Wall clock time and date at job start Tue Mar 31 2020 11:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00140 * 2 1 4 4 O 1.20823 * 120.00114 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99819 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46790 * 180.02562 * 5 3 2 7 7 C 1.36881 * 119.99726 * 262.95720 * 6 5 3 8 8 H 1.07994 * 119.99962 * 136.14528 * 7 6 5 9 9 C 1.39044 * 119.99981 * 316.14002 * 7 6 5 10 10 N 1.31375 * 120.00221 * 350.49541 * 9 7 6 11 11 Si 1.86795 * 120.00172 * 170.49331 * 9 7 6 12 12 H 1.48500 * 109.47224 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47326 * 120.00133 * 11 9 7 14 14 H 1.48508 * 109.47244 * 240.00209 * 11 9 7 15 15 C 1.34770 * 120.00391 * 82.95927 * 6 5 3 16 16 O 1.21589 * 120.00110 * 348.49859 * 15 6 5 17 17 C 1.47732 * 120.00228 * 168.78386 * 15 6 5 18 18 C 1.39570 * 120.04543 * 326.87490 * 17 15 6 19 19 C 1.37911 * 119.75564 * 179.75037 * 18 17 15 20 20 C 1.38264 * 120.10812 * 0.51362 * 19 18 17 21 21 C 1.50700 * 119.73370 * 179.73329 * 20 19 18 22 22 C 1.38636 * 120.53864 * 359.75210 * 20 19 18 23 23 C 1.37952 * 119.93807 * 359.97438 * 22 20 19 24 24 C 1.51348 * 109.83802 * 179.97438 * 23 22 20 25 25 C 1.54353 * 105.15001 * 17.16574 * 24 23 22 26 26 C 1.51406 * 130.30046 * 179.97438 * 22 20 19 27 27 H 1.09001 * 109.47243 * 300.00449 * 1 2 3 28 28 H 1.09005 * 109.47123 * 60.00261 * 1 2 3 29 29 H 1.08997 * 109.47651 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47032 * 59.99965 * 5 3 2 31 31 H 1.08994 * 109.47132 * 299.99462 * 5 3 2 32 32 H 0.96998 * 119.99809 * 179.97438 * 10 9 7 33 33 H 1.08004 * 120.11791 * 0.02562 * 18 17 15 34 34 H 1.08000 * 119.94127 * 180.26392 * 19 18 17 35 35 H 1.09003 * 109.46750 * 270.02121 * 21 20 19 36 36 H 1.09004 * 109.46979 * 30.01329 * 21 20 19 37 37 H 1.08995 * 109.47463 * 150.02119 * 21 20 19 38 38 H 1.09001 * 110.30780 * 136.08736 * 24 23 22 39 39 H 1.08997 * 110.30514 * 258.25031 * 24 23 22 40 40 H 1.08999 * 110.82675 * 91.91617 * 25 24 23 41 41 H 1.08995 * 110.83198 * 215.28563 * 25 24 23 42 42 H 1.08993 * 110.30588 * 43.91591 * 26 22 20 43 43 H 1.08997 * 110.30128 * 281.75704 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.3147 3.2954 -1.1761 8 1 3.9554 4.2923 -1.3842 9 6 5.1155 2.6374 -2.1029 10 7 5.7052 1.5093 -1.7780 11 14 5.3531 3.3575 -3.8101 12 1 4.5881 4.6252 -3.9234 13 1 6.7954 3.6283 -4.0368 14 1 4.8649 2.3916 -4.8271 15 6 4.0361 3.3657 1.1589 16 8 3.5470 2.8950 2.1677 17 6 4.6844 4.6924 1.2021 18 6 5.7776 4.9632 0.3777 19 6 6.3751 6.2055 0.4192 20 6 5.8992 7.1755 1.2820 21 6 6.5622 8.5281 1.3246 22 6 4.8174 6.9138 2.1084 23 6 4.2071 5.6771 2.0728 24 6 3.0610 5.6413 3.0606 25 6 2.7622 7.1203 3.3857 26 6 4.1237 7.7979 3.1231 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.9557 0.7808 -0.8908 31 1 3.9564 0.7805 0.8891 32 1 6.2636 1.0502 -2.4248 33 1 6.1515 4.2040 -0.2934 34 1 7.2185 6.4196 -0.2205 35 1 7.3617 8.5176 2.0655 36 1 6.9786 8.7598 0.3442 37 1 5.8262 9.2852 1.5950 38 1 2.1879 5.1691 2.6101 39 1 3.3566 5.1077 3.9639 40 1 1.9973 7.5170 2.7181 41 1 2.4627 7.2354 4.4273 42 1 3.9765 8.7979 2.7155 43 1 4.7055 7.8456 4.0436 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449956460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:29 Heat of formation + Delta-G solvation = -95.702170 kcal Electronic energy + Delta-G solvation = -27392.444583 eV Core-core repulsion = 23595.541811 eV Total energy + Delta-G solvation = -3796.902772 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.06503 -39.56852 -38.05359 -35.67998 -35.39232 -34.71398 -32.48343 -31.67922 -28.81655 -28.53799 -27.59368 -26.85916 -25.84524 -24.64625 -21.89009 -20.98712 -20.53827 -19.94674 -19.07422 -17.38766 -16.92927 -16.24708 -15.72602 -15.60389 -15.26142 -15.22376 -14.57269 -14.29403 -14.24239 -13.59355 -13.48220 -13.33695 -12.84250 -12.75204 -12.70926 -12.51562 -12.30546 -11.90971 -11.77621 -11.58057 -11.44660 -11.36261 -11.22666 -11.10783 -10.81747 -10.77683 -10.68086 -10.45276 -10.44669 -10.36028 -10.19597 -9.67829 -9.23513 -8.66106 -7.95738 -7.90308 -7.66167 -6.54211 -4.29353 1.67207 2.01336 3.03562 3.12807 3.14750 3.19756 3.31131 3.80752 4.02735 4.46808 4.66713 4.81257 4.95195 4.98558 5.26508 5.35544 5.42985 5.47371 5.53869 5.57689 5.65594 5.67116 5.76397 5.84813 5.90763 5.96093 6.02834 6.07945 6.11492 6.19525 6.31265 6.35947 6.48216 6.53058 6.69992 6.71465 6.77343 7.06294 7.08718 7.14359 7.26359 7.32443 7.61405 7.70300 8.23396 8.62794 8.90864 9.28915 9.72314 10.49015 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.005891 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.213749 B = 4751.808199 C = 6675.757334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.444 3.556 4 O -0.504 6.504 5 C 0.130 3.870 6 N -0.425 5.425 7 C -0.322 4.322 8 H 0.091 0.909 9 C 0.041 3.959 10 N -0.868 5.868 11 Si 0.916 3.084 12 H -0.265 1.265 13 H -0.276 1.276 14 H -0.278 1.278 15 C 0.530 3.470 16 O -0.586 6.586 17 C -0.090 4.090 18 C -0.051 4.051 19 C -0.146 4.146 20 C -0.068 4.068 21 C -0.110 4.110 22 C -0.126 4.126 23 C -0.048 4.048 24 C -0.075 4.075 25 C -0.122 4.122 26 C -0.071 4.071 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.145 0.855 31 H 0.095 0.905 32 H 0.274 0.726 33 H 0.155 0.845 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 6.145 3.359 7.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.286 3.714 4 O -0.390 6.390 5 C 0.004 3.996 6 N -0.144 5.144 7 C -0.450 4.450 8 H 0.108 0.892 9 C -0.165 4.165 10 N -0.505 5.505 11 Si 0.742 3.258 12 H -0.189 1.189 13 H -0.202 1.202 14 H -0.203 1.203 15 C 0.320 3.680 16 O -0.471 6.471 17 C -0.092 4.092 18 C -0.069 4.069 19 C -0.164 4.164 20 C -0.068 4.068 21 C -0.167 4.167 22 C -0.126 4.126 23 C -0.049 4.049 24 C -0.111 4.111 25 C -0.160 4.160 26 C -0.108 4.108 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.162 0.838 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.172 0.828 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.221 6.052 3.752 7.225 hybrid contribution -0.114 0.189 -1.139 1.161 sum -1.336 6.241 2.612 6.897 Atomic orbital electron populations 1.23069 0.78292 1.02499 1.01911 1.86553 1.22091 1.35040 1.85033 1.25424 0.93701 0.80802 0.71491 1.90572 1.67011 1.36422 1.44948 1.21061 0.83900 0.87810 1.06790 1.42847 1.57042 1.08617 1.05847 1.19492 1.29145 1.02186 0.94197 0.89162 1.25556 0.94245 0.96369 1.00347 1.69738 1.28703 1.16412 1.35612 0.86006 0.78481 0.79604 0.81741 1.18904 1.20196 1.20324 1.18428 0.80858 0.85672 0.83018 1.90616 1.50141 1.71195 1.35113 1.19488 0.97889 0.94056 0.97804 1.21807 0.93136 0.96823 0.95115 1.20861 1.01222 0.93795 1.00486 1.19443 0.95349 0.95932 0.96116 1.20742 1.00008 0.93945 1.01978 1.20180 0.97316 0.95823 0.99240 1.20468 0.96440 0.92779 0.95190 1.20951 0.96619 0.95814 0.97765 1.22327 0.96774 0.95663 1.01229 1.20913 0.95266 0.97707 0.96961 0.92585 0.92586 0.89001 0.83761 0.88754 0.91502 0.82798 0.86240 0.91670 0.91910 0.92033 0.90642 0.90119 0.91371 0.91033 0.91420 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.56 101.05 1.07 1.63 16 2 O -0.37 -7.33 10.56 -39.24 -0.41 -7.75 16 3 C 0.44 10.32 7.84 36.01 0.28 10.60 16 4 O -0.50 -12.97 16.00 -18.75 -0.30 -13.27 16 5 C 0.13 3.09 5.36 -5.19 -0.03 3.06 16 6 N -0.42 -10.73 2.06 -117.22 -0.24 -10.97 16 7 C -0.32 -8.00 6.05 -15.00 -0.09 -8.09 16 8 H 0.09 2.31 7.47 -52.49 -0.39 1.92 16 9 C 0.04 0.96 4.73 -17.45 -0.08 0.88 16 10 N -0.87 -21.02 11.32 55.50 0.63 -20.39 16 11 Si 0.92 18.79 29.56 -169.99 -5.03 13.76 16 12 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 13 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 14 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 15 C 0.53 13.46 6.97 -12.38 -0.09 13.37 16 16 O -0.59 -15.76 15.67 5.29 0.08 -15.68 16 17 C -0.09 -2.03 5.38 -104.92 -0.56 -2.60 16 18 C -0.05 -1.06 8.23 -39.20 -0.32 -1.38 16 19 C -0.15 -2.56 9.67 -39.69 -0.38 -2.94 16 20 C -0.07 -1.11 5.89 -104.47 -0.62 -1.72 16 21 C -0.11 -1.33 9.86 36.01 0.35 -0.98 16 22 C -0.13 -2.16 6.00 -104.23 -0.63 -2.78 16 23 C -0.05 -0.96 5.99 -103.81 -0.62 -1.59 16 24 C -0.07 -1.36 5.63 -26.86 -0.15 -1.51 16 25 C -0.12 -1.70 7.08 -25.33 -0.18 -1.88 16 26 C -0.07 -0.97 6.26 -26.84 -0.17 -1.14 16 27 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 28 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.15 3.46 5.68 -51.93 -0.30 3.16 16 31 H 0.09 2.19 7.83 -51.93 -0.41 1.78 16 32 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 33 H 0.15 3.44 5.95 -52.48 -0.31 3.12 16 34 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.06 0.67 7.26 -51.93 -0.38 0.30 16 38 H 0.07 1.53 8.11 -51.93 -0.42 1.11 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.80 7.60 -51.93 -0.39 0.41 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -29.92 357.48 -8.06 -37.98 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.96 Total: 8.00 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -2.22 Total: 2.93 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.39 Total: -31.36 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -0.63 Total: -36.69 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.92 -8.06 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449956460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.722 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds