Wall clock time and date at job start Tue Mar 31 2020 11:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86800 * 119.99578 * 2 1 4 4 H 1.48509 * 109.46966 * 269.99839 * 3 2 1 5 5 H 1.48494 * 109.47469 * 30.00113 * 3 2 1 6 6 H 1.48499 * 109.47117 * 150.00118 * 3 2 1 7 7 C 1.38653 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00091 * 359.97438 * 7 2 1 9 9 O 1.34829 * 119.99864 * 180.02562 * 7 2 1 10 10 C 1.35750 * 116.99882 * 185.05576 * 9 7 2 11 11 C 1.38906 * 120.06935 * 354.46207 * 10 9 7 12 12 C 1.38076 * 119.93045 * 180.02562 * 11 10 9 13 13 C 1.38320 * 120.06760 * 359.97438 * 12 11 10 14 14 C 1.38278 * 120.14419 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.96921 * 179.97438 * 14 13 12 16 16 C 1.50691 * 109.47134 * 89.99915 * 15 14 13 17 17 O 1.21283 * 120.00517 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99880 * 180.02562 * 16 15 14 19 19 C 1.47578 * 134.49214 * 180.02562 * 18 16 15 20 20 C 1.53941 * 86.11498 * 204.63486 * 19 18 16 21 21 O 1.42907 * 113.74505 * 90.73789 * 20 19 18 22 22 C 1.53003 * 113.74420 * 221.93761 * 20 19 18 23 23 C 1.53000 * 117.50340 * 246.82400 * 22 20 19 24 24 C 1.52993 * 117.50316 * 178.15991 * 22 20 19 25 25 C 1.47584 * 134.49134 * 359.97438 * 18 16 15 26 26 C 1.38122 * 120.06388 * 0.26837 * 14 13 12 27 27 H 0.96995 * 120.00301 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.03013 * 0.02619 * 11 10 9 29 29 H 1.07996 * 119.96293 * 179.97438 * 12 11 10 30 30 H 1.08005 * 119.92914 * 179.97438 * 13 12 11 31 31 H 1.09003 * 109.47053 * 329.99274 * 15 14 13 32 32 H 1.09000 * 109.46689 * 209.99847 * 15 14 13 33 33 H 1.08997 * 113.77274 * 90.33254 * 19 18 16 34 34 H 1.09003 * 113.77025 * 318.93439 * 19 18 16 35 35 H 0.96700 * 113.99375 * 309.66834 * 21 20 19 36 36 H 1.09003 * 115.54789 * 32.49267 * 22 20 19 37 37 H 1.08998 * 117.49547 * 359.97438 * 23 22 20 38 38 H 1.08998 * 117.50083 * 145.01528 * 23 22 20 39 39 H 1.09004 * 117.50174 * 214.98096 * 24 22 20 40 40 H 1.09007 * 117.49795 * 359.97438 * 24 22 20 41 41 H 1.08996 * 113.76712 * 41.06407 * 25 18 16 42 42 H 1.08994 * 113.76881 * 269.66829 * 25 18 16 43 43 H 1.08002 * 120.03746 * 179.70550 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4002 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4403 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2007 0.0000 10 6 3.9736 -2.4054 -0.1072 11 6 3.2235 -3.5745 -0.0952 12 6 3.8534 -4.7983 -0.2039 13 6 5.2299 -4.8610 -0.3251 14 6 5.9794 -3.6990 -0.3373 15 6 7.4789 -3.7719 -0.4690 16 6 7.8576 -3.7329 -1.9270 17 8 6.9949 -3.6543 -2.7758 18 7 9.1551 -3.7865 -2.2879 19 6 9.8712 -3.7716 -3.5782 20 6 11.0055 -4.5032 -2.8379 21 8 10.9002 -5.9275 -2.8874 22 6 12.4034 -3.9957 -3.1973 23 6 13.3295 -4.9513 -3.9523 24 6 13.5934 -4.6342 -2.4782 25 6 10.4304 -3.8828 -1.5513 26 6 5.3557 -2.4720 -0.2229 27 1 -0.4850 0.8400 -0.0004 28 1 2.1487 -3.5261 -0.0010 29 1 3.2708 -5.7076 -0.1942 30 1 5.7203 -5.8195 -0.4095 31 1 7.8380 -4.7003 -0.0249 32 1 7.9304 -2.9242 0.0465 33 1 10.1419 -2.7723 -3.9190 34 1 9.3935 -4.3717 -4.3528 35 1 10.0307 -6.2665 -2.6343 36 1 12.4710 -2.9346 -3.4376 37 1 12.9430 -5.9417 -4.1927 38 1 14.0065 -4.5190 -4.6891 39 1 14.4439 -3.9934 -2.2458 40 1 13.3803 -5.4157 -1.7487 41 1 10.3992 -4.5715 -0.7071 42 1 10.8651 -2.9161 -1.2974 43 1 5.9420 -1.5650 -0.2277 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375480373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:47 Heat of formation + Delta-G solvation = -39.548941 kcal Electronic energy + Delta-G solvation = -25528.122537 eV Core-core repulsion = 21733.654752 eV Total energy + Delta-G solvation = -3794.467785 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.84579 -40.94983 -39.73754 -38.26027 -37.14665 -35.81480 -34.50223 -33.60575 -31.21101 -30.50673 -28.21144 -27.32492 -27.04769 -24.45743 -23.35075 -23.07089 -22.40883 -21.05524 -20.20648 -19.64532 -18.86671 -18.34215 -17.50059 -16.98892 -16.89579 -16.74170 -16.65000 -16.12993 -15.86522 -15.69124 -15.46327 -15.02301 -14.84414 -14.47753 -14.25453 -14.13192 -14.07430 -13.93461 -13.31910 -13.09635 -12.90037 -12.78901 -12.54074 -12.50316 -12.39877 -12.35171 -12.22663 -11.94538 -11.61730 -11.34816 -11.26878 -10.94465 -10.78072 -10.54966 -9.83781 -9.69708 -9.09554 -8.52166 -6.25102 0.43857 0.66728 1.27589 1.32797 1.48689 1.54527 1.78911 2.25822 2.72729 2.74010 2.96952 3.06371 3.12260 3.40903 3.60428 3.68035 3.77471 3.95025 4.04153 4.22078 4.25088 4.27887 4.36391 4.42435 4.44635 4.51075 4.56128 4.60450 4.63949 4.67077 4.81206 4.92017 4.94045 4.96849 5.15634 5.21272 5.33446 5.36507 5.41722 5.61399 5.68954 5.73903 5.88956 6.21783 6.51656 6.67329 6.81886 7.10904 7.56274 8.59633 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023765 B = 0.002507 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.913795 B =11166.359999 C =11897.164380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.119 3.881 11 C -0.240 4.240 12 C -0.077 4.077 13 C -0.170 4.170 14 C -0.030 4.030 15 C -0.081 4.081 16 C 0.535 3.465 17 O -0.581 6.581 18 N -0.653 5.653 19 C 0.070 3.930 20 C 0.145 3.855 21 O -0.543 6.543 22 C -0.145 4.145 23 C -0.175 4.175 24 C -0.160 4.160 25 C 0.080 3.920 26 C -0.182 4.182 27 H 0.285 0.715 28 H 0.108 0.892 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.391 0.609 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.264 -10.532 -2.481 33.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.477 4.477 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.070 3.930 11 C -0.259 4.259 12 C -0.095 4.095 13 C -0.189 4.189 14 C -0.031 4.031 15 C -0.120 4.120 16 C 0.326 3.674 17 O -0.460 6.460 18 N -0.389 5.389 19 C -0.052 4.052 20 C 0.103 3.897 21 O -0.349 6.349 22 C -0.163 4.163 23 C -0.212 4.212 24 C -0.197 4.197 25 C -0.041 4.041 26 C -0.202 4.202 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.160 0.840 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.241 0.759 36 H 0.155 0.845 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 31.098 -10.105 -3.026 32.838 hybrid contribution -1.658 0.706 -0.101 1.805 sum 29.440 -9.399 -3.127 31.062 Atomic orbital electron populations 1.69728 1.06833 1.29601 1.50217 1.25298 0.95945 1.02175 0.95550 0.85214 0.78881 0.77421 0.79148 1.19461 1.18717 1.18623 1.20714 0.78104 0.96156 1.52695 0.90254 1.83503 1.21265 1.27362 1.83307 1.19586 0.93050 0.85228 0.95139 1.21339 1.00221 0.93421 1.10935 1.21125 0.95436 0.96338 0.96619 1.21010 0.93293 0.98401 1.06172 1.19213 0.95222 0.91721 0.96903 1.20612 0.91345 1.07866 0.92226 1.20699 0.80478 0.74720 0.91533 1.90776 1.49652 1.51062 1.54497 1.50158 1.04198 1.73363 1.11176 1.24142 0.90350 1.02224 0.88524 1.21941 0.92760 0.81271 0.93749 1.86438 1.39197 1.18556 1.90759 1.22132 0.87602 0.99229 1.07340 1.22917 1.02223 1.00459 0.95616 1.22976 0.98435 1.03144 0.95134 1.24292 0.79007 1.03467 0.97357 1.20262 0.90700 0.98911 1.10292 0.90537 0.87407 0.84040 0.83323 0.84077 0.85907 0.87878 0.91100 0.75937 0.84532 0.89373 0.87925 0.87219 0.88765 0.87035 0.86484 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.80 13.96 21.61 0.30 -56.50 16 2 C 0.01 0.51 5.49 84.83 0.47 0.98 16 3 Si 0.97 47.15 28.62 68.60 1.96 49.11 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.40 -24.72 9.95 67.92 0.68 -24.05 16 8 H 0.08 5.13 5.44 -2.91 -0.02 5.11 16 9 O -0.25 -14.19 8.59 -22.73 -0.20 -14.38 16 10 C 0.12 5.97 6.65 22.58 0.15 6.12 16 11 C -0.24 -11.32 9.17 22.39 0.21 -11.11 16 12 C -0.08 -2.86 10.04 22.25 0.22 -2.63 16 13 C -0.17 -5.43 9.70 22.30 0.22 -5.22 16 14 C -0.03 -0.98 4.37 -19.88 -0.09 -1.07 16 15 C -0.08 -1.73 5.58 29.10 0.16 -1.57 16 16 C 0.53 13.88 8.05 87.65 0.71 14.58 16 17 O -0.58 -22.34 16.76 -3.04 -0.05 -22.39 16 18 N -0.65 -11.29 3.49 -840.15 -2.93 -14.22 16 19 C 0.07 1.08 8.20 86.48 0.71 1.79 16 20 C 0.15 1.50 1.69 -10.12 -0.02 1.48 16 21 O -0.54 -6.68 12.25 -148.98 -1.82 -8.50 16 22 C -0.14 -1.17 5.43 -10.80 -0.06 -1.23 16 23 C -0.18 -1.69 9.96 30.62 0.30 -1.39 16 24 C -0.16 -1.19 10.13 30.62 0.31 -0.88 16 25 C 0.08 0.68 7.96 86.49 0.69 1.37 16 26 C -0.18 -7.58 9.64 22.39 0.22 -7.37 16 27 H 0.28 16.03 8.31 -92.71 -0.77 15.26 16 28 H 0.11 5.53 5.64 -2.91 -0.02 5.51 16 29 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 30 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 31 H 0.14 1.82 8.09 -2.39 -0.02 1.80 16 32 H 0.12 2.09 8.08 -2.39 -0.02 2.07 16 33 H 0.10 1.36 8.09 -2.39 -0.02 1.35 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.39 3.66 8.89 -74.06 -0.66 3.00 16 36 H 0.14 0.72 8.13 -2.39 -0.02 0.70 16 37 H 0.09 1.15 7.41 -2.39 -0.02 1.13 16 38 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.12 0.62 8.10 -2.39 -0.02 0.60 16 43 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -81.77 368.05 2.51 -79.26 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.38 Total: 17.82 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 4.87 Total: -30.19 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -2.63 Total: -70.72 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -2.07 Total: -45.27 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.96 Total: 49.11 kcal Total: -81.77 2.51 -79.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375480373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.716 kcal (2) G-P(sol) polarization free energy of solvation -81.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds