Wall clock time and date at job start Tue Mar 31 2020 12:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34224 * 117.00531 * 2 1 4 4 O 1.20823 * 119.99596 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00560 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47152 * 180.02562 * 5 3 2 7 7 C 1.37095 * 119.99798 * 263.96447 * 6 5 3 8 8 H 1.08002 * 119.99993 * 197.54600 * 7 6 5 9 9 C 1.38956 * 120.00055 * 17.55575 * 7 6 5 10 10 N 1.31402 * 120.00047 * 20.79050 * 9 7 6 11 11 Si 1.86802 * 119.99464 * 200.79746 * 9 7 6 12 12 H 1.48499 * 109.47113 * 89.99858 * 11 9 7 13 13 H 1.48500 * 109.46904 * 209.99286 * 11 9 7 14 14 H 1.48496 * 109.47620 * 329.99835 * 11 9 7 15 15 C 1.34778 * 119.99910 * 83.96938 * 6 5 3 16 16 O 1.21290 * 119.99972 * 359.97438 * 15 6 5 17 17 C 1.50696 * 119.99846 * 179.97438 * 15 6 5 18 18 H 1.08999 * 115.55063 * 34.32946 * 17 15 6 19 19 C 1.53002 * 117.49776 * 248.61995 * 17 15 6 20 20 C 1.52998 * 60.00116 * 252.51010 * 19 17 15 21 21 C 1.52999 * 117.49595 * 107.48777 * 20 19 17 22 22 C 1.50699 * 117.51812 * 252.52075 * 20 19 17 23 23 C 1.38227 * 120.00375 * 68.35732 * 22 20 19 24 24 C 1.38231 * 120.00491 * 179.81287 * 23 22 20 25 25 C 1.38243 * 119.99790 * 0.39067 * 24 23 22 26 26 C 1.38244 * 119.99542 * 359.85998 * 25 24 23 27 27 C 1.38228 * 120.00093 * 359.95595 * 26 25 24 28 28 H 1.09008 * 109.47320 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47163 * 60.00008 * 1 2 3 30 30 H 1.09000 * 109.47539 * 300.00319 * 1 2 3 31 31 H 1.08997 * 109.47162 * 300.00516 * 5 3 2 32 32 H 1.09008 * 109.46509 * 60.00072 * 5 3 2 33 33 H 0.97002 * 119.99907 * 179.97438 * 10 9 7 34 34 H 1.09003 * 117.49740 * 0.02562 * 19 17 15 35 35 H 1.09005 * 117.49881 * 145.02211 * 19 17 15 36 36 H 1.08992 * 109.47297 * 351.37800 * 21 20 19 37 37 H 1.08998 * 109.47142 * 111.38346 * 21 20 19 38 38 H 1.09000 * 109.47126 * 231.37548 * 21 20 19 39 39 H 1.08006 * 120.00012 * 359.97438 * 23 22 20 40 40 H 1.07994 * 120.00712 * 180.22909 * 24 23 22 41 41 H 1.07995 * 120.00195 * 179.83454 * 25 24 23 42 42 H 1.08003 * 119.99428 * 179.97438 * 26 25 24 43 43 H 1.08000 * 119.99959 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 0.0011 7 6 4.2962 3.3018 -1.1794 8 1 4.8629 4.2212 -1.1710 9 6 3.8858 2.7497 -2.3867 10 7 2.8850 1.8986 -2.4134 11 14 4.7570 3.2173 -3.9715 12 1 5.8845 2.2811 -4.2114 13 1 3.7997 3.1396 -5.1041 14 1 5.2795 4.6027 -3.8591 15 6 4.0548 3.3604 1.1620 16 8 3.7761 2.8099 2.2063 17 6 4.4826 4.8053 1.1626 18 1 4.1696 5.3886 0.2967 19 6 5.8380 5.1405 1.7883 20 6 4.5457 5.5229 2.5124 21 6 4.1695 4.7185 3.7583 22 6 4.1702 6.9821 2.5429 23 6 3.7926 7.6231 1.3780 24 6 3.4445 8.9606 1.4066 25 6 3.4818 9.6591 2.5989 26 6 3.8644 9.0193 3.7631 27 6 4.2089 7.6809 3.7350 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8899 31 1 3.9557 0.7808 0.8907 32 1 3.9564 0.7804 -0.8892 33 1 2.5983 1.5135 -3.2562 34 1 6.4204 4.3158 2.1991 35 1 6.4171 5.9445 1.3339 36 1 4.8390 3.8639 3.8549 37 1 4.2593 5.3520 4.6407 38 1 3.1419 4.3665 3.6670 39 1 3.7670 7.0783 0.4457 40 1 3.1458 9.4605 0.4971 41 1 3.2124 10.7047 2.6209 42 1 3.8940 9.5651 4.6946 43 1 4.5082 7.1811 4.6445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449961567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:39 Heat of formation + Delta-G solvation = -67.179788 kcal Electronic energy + Delta-G solvation = -27120.693855 eV Core-core repulsion = 23325.027906 eV Total energy + Delta-G solvation = -3795.665949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.59390 -40.94398 -39.82882 -37.91540 -36.97214 -36.43895 -33.50213 -32.08121 -31.49703 -30.45321 -29.22707 -27.96023 -26.76799 -24.61574 -23.97012 -23.23113 -21.99958 -21.04879 -20.39590 -18.60061 -18.53069 -18.39687 -17.59001 -17.27456 -16.94075 -16.24677 -16.18637 -15.93610 -15.66309 -15.32498 -15.05216 -14.65064 -14.35789 -14.26417 -14.09038 -14.05342 -13.84050 -13.42934 -13.16857 -13.10681 -13.04690 -12.86693 -12.76536 -12.55669 -12.36992 -12.08861 -11.96919 -11.80387 -11.59420 -11.52143 -11.18677 -10.94779 -10.87630 -10.27901 -9.87253 -9.78445 -9.41596 -8.38427 -5.93081 0.44827 0.53821 1.39133 1.48192 1.58737 1.65505 1.76859 2.17838 2.32286 2.70190 2.82090 3.04757 3.24331 3.70545 3.74393 3.97114 4.03104 4.18709 4.21828 4.29610 4.32840 4.33218 4.38889 4.46116 4.56601 4.62632 4.67456 4.67557 4.72637 4.80148 4.97398 4.98930 5.02138 5.12097 5.20971 5.23848 5.42939 5.48276 5.62311 5.65699 5.66701 5.74305 5.79579 6.16170 6.33817 7.07406 7.20882 7.49796 7.90400 8.69107 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.004521 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.723196 B = 6192.268531 C = 7264.329466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.377 6.377 3 C 0.486 3.514 4 O -0.538 6.538 5 C 0.155 3.845 6 N -0.439 5.439 7 C -0.348 4.348 8 H 0.112 0.888 9 C -0.005 4.005 10 N -0.898 5.898 11 Si 0.994 3.006 12 H -0.267 1.267 13 H -0.291 1.291 14 H -0.260 1.260 15 C 0.489 3.511 16 O -0.616 6.616 17 C -0.167 4.167 18 H 0.114 0.886 19 C -0.118 4.118 20 C -0.066 4.066 21 C -0.084 4.084 22 C -0.053 4.053 23 C -0.140 4.140 24 C -0.124 4.124 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.122 4.122 28 H 0.135 0.865 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.271 0.729 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.110 0.890 40 H 0.136 0.864 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.332 7.832 6.080 10.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.294 6.294 3 C 0.329 3.671 4 O -0.426 6.426 5 C 0.029 3.971 6 N -0.156 5.156 7 C -0.475 4.475 8 H 0.130 0.870 9 C -0.206 4.206 10 N -0.536 5.536 11 Si 0.818 3.182 12 H -0.193 1.193 13 H -0.217 1.217 14 H -0.184 1.184 15 C 0.280 3.720 16 O -0.503 6.503 17 C -0.187 4.187 18 H 0.132 0.868 19 C -0.156 4.156 20 C -0.067 4.067 21 C -0.141 4.141 22 C -0.053 4.053 23 C -0.158 4.158 24 C -0.142 4.142 25 C -0.146 4.146 26 C -0.136 4.136 27 C -0.140 4.140 28 H 0.153 0.847 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.138 0.862 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.136 0.864 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.128 0.872 40 H 0.154 0.846 41 H 0.166 0.834 42 H 0.169 0.831 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.856 7.725 6.422 10.444 hybrid contribution -0.501 -0.268 -1.419 1.529 sum 2.355 7.456 5.003 9.283 Atomic orbital electron populations 1.23285 0.76255 1.04868 1.01100 1.86420 1.24076 1.33844 1.85061 1.24122 0.92683 0.80738 0.69530 1.90485 1.67367 1.37757 1.46983 1.20507 0.87001 0.85874 1.03670 1.43578 1.57184 1.08245 1.06641 1.19988 1.34124 1.10854 0.82486 0.87017 1.26090 0.94984 0.97073 1.02475 1.69949 1.23321 1.31956 1.28421 0.84909 0.77701 0.79334 0.76294 1.19256 1.21742 1.18427 1.19882 0.81067 0.87948 0.83138 1.90501 1.56405 1.71037 1.32402 1.22086 1.04714 0.93492 0.98441 0.86777 1.23166 0.88730 1.02891 1.00777 1.20259 1.01566 0.91894 0.92934 1.21153 1.00892 0.97870 0.94173 1.19131 0.99433 0.92285 0.94498 1.21239 1.00652 0.95862 0.98038 1.21374 0.99647 0.93657 0.99542 1.21493 0.99763 1.01079 0.92257 1.21471 0.98550 0.94120 0.99494 1.21207 1.00448 0.95069 0.97238 0.84681 0.93708 0.93223 0.89145 0.86226 0.91923 0.88134 0.86367 0.92627 0.90933 0.94701 0.87192 0.84595 0.83374 0.83148 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 10.56 113.37 1.20 2.54 16 2 O -0.38 -16.61 10.56 -51.36 -0.54 -17.15 16 3 C 0.49 25.01 6.12 71.24 0.44 25.45 16 4 O -0.54 -31.36 15.74 21.97 0.35 -31.01 16 5 C 0.16 7.67 5.13 85.63 0.44 8.11 16 6 N -0.44 -22.46 2.18 -639.59 -1.39 -23.85 16 7 C -0.35 -17.50 9.00 84.04 0.76 -16.75 16 8 H 0.11 5.30 6.43 -2.91 -0.02 5.28 16 9 C 0.00 -0.23 4.88 84.93 0.41 0.19 16 10 N -0.90 -47.20 9.24 21.66 0.20 -47.00 16 11 Si 0.99 39.17 29.60 68.60 2.03 41.20 16 12 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 13 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 14 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 15 C 0.49 24.20 7.18 87.66 0.63 24.83 16 16 O -0.62 -32.24 12.79 -3.06 -0.04 -32.28 16 17 C -0.17 -6.87 4.31 -11.54 -0.05 -6.92 16 18 H 0.11 4.84 5.03 -2.39 -0.01 4.83 16 19 C -0.12 -3.88 9.58 30.59 0.29 -3.58 16 20 C -0.07 -2.31 2.55 -52.93 -0.13 -2.45 16 21 C -0.08 -3.00 7.97 71.98 0.57 -2.43 16 22 C -0.05 -1.66 5.45 -19.87 -0.11 -1.77 16 23 C -0.14 -4.32 9.39 22.27 0.21 -4.11 16 24 C -0.12 -3.11 10.05 22.27 0.22 -2.89 16 25 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 26 C -0.12 -2.48 10.05 22.27 0.22 -2.25 16 27 C -0.12 -3.11 9.27 22.27 0.21 -2.90 16 28 H 0.14 3.33 8.14 -2.38 -0.02 3.31 16 29 H 0.04 1.65 8.13 -2.39 -0.02 1.63 16 30 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 31 H 0.09 4.18 7.61 -2.39 -0.02 4.16 16 32 H 0.12 5.86 6.41 -2.38 -0.02 5.85 16 33 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 34 H 0.10 3.24 8.05 -2.39 -0.02 3.22 16 35 H 0.12 3.30 8.14 -2.38 -0.02 3.28 16 36 H 0.05 2.08 7.01 -2.39 -0.02 2.06 16 37 H 0.07 2.05 6.14 -2.39 -0.01 2.04 16 38 H 0.03 1.46 7.26 -2.39 -0.02 1.44 16 39 H 0.11 3.67 5.93 -2.91 -0.02 3.66 16 40 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 41 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 42 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 43 H 0.14 3.01 6.45 -2.91 -0.02 2.99 16 Total: -1.00 -68.77 354.30 7.17 -61.60 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: 1.03 Total: 35.87 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 5.53 Total: 12.62 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -1.19 Total: -70.85 kcal Atomic # 8 Polarization: -80.20 SS G_CDS: -0.24 Total: -80.44 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -68.77 7.17 -61.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449961567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.579 kcal (2) G-P(sol) polarization free energy of solvation -68.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds