 1.18123 1.90687 1.22050 0.88326 0.98585 1.07291 1.22907 1.01589 1.00993 0.94638 1.22933 0.98328 1.03339 0.95925 1.23996 0.81747 1.01873 0.97141 1.19929 0.92053 0.96893 1.10550 0.91109 0.84931 0.87106 0.87744 0.88421 0.88367 0.89007 0.89423 0.76554 0.86021 0.87771 0.88856 0.88665 0.88332 0.89232 0.88595 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.96 13.96 55.48 0.77 -25.19 16 2 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 3 Si 0.91 22.24 28.62 -169.99 -4.86 17.37 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.39 -11.26 9.95 30.89 0.31 -10.96 16 8 H 0.11 3.12 5.44 -52.49 -0.29 2.83 16 9 O -0.22 -6.00 8.59 0.05 0.00 -6.00 16 10 C 0.16 3.89 6.65 -39.10 -0.26 3.63 16 11 C -0.22 -4.90 9.17 -39.39 -0.36 -5.26 16 12 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.19 -3.31 9.70 -39.54 -0.38 -3.69 16 14 C -0.04 -0.66 4.37 -104.65 -0.46 -1.11 16 15 C -0.09 -1.11 5.58 -29.04 -0.16 -1.27 16 16 C 0.54 7.73 8.05 -10.99 -0.09 7.64 16 17 O -0.51 -10.07 16.76 5.55 0.09 -9.98 16 18 N -0.66 -6.75 3.49 -178.27 -0.62 -7.38 16 19 C 0.08 0.71 8.20 -2.98 -0.02 0.68 16 20 C 0.14 0.92 1.69 -89.68 -0.15 0.76 16 21 O -0.53 -3.97 12.25 -35.23 -0.43 -4.41 16 22 C -0.14 -0.82 5.43 -90.62 -0.49 -1.31 16 23 C -0.16 -0.98 9.96 -26.69 -0.27 -1.24 16 24 C -0.17 -0.90 10.13 -26.70 -0.27 -1.17 16 25 C 0.08 0.50 7.96 -2.96 -0.02 0.47 16 26 C -0.17 -3.67 9.64 -39.39 -0.38 -4.05 16 27 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.13 3.11 5.64 -52.49 -0.30 2.82 16 29 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.10 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 32 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 33 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.39 2.32 8.89 45.56 0.41 2.73 16 36 H 0.12 0.55 8.13 -51.93 -0.42 0.13 16 37 H 0.10 0.75 7.41 -51.93 -0.38 0.36 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.58 8.14 -51.92 -0.42 0.15 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.51 8.10 -51.93 -0.42 0.09 16 43 H 0.11 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -34.67 368.05 -8.19 -42.86 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.18 Total: 4.18 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -3.51 Total: -17.01 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.15 Total: -32.57 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.34 Total: -20.39 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.86 Total: 17.37 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.67 -8.19 -42.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375480373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.599 kcal (2) G-P(sol) polarization free energy of solvation -34.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds