Wall clock time and date at job start Tue Mar 31 2020 12:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99878 * 2 1 4 4 O 1.20826 * 120.00501 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99926 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47256 * 180.02562 * 5 3 2 7 7 C 1.37092 * 119.99776 * 264.16929 * 6 5 3 8 8 H 1.08000 * 120.00449 * 199.79836 * 7 6 5 9 9 C 1.38962 * 120.00128 * 19.79713 * 7 6 5 10 10 N 1.31408 * 119.99682 * 13.90908 * 9 7 6 11 11 Si 1.86795 * 119.99928 * 193.90759 * 9 7 6 12 12 H 1.48510 * 109.47148 * 89.99793 * 11 9 7 13 13 H 1.48496 * 109.47142 * 209.99752 * 11 9 7 14 14 H 1.48500 * 109.47606 * 330.00310 * 11 9 7 15 15 C 1.34770 * 119.99987 * 84.16962 * 6 5 3 16 16 O 1.21288 * 120.00724 * 5.06841 * 15 6 5 17 17 C 1.50710 * 119.99972 * 185.07047 * 15 6 5 18 18 C 1.53002 * 115.54928 * 65.25569 * 17 15 6 19 19 C 1.52997 * 117.49997 * 210.93078 * 17 15 6 20 20 C 1.52998 * 117.49691 * 279.59046 * 17 15 6 21 21 H 1.09001 * 117.50164 * 359.97438 * 20 17 15 22 22 C 1.50704 * 117.49941 * 144.99546 * 20 17 15 23 23 C 1.38235 * 119.99713 * 59.72609 * 22 20 17 24 24 C 1.38241 * 119.99499 * 179.77121 * 23 22 20 25 25 C 1.38233 * 120.00134 * 0.50221 * 24 23 22 26 26 C 1.38231 * 119.99863 * 359.75198 * 25 24 23 27 27 C 1.38233 * 120.00054 * 239.99951 * 22 20 17 28 28 H 1.09000 * 109.47172 * 300.00002 * 1 2 3 29 29 H 1.08999 * 109.46887 * 59.99735 * 1 2 3 30 30 H 1.08996 * 109.46715 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47394 * 59.99907 * 5 3 2 32 32 H 1.09003 * 109.47093 * 300.00228 * 5 3 2 33 33 H 0.97002 * 119.99594 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.46808 * 52.63428 * 18 17 15 35 35 H 1.08996 * 109.46755 * 172.63045 * 18 17 15 36 36 H 1.08995 * 109.47044 * 292.63631 * 18 17 15 37 37 H 1.08998 * 117.49828 * 214.97668 * 19 17 15 38 38 H 1.09004 * 117.49705 * 359.97438 * 19 17 15 39 39 H 1.08000 * 120.00405 * 359.97438 * 23 22 20 40 40 H 1.07998 * 119.99369 * 180.23035 * 24 23 22 41 41 H 1.07999 * 119.99544 * 179.72838 * 25 24 23 42 42 H 1.08004 * 119.99979 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.00104 * 359.97438 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.2922 3.3032 -1.1798 8 1 4.8897 4.2028 -1.1748 9 6 3.8380 2.7775 -2.3833 10 7 2.8986 1.8586 -2.3861 11 14 4.5628 3.3773 -3.9971 12 1 5.7328 2.5364 -4.3571 13 1 3.5368 3.2817 -5.0664 14 1 4.9953 4.7903 -3.8508 15 6 4.0586 3.3593 1.1624 16 8 3.8737 2.7851 2.2146 17 6 4.3744 4.8329 1.1537 18 6 3.3206 5.7298 0.5009 19 6 5.1394 5.3986 2.3519 20 6 5.8413 5.2401 1.0009 21 1 6.5780 4.4423 0.9071 22 6 6.1376 6.4939 0.2190 23 6 5.6188 7.7061 0.6341 24 6 5.8945 8.8570 -0.0805 25 6 6.6804 8.7939 -1.2160 26 6 7.1948 7.5809 -1.6340 27 6 6.9235 6.4309 -0.9165 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 2.5819 1.4915 -3.2262 34 1 2.3456 5.5261 0.9436 35 1 3.5822 6.7753 0.6636 36 1 3.2833 5.5268 -0.5693 37 1 4.8921 6.4098 2.6749 38 1 5.4138 4.7050 3.1467 39 1 5.0008 7.7547 1.5185 40 1 5.4922 9.8046 0.2460 41 1 6.8921 9.6924 -1.7766 42 1 7.8085 7.5316 -2.5213 43 1 7.3255 5.4832 -1.2431 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413487259.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:53 Heat of formation + Delta-G solvation = -69.493774 kcal Electronic energy + Delta-G solvation = -27657.852897 eV Core-core repulsion = 23862.086606 eV Total energy + Delta-G solvation = -3795.766291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.63597 -40.91109 -39.81490 -37.78260 -37.09187 -36.52118 -33.44821 -31.87133 -31.56947 -30.40815 -29.30437 -27.88788 -26.75793 -24.69009 -24.02923 -22.96318 -21.78492 -21.29797 -20.58615 -18.75579 -18.43934 -17.86731 -17.70938 -17.27032 -16.97029 -16.42797 -16.13986 -16.09482 -15.65808 -15.29704 -15.07118 -14.56425 -14.29975 -14.25025 -14.16158 -13.92748 -13.67033 -13.42603 -13.21099 -13.08078 -12.98807 -12.85641 -12.67581 -12.55456 -12.38944 -12.14302 -11.97879 -11.78254 -11.58309 -11.49780 -11.36567 -10.94688 -10.86673 -10.44017 -9.87108 -9.69345 -9.32939 -8.35153 -5.92969 0.48986 0.60116 1.38442 1.45938 1.56185 1.65668 1.78734 2.20550 2.33022 2.67147 2.82656 3.14171 3.25621 3.66576 3.85287 3.99025 4.06199 4.21032 4.24271 4.32105 4.32794 4.34539 4.38713 4.39663 4.51410 4.67470 4.68965 4.75589 4.79540 4.79809 4.94132 4.98258 5.05334 5.13930 5.24451 5.26745 5.38650 5.49794 5.62624 5.68162 5.71262 5.72995 5.83746 6.21679 6.37862 7.08624 7.20991 7.47856 7.87501 8.71847 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014757 B = 0.005254 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.905630 B = 5327.673837 C = 6570.536481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.377 6.377 3 C 0.489 3.511 4 O -0.538 6.538 5 C 0.152 3.848 6 N -0.431 5.431 7 C -0.326 4.326 8 H 0.115 0.885 9 C -0.005 4.005 10 N -0.903 5.903 11 Si 0.984 3.016 12 H -0.267 1.267 13 H -0.292 1.292 14 H -0.258 1.258 15 C 0.489 3.511 16 O -0.633 6.633 17 C -0.123 4.123 18 C -0.095 4.095 19 C -0.135 4.135 20 C -0.088 4.088 21 H 0.102 0.898 22 C -0.051 4.051 23 C -0.128 4.128 24 C -0.121 4.121 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.129 4.129 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.270 0.730 34 H 0.034 0.966 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.137 0.863 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.466 8.109 0.275 9.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.332 3.668 4 O -0.426 6.426 5 C 0.026 3.974 6 N -0.148 5.148 7 C -0.453 4.453 8 H 0.132 0.868 9 C -0.206 4.206 10 N -0.542 5.542 11 Si 0.808 3.192 12 H -0.192 1.192 13 H -0.218 1.218 14 H -0.182 1.182 15 C 0.280 3.720 16 O -0.521 6.521 17 C -0.126 4.126 18 C -0.152 4.152 19 C -0.172 4.172 20 C -0.106 4.106 21 H 0.120 0.880 22 C -0.051 4.051 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.147 4.147 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.152 0.848 31 H 0.143 0.857 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.145 0.855 38 H 0.112 0.888 39 H 0.151 0.849 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.155 0.845 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.038 7.991 0.609 9.466 hybrid contribution -0.491 -0.422 -0.997 1.189 sum 4.547 7.569 -0.388 8.838 Atomic orbital electron populations 1.23284 0.76220 1.04842 1.01138 1.86422 1.24088 1.33813 1.85055 1.24001 0.92543 0.80767 0.69448 1.90476 1.67336 1.37639 1.47192 1.20541 0.87214 0.85992 1.03642 1.43529 1.56542 1.08080 1.06643 1.20001 1.31234 1.11878 0.82160 0.86752 1.26034 0.94957 0.97064 1.02532 1.69827 1.26194 1.29924 1.28289 0.85028 0.77745 0.79501 0.76911 1.19206 1.21809 1.18179 1.19946 0.80702 0.88377 0.82968 1.90481 1.58093 1.70940 1.32587 1.21092 0.94916 0.91619 1.04939 1.21178 0.95472 0.98270 1.00261 1.23277 1.00617 1.02742 0.90578 1.21124 0.93318 0.97349 0.98827 0.87976 1.19081 0.97679 0.92925 0.95447 1.21245 1.00190 0.92063 1.01035 1.21414 0.98394 0.98601 0.95501 1.21451 0.97892 0.98274 0.97144 1.21376 1.00392 0.92558 1.00061 1.21158 0.99168 0.99240 0.95105 0.93160 0.93647 0.84780 0.85699 0.89746 0.92024 0.94649 0.89305 0.92741 0.85537 0.88805 0.84906 0.83633 0.83732 0.84500 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 10.56 113.37 1.20 2.54 16 2 O -0.38 -16.57 10.57 -51.42 -0.54 -17.11 16 3 C 0.49 25.06 6.05 71.24 0.43 25.49 16 4 O -0.54 -30.87 15.75 21.96 0.35 -30.52 16 5 C 0.15 7.54 5.18 85.63 0.44 7.99 16 6 N -0.43 -21.98 2.17 -639.58 -1.39 -23.37 16 7 C -0.33 -16.10 7.86 84.04 0.66 -15.44 16 8 H 0.11 5.41 5.81 -2.91 -0.02 5.39 16 9 C -0.01 -0.25 5.04 84.93 0.43 0.17 16 10 N -0.90 -46.91 8.92 21.67 0.19 -46.72 16 11 Si 0.98 39.36 29.57 68.60 2.03 41.39 16 12 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 13 H -0.29 -11.97 7.11 99.48 0.71 -11.27 16 14 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 15 C 0.49 24.56 6.70 87.66 0.59 25.14 16 16 O -0.63 -34.79 16.34 -3.05 -0.05 -34.84 16 17 C -0.12 -4.99 1.39 -52.93 -0.07 -5.06 16 18 C -0.09 -3.73 8.77 71.98 0.63 -3.10 16 19 C -0.14 -4.46 9.08 30.62 0.28 -4.18 16 20 C -0.09 -2.99 4.87 -11.52 -0.06 -3.05 16 21 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 22 C -0.05 -1.54 5.05 -19.87 -0.10 -1.64 16 23 C -0.13 -3.25 7.39 22.27 0.16 -3.09 16 24 C -0.12 -2.61 10.05 22.27 0.22 -2.38 16 25 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 26 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 27 C -0.13 -3.73 9.74 22.27 0.22 -3.51 16 28 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 29 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 30 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 31 H 0.13 6.16 6.37 -2.39 -0.02 6.14 16 32 H 0.08 4.00 7.53 -2.39 -0.02 3.98 16 33 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 34 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 2.81 5.00 -2.39 -0.01 2.80 16 36 H 0.05 2.39 6.58 -2.39 -0.02 2.38 16 37 H 0.13 3.34 6.19 -2.39 -0.01 3.33 16 38 H 0.09 3.25 7.99 -2.38 -0.02 3.23 16 39 H 0.13 3.03 5.28 -2.91 -0.02 3.01 16 40 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 41 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 43 H 0.12 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -68.51 354.46 7.10 -61.41 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: 1.03 Total: 35.21 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 5.48 Total: 14.54 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -1.20 Total: -70.09 kcal Atomic # 8 Polarization: -82.22 SS G_CDS: -0.25 Total: -82.47 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -68.51 7.10 -61.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413487259.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.084 kcal (2) G-P(sol) polarization free energy of solvation -68.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds