Wall clock time and date at job start Tue Mar 31 2020 12:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99878 * 2 1 4 4 O 1.20826 * 120.00501 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99926 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47256 * 180.02562 * 5 3 2 7 7 C 1.37092 * 119.99776 * 264.16929 * 6 5 3 8 8 H 1.08000 * 120.00449 * 199.79836 * 7 6 5 9 9 C 1.38962 * 120.00128 * 19.79713 * 7 6 5 10 10 N 1.31408 * 119.99682 * 13.90908 * 9 7 6 11 11 Si 1.86795 * 119.99928 * 193.90759 * 9 7 6 12 12 H 1.48510 * 109.47148 * 89.99793 * 11 9 7 13 13 H 1.48496 * 109.47142 * 209.99752 * 11 9 7 14 14 H 1.48500 * 109.47606 * 330.00310 * 11 9 7 15 15 C 1.34770 * 119.99987 * 84.16962 * 6 5 3 16 16 O 1.21288 * 120.00724 * 5.06841 * 15 6 5 17 17 C 1.50710 * 119.99972 * 185.07047 * 15 6 5 18 18 C 1.53002 * 115.54928 * 65.25569 * 17 15 6 19 19 C 1.52997 * 117.49997 * 210.93078 * 17 15 6 20 20 C 1.52998 * 117.49691 * 279.59046 * 17 15 6 21 21 H 1.09001 * 117.50164 * 359.97438 * 20 17 15 22 22 C 1.50704 * 117.49941 * 144.99546 * 20 17 15 23 23 C 1.38235 * 119.99713 * 59.72609 * 22 20 17 24 24 C 1.38241 * 119.99499 * 179.77121 * 23 22 20 25 25 C 1.38233 * 120.00134 * 0.50221 * 24 23 22 26 26 C 1.38231 * 119.99863 * 359.75198 * 25 24 23 27 27 C 1.38233 * 120.00054 * 239.99951 * 22 20 17 28 28 H 1.09000 * 109.47172 * 300.00002 * 1 2 3 29 29 H 1.08999 * 109.46887 * 59.99735 * 1 2 3 30 30 H 1.08996 * 109.46715 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47394 * 59.99907 * 5 3 2 32 32 H 1.09003 * 109.47093 * 300.00228 * 5 3 2 33 33 H 0.97002 * 119.99594 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.46808 * 52.63428 * 18 17 15 35 35 H 1.08996 * 109.46755 * 172.63045 * 18 17 15 36 36 H 1.08995 * 109.47044 * 292.63631 * 18 17 15 37 37 H 1.08998 * 117.49828 * 214.97668 * 19 17 15 38 38 H 1.09004 * 117.49705 * 359.97438 * 19 17 15 39 39 H 1.08000 * 120.00405 * 359.97438 * 23 22 20 40 40 H 1.07998 * 119.99369 * 180.23035 * 24 23 22 41 41 H 1.07999 * 119.99544 * 179.72838 * 25 24 23 42 42 H 1.08004 * 119.99979 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.00104 * 359.97438 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.2922 3.3032 -1.1798 8 1 4.8897 4.2028 -1.1748 9 6 3.8380 2.7775 -2.3833 10 7 2.8986 1.8586 -2.3861 11 14 4.5628 3.3773 -3.9971 12 1 5.7328 2.5364 -4.3571 13 1 3.5368 3.2817 -5.0664 14 1 4.9953 4.7903 -3.8508 15 6 4.0586 3.3593 1.1624 16 8 3.8737 2.7851 2.2146 17 6 4.3744 4.8329 1.1537 18 6 3.3206 5.7298 0.5009 19 6 5.1394 5.3986 2.3519 20 6 5.8413 5.2401 1.0009 21 1 6.5780 4.4423 0.9071 22 6 6.1376 6.4939 0.2190 23 6 5.6188 7.7061 0.6341 24 6 5.8945 8.8570 -0.0805 25 6 6.6804 8.7939 -1.2160 26 6 7.1948 7.5809 -1.6340 27 6 6.9235 6.4309 -0.9165 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 2.5819 1.4915 -3.2262 34 1 2.3456 5.5261 0.9436 35 1 3.5822 6.7753 0.6636 36 1 3.2833 5.5268 -0.5693 37 1 4.8921 6.4098 2.6749 38 1 5.4138 4.7050 3.1467 39 1 5.0008 7.7547 1.5185 40 1 5.4922 9.8046 0.2460 41 1 6.8921 9.6924 -1.7766 42 1 7.8085 7.5316 -2.5213 43 1 7.3255 5.4832 -1.2431 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413487259.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:54 Heat of formation + Delta-G solvation = -53.947317 kcal Electronic energy + Delta-G solvation = -27657.178752 eV Core-core repulsion = 23862.086606 eV Total energy + Delta-G solvation = -3795.092146 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.03454 -39.24492 -38.30393 -36.27852 -35.25874 -34.58263 -31.54217 -30.79951 -30.42077 -28.69819 -27.77004 -26.26186 -24.88191 -23.51364 -22.62469 -21.59443 -20.13952 -19.87581 -18.82133 -17.02562 -16.62462 -16.51117 -16.08911 -15.46343 -15.22041 -15.01931 -14.73552 -14.34157 -14.30193 -13.89079 -13.57738 -13.10460 -12.96716 -12.81893 -12.52386 -12.24789 -12.23323 -11.84084 -11.62568 -11.60456 -11.31831 -11.26724 -11.22751 -10.88515 -10.77091 -10.68919 -10.52581 -10.41155 -10.00541 -9.80602 -9.55492 -9.43285 -9.01161 -8.69385 -8.60451 -8.14194 -7.93521 -6.48075 -4.00698 1.56396 1.63354 3.06630 3.17758 3.20464 3.42751 3.71216 3.86281 4.01760 4.10082 4.34724 4.70361 4.96282 5.01019 5.09081 5.16797 5.30199 5.33371 5.46189 5.62442 5.70352 5.71095 5.78499 5.84623 5.94013 5.98405 6.13056 6.20947 6.23275 6.27356 6.38601 6.42178 6.46285 6.55995 6.62626 6.70593 6.73586 6.75872 6.94561 7.02242 7.23402 7.38158 7.47654 7.60719 8.27779 8.98432 9.12564 9.36252 9.75815 10.59142 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014757 B = 0.005254 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.905630 B = 5327.673837 C = 6570.536481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.487 3.513 4 O -0.502 6.502 5 C 0.156 3.844 6 N -0.422 5.422 7 C -0.320 4.320 8 H 0.109 0.891 9 C 0.036 3.964 10 N -0.877 5.877 11 Si 0.922 3.078 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.266 1.266 15 C 0.503 3.497 16 O -0.599 6.599 17 C -0.092 4.092 18 C -0.110 4.110 19 C -0.153 4.153 20 C -0.106 4.106 21 H 0.113 0.887 22 C -0.031 4.031 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.133 4.133 26 C -0.119 4.119 27 C -0.109 4.109 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.272 0.728 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 5.982 1.007 7.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.293 6.293 3 C 0.329 3.671 4 O -0.387 6.387 5 C 0.030 3.970 6 N -0.140 5.140 7 C -0.448 4.448 8 H 0.126 0.874 9 C -0.168 4.168 10 N -0.516 5.516 11 Si 0.748 3.252 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.190 1.190 15 C 0.292 3.708 16 O -0.485 6.485 17 C -0.095 4.095 18 C -0.167 4.167 19 C -0.191 4.191 20 C -0.125 4.125 21 H 0.131 0.869 22 C -0.031 4.031 23 C -0.138 4.138 24 C -0.140 4.140 25 C -0.151 4.151 26 C -0.138 4.138 27 C -0.127 4.127 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.144 0.856 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.142 5.882 1.341 7.318 hybrid contribution -0.179 0.273 -1.241 1.283 sum 3.963 6.154 0.100 7.321 Atomic orbital electron populations 1.22920 0.78794 1.01754 1.01582 1.86456 1.21600 1.35537 1.85721 1.23911 0.92256 0.80525 0.70441 1.90508 1.66525 1.36354 1.45298 1.20490 0.87214 0.85666 1.03591 1.43305 1.56694 1.07830 1.06152 1.19764 1.31241 1.11632 0.82123 0.87388 1.25240 0.94866 0.96935 0.99770 1.69719 1.25177 1.28841 1.27906 0.85976 0.78596 0.79520 0.81075 1.20215 1.21015 1.19034 1.19179 0.81414 0.86601 0.83613 1.90532 1.56639 1.69680 1.31654 1.21184 0.92760 0.94218 1.01357 1.21328 0.96529 0.96467 1.02338 1.23178 1.02768 1.01754 0.91361 1.21194 0.95897 0.96817 0.98598 0.86942 1.19133 0.96021 0.93143 0.94826 1.21076 1.00115 0.92163 1.00429 1.21041 0.99056 0.97986 0.95921 1.21040 0.99125 0.97617 0.97302 1.21084 1.00286 0.92758 0.99624 1.21031 0.98515 0.98512 0.94636 0.93204 0.92665 0.89652 0.85558 0.90285 0.91751 0.92564 0.92613 0.90164 0.88571 0.88018 0.85902 0.86518 0.86677 0.86426 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.18 10.57 -39.26 -0.41 -8.60 16 3 C 0.49 12.12 6.05 36.01 0.22 12.34 16 4 O -0.50 -13.91 15.75 -18.75 -0.30 -14.21 16 5 C 0.16 3.74 5.18 -5.19 -0.03 3.71 16 6 N -0.42 -10.42 2.17 -116.09 -0.25 -10.68 16 7 C -0.32 -7.76 7.86 -14.93 -0.12 -7.88 16 8 H 0.11 2.52 5.81 -52.49 -0.31 2.21 16 9 C 0.04 0.87 5.04 -17.46 -0.09 0.78 16 10 N -0.88 -22.36 8.92 55.50 0.50 -21.87 16 11 Si 0.92 19.21 29.57 -169.99 -5.03 14.19 16 12 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 15 C 0.50 12.22 6.70 -10.98 -0.07 12.15 16 16 O -0.60 -15.90 16.34 5.55 0.09 -15.81 16 17 C -0.09 -1.86 1.39 -155.66 -0.22 -2.07 16 18 C -0.11 -2.15 8.77 37.16 0.33 -1.83 16 19 C -0.15 -2.60 9.08 -26.70 -0.24 -2.84 16 20 C -0.11 -1.84 4.87 -91.73 -0.45 -2.29 16 21 H 0.11 1.97 8.14 -51.93 -0.42 1.54 16 22 C -0.03 -0.49 5.05 -104.62 -0.53 -1.02 16 23 C -0.12 -1.70 7.39 -39.58 -0.29 -2.00 16 24 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 25 C -0.13 -1.67 10.05 -39.59 -0.40 -2.06 16 26 C -0.12 -1.61 10.05 -39.59 -0.40 -2.01 16 27 C -0.11 -1.66 9.74 -39.58 -0.39 -2.04 16 28 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 29 H 0.05 1.01 8.13 -51.93 -0.42 0.58 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.13 3.00 6.37 -51.93 -0.33 2.67 16 32 H 0.08 1.79 7.53 -51.93 -0.39 1.40 16 33 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.92 5.00 -51.93 -0.26 0.66 16 36 H 0.08 1.74 6.58 -51.93 -0.34 1.40 16 37 H 0.10 1.39 6.19 -51.93 -0.32 1.07 16 38 H 0.10 1.77 7.99 -51.93 -0.41 1.35 16 39 H 0.12 1.61 5.28 -52.49 -0.28 1.33 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 43 H 0.12 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -30.83 354.46 -7.64 -38.48 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.58 Total: 10.32 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -2.00 Total: 2.84 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.24 Total: -32.54 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -0.62 Total: -38.62 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.83 -7.64 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413487259.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.471 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds