Wall clock time and date at job start Tue Mar 31 2020 11:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99984 * 2 1 4 4 H 1.48508 * 109.46813 * 240.00045 * 3 2 1 5 5 H 1.48494 * 109.47107 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46955 * 120.00250 * 3 2 1 7 7 C 1.37878 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00128 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99724 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47137 * 184.28360 * 9 7 2 11 11 C 1.46899 * 110.99975 * 192.32492 * 10 9 7 12 12 C 1.50701 * 109.46875 * 171.77493 * 11 10 9 13 13 C 1.35108 * 126.07400 * 106.04749 * 12 11 10 14 14 N 1.35019 * 107.97213 * 179.89726 * 13 12 11 15 15 H 0.97002 * 125.92955 * 180.11959 * 14 13 12 16 16 N 1.40069 * 108.14182 * 0.36177 * 14 13 12 17 17 C 1.31609 * 108.11249 * 359.77623 * 16 14 13 18 18 C 1.48460 * 126.03467 * 179.97438 * 17 16 14 19 19 C 1.39329 * 122.76038 * 317.77709 * 18 17 16 20 20 C 1.33082 * 114.90926 * 179.83181 * 19 18 17 21 21 S 1.75814 * 109.91433 * 0.41954 * 20 19 18 22 22 C 1.34514 * 122.75455 * 138.07242 * 18 17 16 23 23 C 1.46895 * 110.99605 * 68.37468 * 10 9 7 24 24 C 1.52999 * 109.47339 * 57.49434 * 23 10 9 25 25 C 1.53003 * 117.49793 * 243.88035 * 24 23 10 26 26 C 1.53005 * 117.49775 * 175.22537 * 24 23 10 27 27 H 0.96997 * 120.00023 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46617 * 64.28828 * 9 7 2 29 29 H 1.08997 * 109.47014 * 304.28731 * 9 7 2 30 30 H 1.09007 * 109.46483 * 51.78040 * 11 10 9 31 31 H 1.08998 * 109.47356 * 291.78039 * 11 10 9 32 32 H 1.07998 * 126.01429 * 0.02983 * 13 12 11 33 33 H 1.07994 * 122.54700 * 0.04020 * 19 18 17 34 34 H 1.08005 * 125.04125 * 180.18131 * 20 19 18 35 35 H 1.08000 * 125.22570 * 359.94544 * 22 18 17 36 36 H 1.09001 * 109.47088 * 177.49844 * 23 10 9 37 37 H 1.09006 * 109.47456 * 297.49382 * 23 10 9 38 38 H 1.08999 * 115.54786 * 29.55366 * 24 23 10 39 39 H 1.08995 * 117.49945 * 0.02562 * 25 24 23 40 40 H 1.09009 * 117.49370 * 145.01872 * 25 24 23 41 41 H 1.09002 * 117.49468 * 214.98343 * 26 24 23 42 42 H 1.09002 * 117.50102 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2023 -3.6138 0.1023 11 6 1.5447 -4.8954 -0.1859 12 6 2.5826 -5.9848 -0.2701 13 6 2.8101 -6.9403 0.6576 14 7 3.8156 -7.7232 0.2114 15 1 4.1876 -8.4905 0.6738 16 7 4.2319 -7.2318 -1.0324 17 6 3.4919 -6.1841 -1.3269 18 6 3.5974 -5.3580 -2.5560 19 6 4.8196 -4.9727 -3.1028 20 6 4.7320 -4.2368 -4.2081 21 16 3.0432 -3.9751 -4.6211 22 6 2.5207 -4.9152 -3.2299 23 6 2.8449 -3.6372 1.4230 24 6 1.7730 -3.7388 2.5101 25 6 1.6408 -2.5659 3.4836 26 6 2.2465 -3.8895 3.9572 27 1 -0.4850 0.8400 0.0004 28 1 0.6829 -2.5906 -0.9263 29 1 0.5683 -2.5245 0.8488 30 1 1.0134 -4.8257 -1.1352 31 1 0.8374 -5.1281 0.6101 32 1 2.2795 -7.0585 1.5908 33 1 5.7661 -5.2529 -2.6649 34 1 5.5735 -3.8536 -4.7663 35 1 1.4933 -5.1078 -2.9584 36 1 3.5109 -4.4977 1.4879 37 1 3.4195 -2.7217 1.5638 38 1 0.8598 -4.2596 2.2225 39 1 2.3172 -1.7218 3.3494 40 1 0.6404 -2.3153 3.8368 41 1 1.6445 -4.5093 4.6217 42 1 3.3216 -3.9167 4.1348 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438124768.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:07 Heat of formation + Delta-G solvation = 144.323294 kcal Electronic energy + Delta-G solvation = -24547.453343 eV Core-core repulsion = 21236.004479 eV Total energy + Delta-G solvation = -3311.448865 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04905 -37.89616 -37.38311 -35.04766 -32.62243 -31.55277 -30.42937 -28.87506 -27.11524 -26.40849 -24.17704 -23.50985 -21.82906 -21.57245 -21.39668 -20.07200 -19.00696 -18.29111 -17.34402 -17.10743 -16.09040 -15.40583 -15.08733 -14.89705 -14.37421 -14.24357 -13.75516 -13.66805 -13.30456 -12.78842 -12.70445 -12.54859 -12.16507 -12.10092 -12.06330 -11.60881 -11.11203 -11.08038 -10.98743 -10.88591 -10.65864 -10.55822 -10.50078 -10.35566 -9.92319 -9.72028 -9.54321 -9.18268 -9.12696 -8.45509 -8.34321 -8.28233 -7.84256 -7.04527 -5.93254 -3.92335 1.27483 1.97560 2.01986 2.28683 2.66894 3.04945 3.37756 3.41907 3.45122 3.47897 4.37572 4.50743 4.84510 4.98691 5.24132 5.28749 5.30240 5.42761 5.49427 5.53115 5.59385 5.62782 5.72364 5.85544 5.96805 6.02595 6.12767 6.22310 6.32705 6.36014 6.43170 6.52038 6.54132 6.65178 6.70763 6.71592 6.84594 6.99775 7.37216 7.41907 7.52044 7.84075 7.91950 8.21297 8.32545 8.68033 9.14937 9.70771 11.17351 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.009635 B = 0.006020 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.386596 B = 4649.846517 C = 6864.385772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.494 4.494 8 H 0.059 0.941 9 C 0.194 3.806 10 N -0.520 5.520 11 C 0.124 3.876 12 C -0.195 4.195 13 C 0.053 3.947 14 N -0.482 5.482 15 H 0.436 0.564 16 N -0.293 5.293 17 C 0.157 3.843 18 C -0.020 4.020 19 C -0.107 4.107 20 C -0.222 4.222 21 S 0.111 5.889 22 C -0.171 4.171 23 C 0.101 3.899 24 C -0.168 4.168 25 C -0.158 4.158 26 C -0.195 4.195 27 H 0.259 0.741 28 H 0.021 0.979 29 H 0.004 0.996 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.172 0.828 33 H 0.136 0.864 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.198 -13.707 -0.799 14.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.533 4.533 8 H 0.077 0.923 9 C 0.069 3.931 10 N -0.242 5.242 11 C -0.005 4.005 12 C -0.206 4.206 13 C -0.094 4.094 14 N -0.190 5.190 15 H 0.279 0.721 16 N -0.117 5.117 17 C -0.011 4.011 18 C -0.034 4.034 19 C -0.138 4.138 20 C -0.358 4.358 21 S 0.375 5.625 22 C -0.309 4.309 23 C -0.028 4.028 24 C -0.188 4.188 25 C -0.195 4.195 26 C -0.233 4.233 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.022 0.978 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.189 0.811 33 H 0.154 0.846 34 H 0.179 0.821 35 H 0.182 0.818 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.597 -13.465 -2.729 14.835 hybrid contribution -0.038 0.342 2.571 2.594 sum 5.559 -13.123 -0.158 14.253 Atomic orbital electron populations 1.69935 1.05900 1.26504 1.51643 1.24894 0.94721 0.98842 0.95812 0.86706 0.79554 0.83423 0.78582 1.20264 1.21529 1.20490 1.21045 0.93251 0.89862 1.49092 0.92316 1.19712 0.90094 0.87233 0.96052 1.62339 1.33561 1.01731 1.26609 1.20369 0.91893 0.88110 1.00100 1.20160 1.04239 1.00987 0.95263 1.22271 0.93464 0.93705 0.99955 1.46075 1.29354 1.26974 1.16648 0.72067 1.77499 1.22938 1.13972 0.97273 1.20102 0.94058 0.92942 0.93952 1.16571 0.92431 1.00524 0.93846 1.19977 0.98342 0.99681 0.95827 1.25322 0.99728 1.07515 1.03190 1.84147 0.99623 1.52262 1.26506 1.25591 1.02502 1.03198 0.99593 1.21595 0.94392 1.00936 0.85852 1.22970 1.01906 1.02711 0.91180 1.22834 1.01669 0.91868 1.03157 1.22905 1.00295 1.02003 0.98082 0.93138 0.96113 0.97845 0.91022 0.95150 0.81102 0.84611 0.82134 0.81783 0.92787 0.90606 0.88806 0.88602 0.89805 0.90081 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.49 -13.46 8.50 -34.44 -0.29 -13.75 16 8 H 0.06 1.63 7.41 -52.48 -0.39 1.24 16 9 C 0.19 4.79 4.53 -4.97 -0.02 4.77 16 10 N -0.52 -10.63 4.69 -237.51 -1.11 -11.74 16 11 C 0.12 2.15 4.79 -4.98 -0.02 2.12 16 12 C -0.19 -3.02 4.49 -104.76 -0.47 -3.49 16 13 C 0.05 0.66 11.35 -17.26 -0.20 0.46 16 14 N -0.48 -5.75 7.35 30.42 0.22 -5.53 16 15 H 0.44 3.53 8.96 -182.62 -1.64 1.89 16 16 N -0.29 -4.52 12.74 33.43 0.43 -4.09 16 17 C 0.16 2.58 6.83 -82.77 -0.57 2.01 16 18 C -0.02 -0.32 5.65 -106.60 -0.60 -0.92 16 19 C -0.11 -1.64 10.01 -40.97 -0.41 -2.05 16 20 C -0.22 -3.07 11.19 28.94 0.32 -2.75 16 21 S 0.11 1.59 23.32 -107.50 -2.51 -0.92 16 22 C -0.17 -2.69 10.16 29.42 0.30 -2.39 16 23 C 0.10 1.91 5.27 -3.83 -0.02 1.89 16 24 C -0.17 -2.91 3.97 -90.62 -0.36 -3.27 16 25 C -0.16 -2.82 10.15 -26.69 -0.27 -3.09 16 26 C -0.20 -2.86 10.25 -26.69 -0.27 -3.13 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.02 0.56 7.91 -51.93 -0.41 0.15 16 29 H 0.00 0.10 6.62 -51.93 -0.34 -0.25 16 30 H 0.07 1.25 5.88 -51.92 -0.31 0.95 16 31 H 0.03 0.50 6.22 -51.93 -0.32 0.18 16 32 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 35 H 0.16 2.44 6.53 -52.49 -0.34 2.10 16 36 H 0.05 0.96 6.63 -51.93 -0.34 0.61 16 37 H 0.08 1.61 6.91 -51.93 -0.36 1.25 16 38 H 0.09 1.66 6.27 -51.93 -0.33 1.33 16 39 H 0.10 1.84 8.03 -51.93 -0.42 1.43 16 40 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 359.12 15.07 5.41 5.41 Total: -1.00 -30.95 359.12 -11.69 -42.65 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -6.87 Total: 5.10 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -2.98 Total: -22.06 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.27 Total: -46.81 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.51 Total: -0.92 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.95 -11.69 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438124768.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.971 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds