Wall clock time and date at job start Tue Mar 31 2020 12:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34224 * 117.00531 * 2 1 4 4 O 1.20823 * 119.99596 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00560 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47152 * 180.02562 * 5 3 2 7 7 C 1.37095 * 119.99798 * 263.96447 * 6 5 3 8 8 H 1.08002 * 119.99993 * 197.54600 * 7 6 5 9 9 C 1.38956 * 120.00055 * 17.55575 * 7 6 5 10 10 N 1.31402 * 120.00047 * 20.79050 * 9 7 6 11 11 Si 1.86802 * 119.99464 * 200.79746 * 9 7 6 12 12 H 1.48499 * 109.47113 * 89.99858 * 11 9 7 13 13 H 1.48500 * 109.46904 * 209.99286 * 11 9 7 14 14 H 1.48496 * 109.47620 * 329.99835 * 11 9 7 15 15 C 1.34778 * 119.99910 * 83.96938 * 6 5 3 16 16 O 1.21290 * 119.99972 * 359.97438 * 15 6 5 17 17 C 1.50696 * 119.99846 * 179.97438 * 15 6 5 18 18 H 1.08999 * 115.55063 * 34.32946 * 17 15 6 19 19 C 1.53002 * 117.49776 * 248.61995 * 17 15 6 20 20 C 1.52998 * 60.00116 * 252.51010 * 19 17 15 21 21 C 1.52999 * 117.49595 * 107.48777 * 20 19 17 22 22 C 1.50699 * 117.51812 * 252.52075 * 20 19 17 23 23 C 1.38227 * 120.00375 * 68.35732 * 22 20 19 24 24 C 1.38231 * 120.00491 * 179.81287 * 23 22 20 25 25 C 1.38243 * 119.99790 * 0.39067 * 24 23 22 26 26 C 1.38244 * 119.99542 * 359.85998 * 25 24 23 27 27 C 1.38228 * 120.00093 * 359.95595 * 26 25 24 28 28 H 1.09008 * 109.47320 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47163 * 60.00008 * 1 2 3 30 30 H 1.09000 * 109.47539 * 300.00319 * 1 2 3 31 31 H 1.08997 * 109.47162 * 300.00516 * 5 3 2 32 32 H 1.09008 * 109.46509 * 60.00072 * 5 3 2 33 33 H 0.97002 * 119.99907 * 179.97438 * 10 9 7 34 34 H 1.09003 * 117.49740 * 0.02562 * 19 17 15 35 35 H 1.09005 * 117.49881 * 145.02211 * 19 17 15 36 36 H 1.08992 * 109.47297 * 351.37800 * 21 20 19 37 37 H 1.08998 * 109.47142 * 111.38346 * 21 20 19 38 38 H 1.09000 * 109.47126 * 231.37548 * 21 20 19 39 39 H 1.08006 * 120.00012 * 359.97438 * 23 22 20 40 40 H 1.07994 * 120.00712 * 180.22909 * 24 23 22 41 41 H 1.07995 * 120.00195 * 179.83454 * 25 24 23 42 42 H 1.08003 * 119.99428 * 179.97438 * 26 25 24 43 43 H 1.08000 * 119.99959 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 0.0011 7 6 4.2962 3.3018 -1.1794 8 1 4.8629 4.2212 -1.1710 9 6 3.8858 2.7497 -2.3867 10 7 2.8850 1.8986 -2.4134 11 14 4.7570 3.2173 -3.9715 12 1 5.8845 2.2811 -4.2114 13 1 3.7997 3.1396 -5.1041 14 1 5.2795 4.6027 -3.8591 15 6 4.0548 3.3604 1.1620 16 8 3.7761 2.8099 2.2063 17 6 4.4826 4.8053 1.1626 18 1 4.1696 5.3886 0.2967 19 6 5.8380 5.1405 1.7883 20 6 4.5457 5.5229 2.5124 21 6 4.1695 4.7185 3.7583 22 6 4.1702 6.9821 2.5429 23 6 3.7926 7.6231 1.3780 24 6 3.4445 8.9606 1.4066 25 6 3.4818 9.6591 2.5989 26 6 3.8644 9.0193 3.7631 27 6 4.2089 7.6809 3.7350 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8899 31 1 3.9557 0.7808 0.8907 32 1 3.9564 0.7804 -0.8892 33 1 2.5983 1.5135 -3.2562 34 1 6.4204 4.3158 2.1991 35 1 6.4171 5.9445 1.3339 36 1 4.8390 3.8639 3.8549 37 1 4.2593 5.3520 4.6407 38 1 3.1419 4.3665 3.6670 39 1 3.7670 7.0783 0.4457 40 1 3.1458 9.4605 0.4971 41 1 3.2124 10.7047 2.6209 42 1 3.8940 9.5651 4.6946 43 1 4.5082 7.1811 4.6445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449961567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:40 Heat of formation + Delta-G solvation = -52.019702 kcal Electronic energy + Delta-G solvation = -27120.036464 eV Core-core repulsion = 23325.027906 eV Total energy + Delta-G solvation = -3795.008558 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.01623 -39.27567 -38.32485 -36.40415 -35.15782 -34.54770 -31.61190 -30.96762 -30.37039 -28.74505 -27.79858 -26.35197 -24.91784 -23.10723 -22.78790 -22.08515 -20.24112 -19.40097 -18.88332 -17.15342 -16.78480 -16.54082 -16.08800 -15.44745 -15.21364 -14.89688 -14.67745 -14.51405 -14.18309 -13.90334 -13.48322 -13.25287 -13.19194 -12.71625 -12.55093 -12.42012 -12.24161 -11.90991 -11.80173 -11.63302 -11.39224 -11.30699 -11.26430 -10.88107 -10.78822 -10.65507 -10.55497 -10.43852 -9.80837 -9.80016 -9.58235 -9.46499 -9.02329 -8.75360 -8.53514 -8.19916 -7.96389 -6.52133 -4.00601 1.51093 1.57125 3.05097 3.17188 3.19620 3.38332 3.69278 3.83010 3.95496 4.06318 4.43338 4.56125 4.91638 5.03116 5.05593 5.13452 5.25818 5.30095 5.50969 5.55889 5.68512 5.70698 5.74418 5.78690 5.95625 6.01585 6.09656 6.15654 6.21717 6.27401 6.31190 6.40663 6.41595 6.50853 6.58227 6.64643 6.68583 6.71226 6.87648 7.02660 7.18822 7.33586 7.46919 7.59476 8.22822 8.96504 9.12190 9.36131 9.76723 10.55421 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.004521 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.723196 B = 6192.268531 C = 7264.329466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.484 3.516 4 O -0.498 6.498 5 C 0.158 3.842 6 N -0.425 5.425 7 C -0.333 4.333 8 H 0.105 0.895 9 C 0.037 3.963 10 N -0.869 5.869 11 Si 0.925 3.075 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.269 1.269 15 C 0.499 3.501 16 O -0.594 6.594 17 C -0.139 4.139 18 H 0.123 0.877 19 C -0.142 4.142 20 C -0.075 4.075 21 C -0.091 4.091 22 C -0.031 4.031 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.133 4.133 26 C -0.123 4.123 27 C -0.115 4.115 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.272 0.728 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 5.919 5.551 8.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.325 3.675 4 O -0.382 6.382 5 C 0.032 3.968 6 N -0.143 5.143 7 C -0.460 4.460 8 H 0.122 0.878 9 C -0.168 4.168 10 N -0.506 5.506 11 Si 0.751 3.249 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.194 1.194 15 C 0.289 3.711 16 O -0.480 6.480 17 C -0.160 4.160 18 H 0.140 0.860 19 C -0.180 4.180 20 C -0.076 4.076 21 C -0.148 4.148 22 C -0.031 4.031 23 C -0.136 4.136 24 C -0.136 4.136 25 C -0.151 4.151 26 C -0.141 4.141 27 C -0.133 4.133 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.009 5.829 5.885 8.523 hybrid contribution -0.132 0.332 -1.331 1.378 sum 1.877 6.161 4.553 7.888 Atomic orbital electron populations 1.22924 0.78749 1.01762 1.01627 1.86450 1.21655 1.35567 1.85747 1.23951 0.92281 0.80562 0.70680 1.90519 1.66459 1.36348 1.44895 1.20451 0.87244 0.85618 1.03467 1.43340 1.56927 1.07905 1.06173 1.19651 1.33883 1.10270 0.82194 0.87778 1.25229 0.94769 0.97180 0.99636 1.69839 1.22123 1.30768 1.27919 0.85957 0.79017 0.79150 0.80735 1.20160 1.21058 1.19394 1.19189 0.81727 0.86526 0.83647 1.90533 1.55546 1.70086 1.31823 1.22220 1.01268 0.95777 0.96746 0.85959 1.23091 0.89748 1.02632 1.02509 1.20190 1.01606 0.90963 0.94801 1.21267 1.03430 0.97636 0.92483 1.19154 0.97441 0.93229 0.93299 1.21232 0.99034 0.94658 0.98633 1.21117 1.00046 0.94462 0.97954 1.21080 1.01365 0.99643 0.93020 1.21070 1.00193 0.94770 0.98037 1.21001 1.00484 0.94124 0.97720 0.89637 0.92644 0.93174 0.90056 0.86063 0.91720 0.88321 0.88687 0.91405 0.94176 0.91348 0.85480 0.86244 0.86558 0.86411 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.20 10.56 -39.24 -0.41 -8.61 16 3 C 0.48 12.06 6.12 36.01 0.22 12.28 16 4 O -0.50 -13.95 15.74 -18.75 -0.30 -14.24 16 5 C 0.16 3.76 5.13 -5.19 -0.03 3.74 16 6 N -0.43 -10.52 2.18 -116.09 -0.25 -10.77 16 7 C -0.33 -8.18 9.00 -14.93 -0.13 -8.32 16 8 H 0.10 2.42 6.43 -52.49 -0.34 2.08 16 9 C 0.04 0.90 4.88 -17.47 -0.09 0.81 16 10 N -0.87 -22.31 9.24 55.50 0.51 -21.80 16 11 Si 0.92 19.01 29.60 -169.99 -5.03 13.98 16 12 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 13 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 15 C 0.50 11.90 7.18 -10.99 -0.08 11.82 16 16 O -0.59 -14.91 12.79 5.55 0.07 -14.84 16 17 C -0.14 -2.79 4.31 -91.77 -0.40 -3.19 16 18 H 0.12 2.47 5.03 -51.93 -0.26 2.21 16 19 C -0.14 -2.36 9.58 -26.73 -0.26 -2.62 16 20 C -0.08 -1.31 2.55 -155.66 -0.40 -1.71 16 21 C -0.09 -1.62 7.97 37.16 0.30 -1.32 16 22 C -0.03 -0.50 5.45 -104.63 -0.57 -1.07 16 23 C -0.12 -1.83 9.39 -39.59 -0.37 -2.21 16 24 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 25 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 26 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 27 C -0.12 -1.61 9.27 -39.58 -0.37 -1.97 16 28 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 29 H 0.05 1.02 8.13 -51.93 -0.42 0.59 16 30 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.08 1.80 7.61 -51.93 -0.40 1.41 16 32 H 0.12 2.86 6.41 -51.92 -0.33 2.53 16 33 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.10 1.61 8.05 -51.93 -0.42 1.20 16 35 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.07 1.25 7.01 -51.93 -0.36 0.88 16 37 H 0.04 0.59 6.14 -51.93 -0.32 0.27 16 38 H 0.07 1.39 7.26 -51.93 -0.38 1.01 16 39 H 0.13 2.04 5.93 -52.48 -0.31 1.73 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 43 H 0.12 1.54 6.45 -52.49 -0.34 1.20 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -30.66 354.30 -7.91 -38.57 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.55 Total: 10.17 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -2.29 Total: 2.20 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.26 Total: -32.57 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -0.64 Total: -37.69 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.66 -7.91 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449961567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.445 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds