Wall clock time and date at job start Tue Mar 31 2020 11:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38251 * 120.00683 * 2 1 4 4 C 1.38321 * 120.40279 * 180.02562 * 3 2 1 5 5 C 1.38271 * 120.40998 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00078 * 179.97438 * 5 4 3 7 7 C 1.39160 * 119.99720 * 359.71922 * 5 4 3 8 8 C 1.47957 * 120.19802 * 180.29892 * 7 5 4 9 9 O 1.21533 * 119.99691 * 269.46982 * 8 7 5 10 10 N 1.34773 * 120.00482 * 89.46898 * 8 7 5 11 11 C 1.46500 * 120.00686 * 185.10806 * 10 8 7 12 12 C 1.52993 * 109.47218 * 184.32832 * 11 10 8 13 13 C 1.50700 * 115.55069 * 64.93359 * 12 11 10 14 14 H 1.07998 * 119.99750 * 266.97281 * 13 12 11 15 15 C 1.37876 * 120.00055 * 86.97935 * 13 12 11 16 16 N 1.31518 * 119.99847 * 180.94834 * 15 13 12 17 17 Si 1.86802 * 119.99984 * 0.95283 * 15 13 12 18 18 H 1.48506 * 109.47074 * 84.94427 * 17 15 13 19 19 H 1.48500 * 109.46936 * 204.94168 * 17 15 13 20 20 H 1.48491 * 109.46982 * 324.94298 * 17 15 13 21 21 C 1.53003 * 117.50064 * 279.25851 * 12 11 10 22 22 C 1.53002 * 117.49846 * 210.59993 * 12 11 10 23 23 C 1.39227 * 120.00709 * 180.02562 * 2 1 3 24 24 C 1.47835 * 120.20054 * 359.97438 * 23 2 1 25 25 O 1.21456 * 120.00085 * 90.00141 * 24 23 2 26 26 O 1.34705 * 120.00256 * 270.00220 * 24 23 2 27 27 H 1.08996 * 109.47108 * 269.97904 * 1 2 3 28 28 H 1.08993 * 109.47161 * 29.98183 * 1 2 3 29 29 H 1.09004 * 109.46802 * 149.98269 * 1 2 3 30 30 H 1.08003 * 119.79528 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.79690 * 179.97438 * 4 3 2 32 32 H 1.09006 * 109.47025 * 90.00065 * 6 5 4 33 33 H 1.09004 * 109.46964 * 209.99701 * 6 5 4 34 34 H 1.09003 * 109.47548 * 330.00038 * 6 5 4 35 35 H 0.97002 * 119.99267 * 5.10578 * 10 8 7 36 36 H 1.08998 * 109.46467 * 304.33129 * 11 10 8 37 37 H 1.08998 * 109.46875 * 64.32517 * 11 10 8 38 38 H 0.96998 * 119.99688 * 179.97438 * 16 15 13 39 39 H 1.09004 * 117.49414 * 0.02562 * 21 12 11 40 40 H 1.08994 * 117.49919 * 145.01974 * 21 12 11 41 41 H 1.09001 * 117.50254 * 214.98213 * 22 12 11 42 42 H 1.09009 * 117.49505 * 359.97438 * 22 12 11 43 43 H 0.96698 * 116.99951 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5816 1.2068 -0.0005 5 6 4.2897 0.0192 -0.0016 6 6 5.7965 0.0403 -0.0028 7 6 3.6109 -1.1956 0.0037 8 6 4.3642 -2.4691 0.0093 9 8 4.6651 -3.0016 -1.0409 10 7 4.7167 -3.0385 1.1789 11 6 5.5576 -4.2381 1.1856 12 6 5.7188 -4.7398 2.6219 13 6 4.4559 -5.2227 3.2874 14 1 3.8675 -4.5435 3.8863 15 6 4.0518 -6.5317 3.1318 16 7 2.9398 -6.9483 3.6973 17 14 5.0838 -7.7136 2.1180 18 1 6.1531 -8.2931 2.9700 19 1 4.2200 -8.8038 1.5978 20 1 5.6984 -6.9834 0.9805 21 6 6.7586 -4.0423 3.5014 22 6 7.0232 -5.4561 2.9777 23 6 2.2033 -1.2057 -0.0005 24 6 1.4688 -2.4886 -0.0005 25 8 1.1666 -3.0154 -1.0524 26 8 1.1345 -3.0734 1.1660 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8899 -0.5141 30 1 1.6552 2.1307 -0.0004 31 1 4.1118 2.1477 -0.0009 32 1 6.1606 0.0450 1.0247 33 1 6.1719 -0.8443 -0.5173 34 1 6.1470 0.9356 -0.5165 35 1 4.4136 -2.6540 2.0162 36 1 5.0886 -5.0138 0.5802 37 1 6.5371 -3.9975 0.7726 38 1 2.6554 -7.8691 3.5875 39 1 7.3274 -3.2257 3.0567 40 1 6.5293 -3.9329 4.5613 41 1 6.9679 -6.2764 3.6935 42 1 7.7662 -5.5703 2.1883 43 1 1.3968 -2.6167 1.9770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404134123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:41 Heat of formation + Delta-G solvation = -106.341472 kcal Electronic energy + Delta-G solvation = -27287.398840 eV Core-core repulsion = 23490.034713 eV Total energy + Delta-G solvation = -3797.364127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.07468 -40.68726 -39.60619 -38.68930 -37.68830 -35.24536 -34.92874 -34.21383 -32.66224 -30.33888 -28.72001 -27.47083 -26.34297 -25.38466 -23.97011 -23.32895 -22.28137 -21.37985 -20.84183 -19.36352 -18.79917 -18.09726 -17.76750 -17.60934 -17.08735 -16.87468 -16.19133 -16.04841 -15.56441 -15.54180 -15.14395 -14.87024 -14.80126 -14.66687 -14.38432 -14.19867 -14.18838 -13.82187 -13.56862 -13.13463 -12.98680 -12.91498 -12.79088 -12.69631 -12.59222 -12.47235 -12.21099 -12.02244 -11.66563 -11.53663 -11.18567 -10.99975 -10.67543 -10.38460 -10.14185 -10.07655 -9.63797 -8.31356 -6.35749 -0.19723 0.06354 0.85754 1.27934 1.34008 1.36611 1.43000 2.00645 2.17223 2.33473 2.41502 3.04456 3.18732 3.29470 3.59312 3.60288 3.86183 3.98434 4.07537 4.08734 4.33130 4.39310 4.41700 4.44418 4.47275 4.66753 4.68432 4.71881 4.75485 4.77053 4.87185 5.05113 5.08806 5.10964 5.20373 5.26296 5.31406 5.35252 5.38584 5.50272 5.68222 5.77102 5.99281 6.26823 6.45285 6.59457 6.72381 7.06043 7.34856 8.82440 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014779 B = 0.004953 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.141209 B = 5651.601749 C = 6649.921873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.052 4.052 3 C -0.089 4.089 4 C -0.080 4.080 5 C -0.060 4.060 6 C -0.121 4.121 7 C -0.102 4.102 8 C 0.545 3.455 9 O -0.583 6.583 10 N -0.683 5.683 11 C 0.162 3.838 12 C -0.044 4.044 13 C -0.473 4.473 14 H 0.055 0.945 15 C 0.030 3.970 16 N -0.937 5.937 17 Si 0.919 3.081 18 H -0.257 1.257 19 H -0.310 1.310 20 H -0.254 1.254 21 C -0.141 4.141 22 C -0.197 4.197 23 C -0.157 4.157 24 C 0.543 3.457 25 O -0.509 6.509 26 O -0.502 6.502 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.040 0.960 30 H 0.180 0.820 31 H 0.179 0.821 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.105 0.895 35 H 0.413 0.587 36 H 0.026 0.974 37 H 0.064 0.936 38 H 0.262 0.738 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.577 23.555 -2.076 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.052 4.052 3 C -0.106 4.106 4 C -0.097 4.097 5 C -0.060 4.060 6 C -0.177 4.177 7 C -0.106 4.106 8 C 0.331 3.669 9 O -0.464 6.464 10 N -0.332 5.332 11 C 0.038 3.962 12 C -0.045 4.045 13 C -0.511 4.511 14 H 0.073 0.927 15 C -0.169 4.169 16 N -0.577 5.577 17 Si 0.746 3.254 18 H -0.182 1.182 19 H -0.238 1.238 20 H -0.178 1.178 21 C -0.178 4.178 22 C -0.234 4.234 23 C -0.159 4.159 24 C 0.384 3.616 25 O -0.396 6.396 26 O -0.314 6.314 27 H 0.118 0.882 28 H 0.127 0.873 29 H 0.059 0.941 30 H 0.197 0.803 31 H 0.196 0.804 32 H 0.113 0.887 33 H 0.059 0.941 34 H 0.123 0.877 35 H 0.250 0.750 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 2.334 22.337 -3.599 22.745 hybrid contribution 0.008 -1.543 0.242 1.561 sum 2.342 20.794 -3.357 21.193 Atomic orbital electron populations 1.21029 0.88932 1.03857 1.04459 1.20122 0.97275 0.90743 0.97089 1.21603 0.94306 0.97721 0.96965 1.21653 0.94228 0.97908 0.95906 1.20130 0.97467 0.90784 0.97650 1.20952 0.89100 1.03595 1.04097 1.19614 0.91796 0.93615 1.05550 1.18866 0.79247 0.84905 0.83865 1.90772 1.57279 1.65040 1.33325 1.45788 1.51091 1.28152 1.08122 1.20980 0.92776 0.85551 0.96894 1.19435 0.90155 1.03143 0.91773 1.20333 1.06138 0.95258 1.29370 0.92674 1.25609 0.95427 1.00055 0.95763 1.69981 1.24066 1.17462 1.46152 0.86220 0.79313 0.79059 0.80832 1.18157 1.23754 1.17763 1.22893 1.01365 0.93929 0.99606 1.23037 0.99564 0.96938 1.03893 1.19974 0.92652 0.93548 1.09719 1.20854 0.74843 0.83102 0.82821 1.90833 1.52909 1.65982 1.29916 1.84580 1.74487 1.54431 1.17864 0.88209 0.87344 0.94129 0.80299 0.80378 0.88697 0.94126 0.87662 0.75006 0.95525 0.91803 0.92915 0.87409 0.89099 0.90285 0.88562 0.70118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.62 71.24 0.68 -1.34 16 2 C -0.05 -1.02 5.91 -19.62 -0.12 -1.14 16 3 C -0.09 -1.09 9.68 22.29 0.22 -0.87 16 4 C -0.08 -1.01 9.68 22.30 0.22 -0.79 16 5 C -0.06 -1.24 5.91 -19.64 -0.12 -1.36 16 6 C -0.12 -2.15 9.61 71.24 0.68 -1.46 16 7 C -0.10 -3.06 5.66 -19.86 -0.11 -3.17 16 8 C 0.55 21.01 4.81 86.82 0.42 21.43 16 9 O -0.58 -28.20 17.09 -3.82 -0.07 -28.26 16 10 N -0.68 -24.98 5.45 -465.89 -2.54 -27.52 16 11 C 0.16 6.72 5.23 86.38 0.45 7.17 16 12 C -0.04 -1.82 0.85 -52.93 -0.04 -1.87 16 13 C -0.47 -24.45 9.29 25.60 0.24 -24.21 16 14 H 0.06 3.04 8.06 -2.91 -0.02 3.01 16 15 C 0.03 1.70 5.47 84.65 0.46 2.17 16 16 N -0.94 -57.26 13.96 21.45 0.30 -56.97 16 17 Si 0.92 45.53 24.75 68.60 1.70 47.23 16 18 H -0.26 -11.79 7.01 99.48 0.70 -11.09 16 19 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 20 H -0.25 -12.18 6.00 99.48 0.60 -11.58 16 21 C -0.14 -4.61 9.96 30.62 0.30 -4.30 16 22 C -0.20 -7.34 7.59 30.62 0.23 -7.10 16 23 C -0.16 -4.56 5.58 -19.88 -0.11 -4.67 16 24 C 0.54 20.53 5.39 70.36 0.38 20.91 16 25 O -0.51 -24.26 17.94 19.98 0.36 -23.90 16 26 O -0.50 -17.75 13.48 -56.15 -0.76 -18.50 16 27 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.11 1.07 8.08 -2.39 -0.02 1.05 16 29 H 0.04 0.92 7.07 -2.39 -0.02 0.90 16 30 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 31 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 32 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.04 1.00 7.08 -2.38 -0.02 0.98 16 34 H 0.10 1.19 8.09 -2.39 -0.02 1.17 16 35 H 0.41 13.27 8.43 -92.71 -0.78 12.49 16 36 H 0.03 1.32 6.77 -2.39 -0.02 1.31 16 37 H 0.06 2.40 8.09 -2.39 -0.02 2.38 16 38 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.11 2.83 8.14 -2.38 -0.02 2.82 16 40 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.08 3.17 7.06 -2.39 -0.02 3.16 16 42 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 43 H 0.44 10.34 8.96 -74.06 -0.66 9.68 16 Total: -1.00 -85.09 365.85 2.27 -82.82 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.51 Total: 25.73 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 3.79 Total: -0.62 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -2.24 Total: -84.48 kcal Atomic # 8 Polarization: -70.20 SS G_CDS: -0.46 Total: -70.67 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.70 Total: 47.23 kcal Total: -85.09 2.27 -82.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404134123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.526 kcal (2) G-P(sol) polarization free energy of solvation -85.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds