Wall clock time and date at job start Tue Mar 31 2020 11:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 117.00140 * 2 1 4 4 O 1.20823 * 120.00114 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99819 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46790 * 180.02562 * 5 3 2 7 7 C 1.36881 * 119.99726 * 262.95720 * 6 5 3 8 8 H 1.07994 * 119.99962 * 136.14528 * 7 6 5 9 9 C 1.39044 * 119.99981 * 316.14002 * 7 6 5 10 10 N 1.31375 * 120.00221 * 350.49541 * 9 7 6 11 11 Si 1.86795 * 120.00172 * 170.49331 * 9 7 6 12 12 H 1.48500 * 109.47224 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47326 * 120.00133 * 11 9 7 14 14 H 1.48508 * 109.47244 * 240.00209 * 11 9 7 15 15 C 1.34770 * 120.00391 * 82.95927 * 6 5 3 16 16 O 1.21589 * 120.00110 * 348.49859 * 15 6 5 17 17 C 1.47732 * 120.00228 * 168.78386 * 15 6 5 18 18 C 1.39570 * 120.04543 * 326.87490 * 17 15 6 19 19 C 1.37911 * 119.75564 * 179.75037 * 18 17 15 20 20 C 1.38264 * 120.10812 * 0.51362 * 19 18 17 21 21 C 1.50700 * 119.73370 * 179.73329 * 20 19 18 22 22 C 1.38636 * 120.53864 * 359.75210 * 20 19 18 23 23 C 1.37952 * 119.93807 * 359.97438 * 22 20 19 24 24 C 1.51348 * 109.83802 * 179.97438 * 23 22 20 25 25 C 1.54353 * 105.15001 * 17.16574 * 24 23 22 26 26 C 1.51406 * 130.30046 * 179.97438 * 22 20 19 27 27 H 1.09001 * 109.47243 * 300.00449 * 1 2 3 28 28 H 1.09005 * 109.47123 * 60.00261 * 1 2 3 29 29 H 1.08997 * 109.47651 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47032 * 59.99965 * 5 3 2 31 31 H 1.08994 * 109.47132 * 299.99462 * 5 3 2 32 32 H 0.96998 * 119.99809 * 179.97438 * 10 9 7 33 33 H 1.08004 * 120.11791 * 0.02562 * 18 17 15 34 34 H 1.08000 * 119.94127 * 180.26392 * 19 18 17 35 35 H 1.09003 * 109.46750 * 270.02121 * 21 20 19 36 36 H 1.09004 * 109.46979 * 30.01329 * 21 20 19 37 37 H 1.08995 * 109.47463 * 150.02119 * 21 20 19 38 38 H 1.09001 * 110.30780 * 136.08736 * 24 23 22 39 39 H 1.08997 * 110.30514 * 258.25031 * 24 23 22 40 40 H 1.08999 * 110.82675 * 91.91617 * 25 24 23 41 41 H 1.08995 * 110.83198 * 215.28563 * 25 24 23 42 42 H 1.08993 * 110.30588 * 43.91591 * 26 22 20 43 43 H 1.08997 * 110.30128 * 281.75704 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.3147 3.2954 -1.1761 8 1 3.9554 4.2923 -1.3842 9 6 5.1155 2.6374 -2.1029 10 7 5.7052 1.5093 -1.7780 11 14 5.3531 3.3575 -3.8101 12 1 4.5881 4.6252 -3.9234 13 1 6.7954 3.6283 -4.0368 14 1 4.8649 2.3916 -4.8271 15 6 4.0361 3.3657 1.1589 16 8 3.5470 2.8950 2.1677 17 6 4.6844 4.6924 1.2021 18 6 5.7776 4.9632 0.3777 19 6 6.3751 6.2055 0.4192 20 6 5.8992 7.1755 1.2820 21 6 6.5622 8.5281 1.3246 22 6 4.8174 6.9138 2.1084 23 6 4.2071 5.6771 2.0728 24 6 3.0610 5.6413 3.0606 25 6 2.7622 7.1203 3.3857 26 6 4.1237 7.7979 3.1231 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.9557 0.7808 -0.8908 31 1 3.9564 0.7805 0.8891 32 1 6.2636 1.0502 -2.4248 33 1 6.1515 4.2040 -0.2934 34 1 7.2185 6.4196 -0.2205 35 1 7.3617 8.5176 2.0655 36 1 6.9786 8.7598 0.3442 37 1 5.8262 9.2852 1.5950 38 1 2.1879 5.1691 2.6101 39 1 3.3566 5.1077 3.9639 40 1 1.9973 7.5170 2.7181 41 1 2.4627 7.2354 4.4273 42 1 3.9765 8.7979 2.7155 43 1 4.7055 7.8456 4.0436 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449956460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:28 Heat of formation + Delta-G solvation = -111.077010 kcal Electronic energy + Delta-G solvation = -27393.111286 eV Core-core repulsion = 23595.541811 eV Total energy + Delta-G solvation = -3797.569475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74932 -41.18424 -39.79100 -37.47999 -36.93975 -36.40404 -33.87328 -33.58096 -30.52322 -29.89538 -28.80077 -28.26425 -27.46913 -26.36657 -23.31098 -22.54366 -21.98484 -21.56366 -20.77082 -19.11959 -18.74966 -18.02030 -17.42213 -17.11223 -17.00734 -16.60065 -16.26575 -15.93254 -15.65004 -15.25634 -15.09089 -14.44857 -14.39584 -14.31563 -14.22596 -13.99228 -13.60839 -13.42699 -13.19187 -13.01756 -12.96833 -12.93816 -12.80410 -12.62375 -12.44999 -12.16625 -12.03817 -11.98836 -11.81633 -11.80869 -11.68995 -11.56990 -11.07774 -10.53877 -9.64574 -9.38558 -9.30424 -8.39728 -6.21771 0.15948 0.56374 1.24430 1.39180 1.44596 1.56036 1.63008 2.10345 2.30320 2.79943 2.91205 3.14605 3.56091 3.71898 4.03397 4.11303 4.15753 4.17836 4.24082 4.27229 4.28734 4.33977 4.44015 4.50006 4.60675 4.70621 4.80669 4.82119 4.90759 4.91826 4.99052 5.00428 5.10211 5.13302 5.29217 5.31617 5.34246 5.36662 5.42152 5.62131 5.74460 5.77002 5.80805 6.19366 6.32366 6.80617 7.00819 7.36905 7.81647 8.64962 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.005891 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.213749 B = 4751.808199 C = 6675.757334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.449 3.551 4 O -0.535 6.535 5 C 0.128 3.872 6 N -0.433 5.433 7 C -0.335 4.335 8 H 0.075 0.925 9 C 0.014 3.986 10 N -0.888 5.888 11 Si 0.977 3.023 12 H -0.268 1.268 13 H -0.264 1.264 14 H -0.274 1.274 15 C 0.514 3.486 16 O -0.619 6.619 17 C -0.130 4.130 18 C -0.066 4.066 19 C -0.145 4.145 20 C -0.059 4.059 21 C -0.107 4.107 22 C -0.123 4.123 23 C -0.076 4.076 24 C -0.077 4.077 25 C -0.112 4.112 26 C -0.065 4.065 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.090 0.910 32 H 0.281 0.719 33 H 0.130 0.870 34 H 0.148 0.852 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 8.816 3.137 9.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.292 3.708 4 O -0.424 6.424 5 C 0.003 3.997 6 N -0.150 5.150 7 C -0.463 4.463 8 H 0.093 0.907 9 C -0.190 4.190 10 N -0.524 5.524 11 Si 0.799 3.201 12 H -0.193 1.193 13 H -0.189 1.189 14 H -0.199 1.199 15 C 0.306 3.694 16 O -0.506 6.506 17 C -0.133 4.133 18 C -0.085 4.085 19 C -0.163 4.163 20 C -0.059 4.059 21 C -0.163 4.163 22 C -0.123 4.123 23 C -0.077 4.077 24 C -0.114 4.114 25 C -0.149 4.149 26 C -0.101 4.101 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.148 0.852 34 H 0.165 0.835 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.533 8.695 3.523 9.397 hybrid contribution -0.360 -0.718 -1.035 1.310 sum -0.893 7.976 2.488 8.403 Atomic orbital electron populations 1.23508 0.75332 1.05684 1.01932 1.86512 1.24864 1.32822 1.84203 1.25177 0.93513 0.81287 0.70815 1.90548 1.67601 1.37651 1.46598 1.21019 0.84804 0.87578 1.06339 1.43020 1.56992 1.08947 1.06086 1.19396 1.30332 1.02042 0.94545 0.90732 1.26184 0.93301 0.96445 1.03055 1.69797 1.28749 1.17078 1.36809 0.85111 0.78831 0.78666 0.77442 1.19270 1.18870 1.19918 1.19079 0.80665 0.86968 0.82643 1.90548 1.51787 1.72295 1.35977 1.19535 0.99532 0.93604 1.00610 1.21616 0.93572 0.98008 0.95259 1.21178 1.01564 0.92578 1.00977 1.19966 0.94363 0.97540 0.94070 1.20837 1.00710 0.91180 1.03595 1.20721 0.97042 0.95036 0.99534 1.20833 0.97671 0.93791 0.95390 1.20981 0.94717 0.98947 0.96726 1.22341 0.97566 0.91855 1.03119 1.21013 0.94311 0.98012 0.96806 0.92864 0.92368 0.84194 0.84039 0.89156 0.90887 0.85213 0.83477 0.89759 0.90441 0.90099 0.94264 0.91025 0.90955 0.88109 0.88390 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 10.56 113.37 1.20 2.06 16 2 O -0.37 -14.78 10.56 -51.36 -0.54 -15.33 16 3 C 0.45 21.86 7.84 71.24 0.56 22.42 16 4 O -0.54 -28.98 16.00 21.97 0.35 -28.63 16 5 C 0.13 6.46 5.36 85.64 0.46 6.92 16 6 N -0.43 -23.30 2.06 -643.03 -1.32 -24.62 16 7 C -0.34 -17.56 6.05 84.10 0.51 -17.05 16 8 H 0.07 4.06 7.47 -2.91 -0.02 4.04 16 9 C 0.01 0.69 4.73 84.95 0.40 1.09 16 10 N -0.89 -44.14 11.32 21.68 0.25 -43.90 16 11 Si 0.98 38.76 29.56 68.60 2.03 40.79 16 12 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 13 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 14 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 15 C 0.51 28.14 6.97 86.75 0.60 28.74 16 16 O -0.62 -35.96 15.67 -4.00 -0.06 -36.03 16 17 C -0.13 -6.25 5.38 -20.06 -0.11 -6.36 16 18 C -0.07 -2.87 8.23 22.51 0.19 -2.68 16 19 C -0.15 -4.96 9.67 22.20 0.21 -4.74 16 20 C -0.06 -1.76 5.89 -19.76 -0.12 -1.88 16 21 C -0.11 -2.06 9.86 71.24 0.70 -1.36 16 22 C -0.12 -4.01 6.00 -19.61 -0.12 -4.13 16 23 C -0.08 -3.15 5.99 -19.34 -0.12 -3.27 16 24 C -0.08 -2.90 5.63 30.51 0.17 -2.72 16 25 C -0.11 -2.88 7.08 31.50 0.22 -2.65 16 26 C -0.06 -1.51 6.26 30.52 0.19 -1.32 16 27 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 28 H 0.06 1.74 8.13 -2.38 -0.02 1.72 16 29 H 0.14 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.14 7.14 5.68 -2.39 -0.01 7.13 16 31 H 0.09 4.52 7.83 -2.39 -0.02 4.50 16 32 H 0.28 12.94 8.31 -92.71 -0.77 12.17 16 33 H 0.13 6.16 5.95 -2.91 -0.02 6.14 16 34 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.32 8.08 -2.38 -0.02 1.30 16 37 H 0.08 1.30 7.26 -2.39 -0.02 1.28 16 38 H 0.04 1.72 8.11 -2.39 -0.02 1.70 16 39 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.10 1.77 7.60 -2.39 -0.02 1.75 16 43 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -70.55 357.48 6.68 -63.87 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 1.03 Total: 30.78 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 4.96 Total: 13.06 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: -1.08 Total: -68.52 kcal Atomic # 8 Polarization: -79.72 SS G_CDS: -0.25 Total: -79.98 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -70.55 6.68 -63.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449956460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.208 kcal (2) G-P(sol) polarization free energy of solvation -70.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds