Wall clock time and date at job start Tue Mar 31 2020 11:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38251 * 120.00683 * 2 1 4 4 C 1.38321 * 120.40279 * 180.02562 * 3 2 1 5 5 C 1.38271 * 120.40998 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00078 * 179.97438 * 5 4 3 7 7 C 1.39160 * 119.99720 * 359.71922 * 5 4 3 8 8 C 1.47957 * 120.19802 * 180.29892 * 7 5 4 9 9 O 1.21533 * 119.99691 * 269.46982 * 8 7 5 10 10 N 1.34773 * 120.00482 * 89.46898 * 8 7 5 11 11 C 1.46500 * 120.00686 * 185.10806 * 10 8 7 12 12 C 1.52993 * 109.47218 * 184.32832 * 11 10 8 13 13 C 1.50700 * 115.55069 * 64.93359 * 12 11 10 14 14 H 1.07998 * 119.99750 * 266.97281 * 13 12 11 15 15 C 1.37876 * 120.00055 * 86.97935 * 13 12 11 16 16 N 1.31518 * 119.99847 * 180.94834 * 15 13 12 17 17 Si 1.86802 * 119.99984 * 0.95283 * 15 13 12 18 18 H 1.48506 * 109.47074 * 84.94427 * 17 15 13 19 19 H 1.48500 * 109.46936 * 204.94168 * 17 15 13 20 20 H 1.48491 * 109.46982 * 324.94298 * 17 15 13 21 21 C 1.53003 * 117.50064 * 279.25851 * 12 11 10 22 22 C 1.53002 * 117.49846 * 210.59993 * 12 11 10 23 23 C 1.39227 * 120.00709 * 180.02562 * 2 1 3 24 24 C 1.47835 * 120.20054 * 359.97438 * 23 2 1 25 25 O 1.21456 * 120.00085 * 90.00141 * 24 23 2 26 26 O 1.34705 * 120.00256 * 270.00220 * 24 23 2 27 27 H 1.08996 * 109.47108 * 269.97904 * 1 2 3 28 28 H 1.08993 * 109.47161 * 29.98183 * 1 2 3 29 29 H 1.09004 * 109.46802 * 149.98269 * 1 2 3 30 30 H 1.08003 * 119.79528 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.79690 * 179.97438 * 4 3 2 32 32 H 1.09006 * 109.47025 * 90.00065 * 6 5 4 33 33 H 1.09004 * 109.46964 * 209.99701 * 6 5 4 34 34 H 1.09003 * 109.47548 * 330.00038 * 6 5 4 35 35 H 0.97002 * 119.99267 * 5.10578 * 10 8 7 36 36 H 1.08998 * 109.46467 * 304.33129 * 11 10 8 37 37 H 1.08998 * 109.46875 * 64.32517 * 11 10 8 38 38 H 0.96998 * 119.99688 * 179.97438 * 16 15 13 39 39 H 1.09004 * 117.49414 * 0.02562 * 21 12 11 40 40 H 1.08994 * 117.49919 * 145.01974 * 21 12 11 41 41 H 1.09001 * 117.50254 * 214.98213 * 22 12 11 42 42 H 1.09009 * 117.49505 * 359.97438 * 22 12 11 43 43 H 0.96698 * 116.99951 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5816 1.2068 -0.0005 5 6 4.2897 0.0192 -0.0016 6 6 5.7965 0.0403 -0.0028 7 6 3.6109 -1.1956 0.0037 8 6 4.3642 -2.4691 0.0093 9 8 4.6651 -3.0016 -1.0409 10 7 4.7167 -3.0385 1.1789 11 6 5.5576 -4.2381 1.1856 12 6 5.7188 -4.7398 2.6219 13 6 4.4559 -5.2227 3.2874 14 1 3.8675 -4.5435 3.8863 15 6 4.0518 -6.5317 3.1318 16 7 2.9398 -6.9483 3.6973 17 14 5.0838 -7.7136 2.1180 18 1 6.1531 -8.2931 2.9700 19 1 4.2200 -8.8038 1.5978 20 1 5.6984 -6.9834 0.9805 21 6 6.7586 -4.0423 3.5014 22 6 7.0232 -5.4561 2.9777 23 6 2.2033 -1.2057 -0.0005 24 6 1.4688 -2.4886 -0.0005 25 8 1.1666 -3.0154 -1.0524 26 8 1.1345 -3.0734 1.1660 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8899 -0.5141 30 1 1.6552 2.1307 -0.0004 31 1 4.1118 2.1477 -0.0009 32 1 6.1606 0.0450 1.0247 33 1 6.1719 -0.8443 -0.5173 34 1 6.1470 0.9356 -0.5165 35 1 4.4136 -2.6540 2.0162 36 1 5.0886 -5.0138 0.5802 37 1 6.5371 -3.9975 0.7726 38 1 2.6554 -7.8691 3.5875 39 1 7.3274 -3.2257 3.0567 40 1 6.5293 -3.9329 4.5613 41 1 6.9679 -6.2764 3.6935 42 1 7.7662 -5.5703 2.1883 43 1 1.3968 -2.6167 1.9770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404134123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:41 Heat of formation + Delta-G solvation = -80.253414 kcal Electronic energy + Delta-G solvation = -27286.267577 eV Core-core repulsion = 23490.034713 eV Total energy + Delta-G solvation = -3796.232864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.87682 -39.21237 -38.42619 -37.07293 -36.22634 -34.16361 -33.56316 -32.15000 -31.65136 -29.58259 -27.15004 -25.76881 -25.10009 -24.40387 -22.75490 -21.79537 -21.08533 -19.91746 -19.23071 -18.21089 -17.31206 -16.67698 -16.41368 -16.20087 -15.48997 -15.17111 -14.99478 -14.76677 -14.28498 -14.16722 -13.95101 -13.74944 -13.48274 -13.34386 -13.10669 -12.96073 -12.76369 -12.49605 -12.21151 -12.10181 -11.97768 -11.80314 -11.62540 -11.26900 -11.19906 -10.83473 -10.52753 -10.26595 -10.19579 -9.84818 -9.59076 -9.25312 -9.22511 -8.78312 -8.72594 -8.60575 -8.45755 -6.17502 -4.22821 0.73895 0.91346 2.23966 2.78018 3.17499 3.28154 3.32310 3.40105 3.42839 3.52344 4.38980 4.39223 4.43685 4.54400 4.65937 4.84617 4.87885 5.00549 5.11107 5.23859 5.26374 5.33003 5.40770 5.46847 5.56696 5.61329 5.75176 5.92038 5.94407 5.95630 5.99409 6.08636 6.12200 6.19374 6.34991 6.42043 6.53117 6.63876 6.87790 6.97409 7.01545 7.32004 7.63910 7.79765 7.91371 8.36549 8.50077 8.80305 9.45722 10.93482 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014779 B = 0.004953 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.141209 B = 5651.601749 C = 6649.921873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.054 4.054 3 C -0.107 4.107 4 C -0.097 4.097 5 C -0.057 4.057 6 C -0.122 4.122 7 C -0.074 4.074 8 C 0.543 3.457 9 O -0.530 6.530 10 N -0.690 5.690 11 C 0.153 3.847 12 C -0.016 4.016 13 C -0.493 4.493 14 H 0.078 0.922 15 C 0.084 3.916 16 N -0.890 5.890 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.294 1.294 20 H -0.260 1.260 21 C -0.178 4.178 22 C -0.193 4.193 23 C -0.136 4.136 24 C 0.540 3.460 25 O -0.449 6.449 26 O -0.485 6.485 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.404 0.596 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.266 0.734 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 18.943 -2.588 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.054 4.054 3 C -0.125 4.125 4 C -0.115 4.115 5 C -0.058 4.058 6 C -0.179 4.179 7 C -0.078 4.078 8 C 0.327 3.673 9 O -0.407 6.407 10 N -0.339 5.339 11 C 0.030 3.970 12 C -0.017 4.017 13 C -0.531 4.531 14 H 0.096 0.904 15 C -0.120 4.120 16 N -0.526 5.526 17 Si 0.706 3.294 18 H -0.202 1.202 19 H -0.220 1.220 20 H -0.185 1.185 21 C -0.215 4.215 22 C -0.231 4.231 23 C -0.139 4.139 24 C 0.377 3.623 25 O -0.333 6.333 26 O -0.294 6.294 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.238 0.762 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 0.525 17.684 -4.180 18.178 hybrid contribution 0.598 -0.257 0.340 0.734 sum 1.123 17.426 -3.840 17.880 Atomic orbital electron populations 1.20950 0.90154 1.03920 1.03253 1.19812 0.96305 0.91255 0.98013 1.21077 0.94125 0.97275 0.99979 1.21149 0.93999 0.97535 0.98786 1.19846 0.96592 0.91169 0.98156 1.20900 0.90097 1.03678 1.03185 1.19843 0.91899 0.94351 1.01675 1.18254 0.80155 0.84037 0.84881 1.90818 1.55128 1.63194 1.31598 1.45857 1.51467 1.29006 1.07523 1.21263 0.92006 0.85690 0.98052 1.19616 0.90981 0.99983 0.91135 1.20100 1.05232 0.96357 1.31361 0.90362 1.24938 0.94539 0.98106 0.94443 1.69857 1.21975 1.17351 1.43376 0.86896 0.80163 0.80881 0.81468 1.20237 1.22040 1.18485 1.22846 1.04579 0.94016 1.00052 1.22971 1.00619 0.96045 1.03464 1.20207 0.92964 0.94265 1.06422 1.20282 0.75988 0.82367 0.83622 1.90888 1.50365 1.64078 1.27953 1.84663 1.74472 1.53339 1.16912 0.90081 0.90382 0.91036 0.84826 0.84831 0.90187 0.90864 0.90758 0.76152 0.91228 0.93670 0.92388 0.90928 0.89335 0.88992 0.90746 0.72427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 9.62 36.01 0.35 -0.80 16 2 C -0.05 -0.59 5.91 -104.25 -0.62 -1.21 16 3 C -0.11 -0.95 9.68 -39.55 -0.38 -1.33 16 4 C -0.10 -0.88 9.68 -39.54 -0.38 -1.27 16 5 C -0.06 -0.68 5.91 -104.27 -0.62 -1.29 16 6 C -0.12 -1.27 9.61 36.01 0.35 -0.93 16 7 C -0.07 -1.12 5.66 -104.62 -0.59 -1.72 16 8 C 0.54 10.18 4.81 -12.28 -0.06 10.12 16 9 O -0.53 -12.18 17.09 5.34 0.09 -12.09 16 10 N -0.69 -12.47 5.45 -61.22 -0.33 -12.80 16 11 C 0.15 3.16 5.23 -4.05 -0.02 3.14 16 12 C -0.02 -0.34 0.85 -155.66 -0.13 -0.47 16 13 C -0.49 -12.51 9.29 -34.44 -0.32 -12.83 16 14 H 0.08 2.10 8.06 -52.49 -0.42 1.67 16 15 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 16 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 17 Si 0.88 21.62 24.75 -169.99 -4.21 17.41 16 18 H -0.28 -6.55 7.01 56.52 0.40 -6.15 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.26 -6.25 6.00 56.52 0.34 -5.91 16 21 C -0.18 -3.19 9.96 -26.69 -0.27 -3.45 16 22 C -0.19 -3.82 7.59 -26.69 -0.20 -4.03 16 23 C -0.14 -1.99 5.58 -104.65 -0.58 -2.57 16 24 C 0.54 9.61 5.39 34.66 0.19 9.79 16 25 O -0.45 -9.91 17.94 -19.23 -0.35 -10.26 16 26 O -0.49 -8.02 13.48 -40.51 -0.55 -8.57 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.07 0.80 7.07 -51.93 -0.37 0.43 16 30 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 31 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.94 7.08 -51.93 -0.37 0.58 16 34 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.40 6.49 8.43 -40.82 -0.34 6.15 16 36 H 0.07 1.67 6.77 -51.93 -0.35 1.32 16 37 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.09 1.93 7.06 -51.93 -0.37 1.56 16 42 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 43 H 0.42 4.62 8.96 45.56 0.41 5.03 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -35.46 365.85 -7.68 -43.15 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.23 Total: 9.54 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -3.39 Total: -6.64 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.44 Total: -38.06 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.80 Total: -30.91 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.21 Total: 17.41 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.46 -7.68 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404134123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.108 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds